Carg09253 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09253
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	D-aminoacyl-tRNA deacylase
Location	Cucurbita_argyrosperma_scaffold_018 : 229869 .. 231930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGTTAGTGGCGGCAACGATAGTTTCGATCAATCCTGCAAACGAGCTCCTCACCATGCCCGGATGGCGCCCCGGTCCTTCTCTCCAGGTCCTCTAATCTCCTGCACCGATTTCCAATTTTTGAAGTGTTTCTGTTTCTCCCTTCGATTAATCGGATTTTTCTGTTGATTTGGAAATGAAAAGCTTCGCTAATCGAGAGGTGAGGCTGCTGCAACACGGTAGGAGCATTGTGGTTGAGGACGACCTAGATATTCGTTGGGAGGAGCTTGCTGGCGAGGTCGTGAACGAGGTCATTTTCTTCAGCCGGCATACTGCCATTTCGAATCGTCCTCCCCTCACTGTTCATCGGATTGGTACGATTCCAGTGTTTCTTTACTCAGTTTCTTTAATCAATATAGAAGATACGATGTTGTTTGGACTTAGAGGTTTTCATGCCCTAAATGTTTCATTCCCCTCTCCAACCATTGAGGTGTTACAAATGGTATCAGACTCTGACATTAGGCGATGTGTCAGGAGGTTGAGTTTCGAAGGGGTGGACACGAGGTGGTGTCCAAACAAAGACATTAGGTCTCGAAGGGAGTGGATTAGGGGAATCCCACATCGATTGGAGAAGGGAACGAGTGTCATCGAGGATGCTAGCCCCCAAAGGGGTGGATTGTGGGACCCCACATCAACTGTGGAGGTGAACGAAACATTGTTTACAAGGGTGTGGAAACCTCTCCCTAACACGCTGGGCCTAAAGGAGTGGATTAGGGATCCCACATCGATTGGAGAAGGGAACGAATGATATCGAGGACAATGATCCCGAAGGGGGTGGATTGTGATCTCTTCTATGAGATCCCACCTCGGTTGAAGAGGGAAACGATGTATTAGGATGTAGAACCCTCTCCCTAGCAGGCGCGTTTTTAAACCTTAAGGGGAAGCTCGAAAGAGAAAGCTCAAAAGAGGACAATATCTACTAGTGGTGGGCTTAGACCGTTACATTTCCAACTTTTATTTAAATTTATAATCGCTCTATCTGCTTGATAACATGTCACCGAAGCTAGCTCGGTCTCTTTGTATCATCATTTTATCGCTCATTTGTTGGTCTGCATTATTCAAAATAATTTCTAAGCCTACCCATGAAAAAGATGTCTATGTAATCACCGCTAGCAGATATTGTTCTCTTTGTGCTTTTAGCCTCCCTTTAAGTTTTAAAACACTGAGTTTCTACACTCTTGTAATGAATGCTTTATTATGAATTAAGTTACTAACTACATAACTCGATATGTTTTTAAGCGTTAACAACTTAATTTCGATGCCTTTATAATTTTCCCTTCCTCGATGATATGATTTGCATCGTTCTACCATTTGCTCAACAATATTATCTTTTCGTCGAACGTTTCTATGTTATATAATTTGATACCGTCATCGTGATGCAGGGAACATTACAAGAACAATGAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCATATGGACATAGTTCTGTAAGTATTGATCGGTCGGGCTGTTCTTCCTGTTAATGTGATCATTTCTTTAGCGTTCATAGGTTAAAAGGCTATTTTTAACTCTATACTTