Carg09273 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09273
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cobalamin biosynthesis CobW-like protein
Location	Cucurbita_argyrosperma_scaffold_018 : 321733 .. 323091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGAGAATTGAATTAGGTACAACTCAAAAAAGAAAGGAACATAAAGTATTTCGAGACGAATGGGTTTGTATGTGCTGTTCTCATCCCTGCCTTATCTTCCAACAGGTTCGTTCTTGGCTCGAGGAGATACTTTGGGATAGAAAAGGTGGCATGGATGTCTATCGTTGCAAAGGAGTCTTAAGCATAAAAAATTCTGATCAACTACATACTTTGCAGGTAGATTATGTGTTTAAGATTACCTGGTCTAAATGTTCATTAGGACTATATTTGTATTTGTTTAAAAGAATTGATAATGACAGTTAGAAACATTAGTTCGTCTTGACAGGGTTCATCATCCTTTGGCATGATCATTTGTGATGTTAATTTGATTTCCATAAATTCCTTTCGGGTTTTGAACACGGTCGAGTTACTTTTCTTATCAACAGCAAGGACGTTGTTTGGGCTGTCAGTCATTGACTGGGAAACTCTATAGTTACAGCTTAAAGTTAGGACTAGGCACCACATCTTGATGATGCAGGTCTTATATATATGATTATGACCATTGCATCATCTACTTCTCAATCCATTCCCTTCCCCTATACATTCCATACAACAGACTTATTTTTTCATGTCAATGACCGACTGAGCATTGGCAGGCGGTGAGGGAATTATACGAAATCGTTCCTACTCGCCAATGGAATAACGGAGAAAGTCAGATGAACAAGATAGTCTTCATAGGTAAAAGATATACAAAATTATCCACTCTTATTCCTCATGAATCTTGATGCTGCAAATACTTAATTGTTTTCTTGAAACGTATACGTCCTCTATAATGCAGGTCGTAATCTTAGCGAGGATGTTCTTAGCGAAACGTTTAGAGCATGTGCAGTCTCCTAAGTTTTGTAGCTTTACCAGTTGTTGGATTACATGGGAAAACAAAGCAAGGTGCGTATTGTAGAAGTGCTTGTGCATGAATCACTTATTGTACTGATTTCAAAGTGCTTTTGTGGGCATTTCTTAAACTTTAACTATAAGGAAAAGGAGAATGTGGAGTTTCTTTTGTAGGTAAATCTTGGAGATTTGTGCAATAGTTGTTTTTAGTTTAATCCTATATAACAATTGGACACTCCCTTGTCTCGAACGTCTCGGGACTAAATGCACATATTCTTAAAAATTCGGGACTAAAATATCAATTCTTCCGAAAATCTTTGATCTCTTATTCGCTGCTTTGTTGTATGCACAACATTAGTGTGAGATCCTATATTAGTTGAAGAGGGGAAGAGGGGAACGAAACATTCCTTAGTGTAGAGACCTTTCTCTAGTAGACGCATTTTAAAATTGTGAGACTGATAGCGATACATAACGGGCCAAAGT

mRNA sequence

ATGAACATGAGAATTGAATTAGGTACAACTCAAAAAAGAAAGGAACATAAAGTATTTCGAGACGAATGGGTTTGTATGTGCTGTTCTCATCCCTGCCTTATCTTCCAACAGGTTCGTTCTTGGCTCGAGGAGATACTTTGGGATAGAAAAGGTGGCATGGATGTCTATCGTTGCAAAGGAGTCTTAAGCATAAAAAATTCTGATCAACTACATACTTTGCAGGCGGTGAGGGAATTATACGAAATCGTTCCTACTCGCCAATGGAATAACGGAGAAAGTCAGATGAACAAGATAGTCTTCATAGGTCGTAATCTTAGCGAGGATGTTCTTAGCGAAACGTTTAGAGCATGTGCAGTCTCCTAAGTTTTGTAGCTTTACCAGTTGTTGGATTACATGGGAAAACAAAGCAAGGTGCGTATTGTAGAAGTGCTTGTGCATGAATCACTTATTGTACTGATTTCAAAGTGCTTTTGTGGGCATTTCTTAAACTTTAACTATAAGGAAAAGGAGAATGTGGAGTTTCTTTTGTAGGTAAATCTTGGAGATTTGTGCAATAGTTGTTTTTAGTTTAATCCTATATAACAATTGGACACTCCCTTGTCTCGAACGTCTCGGGACTAAATGCACATATTCTTAAAAATTCGGGACTAAAATATCAATTCTTCCGAAAATCTTTGATCTCTTATTCGCTGCTTTGTTGTATGCACAACATTAGTGTGAGATCCTATATTAGTTGAAGAGGGGAAGAGGGGAACGAAACATTCCTTAGTGTAGAGACCTTTCTCTAGTAGACGCATTTTAAAATTGTGAGACTGATAGCGATACATAACGGGCCAAAGT

Coding sequence (CDS)

ATGAACATGAGAATTGAATTAGGTACAACTCAAAAAAGAAAGGAACATAAAGTATTTCGAGACGAATGGGTTTGTATGTGCTGTTCTCATCCCTGCCTTATCTTCCAACAGGTTCGTTCTTGGCTCGAGGAGATACTTTGGGATAGAAAAGGTGGCATGGATGTCTATCGTTGCAAAGGAGTCTTAAGCATAAAAAATTCTGATCAACTACATACTTTGCAGGCGGTGAGGGAATTATACGAAATCGTTCCTACTCGCCAATGGAATAACGGAGAAAGTCAGATGAACAAGATAGTCTTCATAGGTCGTAATCTTAGCGAGGATGTTCTTAGCGAAACGTTTAGAGCATGTGCAGTCTCCTAA

Protein sequence

MNMRIELGTTQKRKEHKVFRDEWVCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

Homology

[Close]

BLAST of Carg09273 vs. NCBI nr
Match: XP_022962150.1 (COBW domain-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 3.4e-41
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +VRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP
Sbjct: 272 LCISYHDKVDLDKVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 331

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 121
           TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
Sbjct: 332 TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 367

[Close]

BLAST of Carg09273 vs. NCBI nr
Match: XP_023546079.1 (COBW domain-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +VRSWLEEILWD+KGGMDVYRCKGVLSIKNSDQLHTLQAVRE+YEIVP
Sbjct: 272 LCISYHDKVDLDKVRSWLEEILWDKKGGMDVYRCKGVLSIKNSDQLHTLQAVREIYEIVP 331

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 121
           TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
Sbjct: 332 TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 367

[Close]

BLAST of Carg09273 vs. NCBI nr
Match: XP_022997190.1 (COBW domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +VRSWLEEILWD+KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP
Sbjct: 272 LCISYHDKVDLDKVRSWLEEILWDKKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 331

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 121
           TRQWNN ESQMNKIVFIGRNLSE+VLSETFRACAVS
Sbjct: 332 TRQWNNRESQMNKIVFIGRNLSENVLSETFRACAVS 367

[Close]

BLAST of Carg09273 vs. NCBI nr
Match: XP_016899917.1 (PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo] >XP_016899918.1 PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo] >XP_016899919.1 PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 8.6e-37
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP
Sbjct: 272 LCISEHHKVDLDKVHSWLEEILWEKKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 331

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA 119
           TRQW+NGESQMNKIVFIGRNL+EDVLS+TFR CA
Sbjct: 332 TRQWSNGESQMNKIVFIGRNLNEDVLSKTFRECA 365

[Close]

BLAST of Carg09273 vs. NCBI nr
Match: XP_016899920.1 (PREDICTED: COBW domain-containing protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 8.6e-37
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP
Sbjct: 242 LCISEHHKVDLDKVHSWLEEILWEKKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 301

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA 119
           TRQW+NGESQMNKIVFIGRNL+EDVLS+TFR CA
Sbjct: 302 TRQWSNGESQMNKIVFIGRNLNEDVLSKTFRECA 335

[Close]

BLAST of Carg09273 vs. TAIR10
Match: AT1G26520.1 (Cobalamin biosynthesis CobW-like protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-28
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 26  MCCSHPCLI-FQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S P  I   +VR WLEEILWD+K  MDVYRCK VLSI+NSDQ+H LQAVR++YEIVP
Sbjct: 280 LCISEPQPINLDKVRLWLEEILWDKKSEMDVYRCKAVLSIQNSDQMHILQAVRDIYEIVP 339

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRAC 118
            R+W+  E++ NKIVFIG  L E+VL    R C
Sbjct: 340 ARKWSEEENRTNKIVFIGHKLDEEVLRSGLRDC 372

[Close]

BLAST of Carg09273 vs. TAIR10
Match: AT1G15730.1 (Cobalamin biosynthesis CobW-like protein)

HSP 1 Score: 77.0 bits (188), Expect = 8.7e-15
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 33  LIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGE 92
           L  ++   WL  +L+ R    D+YR KG+LS+++ D+    Q V E++E  P R W   E
Sbjct: 364 LDLEKANMWLGALLYQR--SEDIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDE 423

Query: 93  SQMNKIVFIGRNLSEDVLSETFRACAV 120
           ++ NKIVFIG+NL+ + L   FRAC +
Sbjct: 424 TRTNKIVFIGKNLNREELEMGFRACLI 448

[Close]

BLAST of Carg09273 vs. TAIR10
Match: AT1G80480.1 (plastid transcriptionally active 17)

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-13
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 33  LIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGE 92
           L  ++   WL  +L +R    D+YR KG+LS+   ++    Q V ++++  P R W   E
Sbjct: 360 LDLEKANMWLGTLLMER--SEDIYRMKGLLSVHTMEERFVFQGVHDIFQGSPDRLWGREE 419

Query: 93  SQMNKIVFIGRNLSEDVLSETFRACAV 120
            ++NKIVFIG+NL+ + L + F+AC +
Sbjct: 420 ERVNKIVFIGKNLNREELEKGFKACLI 444

[Close]

BLAST of Carg09273 vs. Swiss-Prot
Match: sp|Q5JTY5|CBWD3_HUMAN (COBW domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CBWD3 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 36  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QW 95
           + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W
Sbjct: 288 EHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSW 347

Query: 96  NNGESQMNKIVFIGRNLSEDVLSETFRA 117
            +   + N++V IGRNL +D+L + F A
Sbjct: 348 KDDTERTNRLVLIGRNLDKDILKQLFIA 375

[Close]

BLAST of Carg09273 vs. Swiss-Prot
Match: sp|Q5RIA9|CBWD5_HUMAN (COBW domain-containing protein 5 OS=Homo sapiens OX=9606 GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 36  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QW 95
           + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W
Sbjct: 288 EHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSW 347

Query: 96  NNGESQMNKIVFIGRNLSEDVLSETFRA 117
            +   + N++V IGRNL +D+L + F A
Sbjct: 348 KDDTERTNRLVLIGRNLDKDILKQLFIA 375

[Close]

BLAST of Carg09273 vs. Swiss-Prot
Match: sp|Q99MB4|CBWD1_RAT (COBW domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Cbwd1 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 29/86 (33.72%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 36  QQVRSWLEEILWDR----KGG--MDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QW 95
           + +  +++ +LW++    K G  M+V R KG++SIK+  Q   +Q + ELYE+  +R  W
Sbjct: 286 ESLNVFIQNLLWEKNVKNKDGRCMEVIRLKGLVSIKDKPQQMIVQGIHELYELEESRVNW 345

Query: 96  NNGESQMNKIVFIGRNLSEDVLSETF 115
            +   +  ++VFIG+NL +D+L + F
Sbjct: 346 KDDAERACQLVFIGKNLDKDILQQLF 371

[Close]

BLAST of Carg09273 vs. Swiss-Prot
Match: sp|Q9BRT8|CBWD1_HUMAN (COBW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CBWD1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-08
Identity = 28/88 (31.82%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 36  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QW 95
           + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W
Sbjct: 288 EHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSW 347

Query: 96  NNGESQMNKIVFIGRNLSEDVLSETFRA 117
            +   + N++V +GRNL +D+L + F A
Sbjct: 348 KDDTERTNRLVLLGRNLDKDILKQLFIA 375

[Close]

BLAST of Carg09273 vs. Swiss-Prot
Match: sp|Q8IUF1|CBWD2_HUMAN (COBW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-08
Identity = 28/88 (31.82%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 36  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QW 95
           + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W
Sbjct: 288 EHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSW 347

Query: 96  NNGESQMNKIVFIGRNLSEDVLSETFRA 117
            +   + N++V +GRNL +D+L + F A
Sbjct: 348 KDDTERTNRLVLLGRNLDKDILKQLFIA 375

[Close]

BLAST of Carg09273 vs. TrEMBL
Match: tr|A0A1S4DVA6|A0A1S4DVA6_CUCME (COBW domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488574 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-37
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP
Sbjct: 272 LCISEHHKVDLDKVHSWLEEILWEKKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 331

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA 119
           TRQW+NGESQMNKIVFIGRNL+EDVLS+TFR CA
Sbjct: 332 TRQWSNGESQMNKIVFIGRNLNEDVLSKTFRECA 365

[Close]

BLAST of Carg09273 vs. TrEMBL
Match: tr|A0A1S4DW33|A0A1S4DW33_CUCME (COBW domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488574 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-37
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 26  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C S H  +   +V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP
Sbjct: 242 LCISEHHKVDLDKVHSWLEEILWEKKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 301

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA 119
           TRQW+NGESQMNKIVFIGRNL+EDVLS+TFR CA
Sbjct: 302 TRQWSNGESQMNKIVFIGRNLNEDVLSKTFRECA 335

[Close]

BLAST of Carg09273 vs. TrEMBL
Match: tr|A0A0A0KFM6|A0A0A0KFM6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366420 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 37  QVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMN 96
           +V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQ N
Sbjct: 283 KVHSWLEEILWEKKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQTN 342

Query: 97  KIVFIGRNLSEDVLSETFRACA 119
           KIVFIGRNL+EDVLS+TFR CA
Sbjct: 343 KIVFIGRNLNEDVLSKTFRECA 364

[Close]

BLAST of Carg09273 vs. TrEMBL
Match: tr|A0A2I4H861|A0A2I4H861_9ROSI (COBW domain-containing protein 1 OS=Juglans regia OX=51240 GN=LOC109014360 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.0e-31
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 26  MCCSHPCLI-FQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVP 85
           +C   P  +   +VR WLEEILWD+K GM+VYRCKGVLS++NSDQLHTLQAVRE+YEIVP
Sbjct: 281 LCICQPQQVDLDKVRLWLEEILWDKKSGMEVYRCKGVLSVQNSDQLHTLQAVREIYEIVP 340

Query: 86  TRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 121
            R+W   E+QMNKIVFIG+NL+EDVL+++F  CA S
Sbjct: 341 ARKWKEEENQMNKIVFIGQNLNEDVLTDSFSTCATS 376

[Close]

BLAST of Carg09273 vs. TrEMBL
Match: tr|A0A2C9WH58|A0A2C9WH58_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G028800 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.0e-31
Identity = 63/97 (64.95%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 24  VCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIV 83
           VC+C S   +   +VR WLEEILWD+K GMDVYRCKGVL ++NSD+LHTLQAVRE+Y+IV
Sbjct: 280 VCICDSQQ-VDLDKVRLWLEEILWDKKDGMDVYRCKGVLRVQNSDELHTLQAVREIYDIV 339

Query: 84  PTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS 121
           P R+W   E+QMNKIVFIG NL+ED+L ++FR CA++
Sbjct: 340 PARKWKGSETQMNKIVFIGHNLNEDILFDSFRGCAMT 375

The following BLAST results are available for this feature:

BLAST of Carg09273 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962150.1	3.4e-41	89.58	COBW domain-containing protein 1 [Cucurbita moschata]	[more]
XP_023546079.1	1.3e-40	87.50	COBW domain-containing protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022997190.1	2.4e-39	86.46	COBW domain-containing protein 1 [Cucurbita maxima]	[more]
XP_016899917.1	8.6e-37	81.91	PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo] >XP_016899...	[more]
XP_016899920.1	8.6e-37	81.91	PREDICTED: COBW domain-containing protein 1 isoform X2 [Cucumis melo]	[more]

BLAST of Carg09273 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26520.1	3.1e-28	61.29	Cobalamin biosynthesis CobW-like protein	[more]
AT1G15730.1	8.7e-15	40.23	Cobalamin biosynthesis CobW-like protein	[more]
AT1G80480.1	6.2e-13	35.63	plastid transcriptionally active 17	[more]

BLAST of Carg09273 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5JTY5\|CBWD3_HUMAN	2.6e-08	32.95	COBW domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CBWD3 PE=2 SV=1	[more]
sp\|Q5RIA9\|CBWD5_HUMAN	2.6e-08	32.95	COBW domain-containing protein 5 OS=Homo sapiens OX=9606 GN=CBWD5 PE=2 SV=1	[more]
sp\|Q99MB4\|CBWD1_RAT	3.4e-08	33.72	COBW domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Cbwd1 PE=2 SV=...	[more]
sp\|Q9BRT8\|CBWD1_HUMAN	4.4e-08	31.82	COBW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CBWD1 PE=2 SV=1	[more]
sp\|Q8IUF1\|CBWD2_HUMAN	4.4e-08	31.82	COBW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CBWD2 PE=2 SV=1	[more]

BLAST of Carg09273 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DVA6\|A0A1S4DVA6_CUCME	5.7e-37	81.91	COBW domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
tr\|A0A1S4DW33\|A0A1S4DW33_CUCME	5.7e-37	81.91	COBW domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
tr\|A0A0A0KFM6\|A0A0A0KFM6_CUCSA	2.2e-36	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366420 PE=4 SV=1	[more]
tr\|A0A2I4H861\|A0A2I4H861_9ROSI	8.0e-31	66.67	COBW domain-containing protein 1 OS=Juglans regia OX=51240 GN=LOC109014360 PE=4 ...	[more]
tr\|A0A2C9WH58\|A0A2C9WH58_MANES	8.0e-31	64.95	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G028800 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036627	CobW-likC_sf
IPR011629	Cbl_biosynth_CobW-like_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09273-RA	Carg09273-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011629	Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal	PFAM	PF07683	CobW_C	coord: 32..117 e-value: 1.8E-16 score: 59.7
IPR036627	CobW-like, C-terminal domain superfamily	GENE3D	G3DSA:3.30.1220.10		coord: 7..118 e-value: 1.4E-20 score: 74.9
None	No IPR available	PANTHER	PTHR13748	COBW-RELATED	coord: 24..119
None	No IPR available	SUPERFAMILY	SSF90002	Hypothetical protein YjiA, C-terminal domain	coord: 37..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09273	Cla022016	Watermelon (97103) v1	carwmB0134
Carg09273	Csa6G366420	Cucumber (Chinese Long) v2	carcuB0158
Carg09273	MELO3C011429	Melon (DHL92) v3.5.1	carmeB0142
Carg09273	ClCG08G010310	Watermelon (Charleston Gray)	carwcgB0138
Carg09273	CSPI06G19580	Wild cucumber (PI 183967)	carcpiB0163
Carg09273	Cucsa.327790	Cucumber (Gy14) v1	carcgyB0175
Carg09273	CmaCh05G004420	Cucurbita maxima (Rimu)	carcmaB0189
Carg09273	CmoCh05G004660	Cucurbita moschata (Rifu)	carcmoB0196
Carg09273	Lsi08G008880	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09273	Cp4.1LG11g03820	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09273	CsGy6G019110	Cucumber (Gy14) v2	carcgybB0156
Carg09273	MELO3C011429.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09273	CsaV3_6G033600	Cucumber (Chinese Long) v3	carcucB0166
Carg09273	Cla97C08G153170	Watermelon (97103) v2	carwmbB0150
Carg09273	Bhi04G001130	Wax gourd	carwgoB0174

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09273	Silver-seed gourd	carcarB007
Carg09273	Cucurbita maxima (Rimu)	carcmaB0185
Carg09273	Cucurbita moschata (Rifu)	carcmoB0194
Carg09273	Cucurbita pepo (Zucchini)	carcpeB0207
Carg09273	Wax gourd	carwgoB0177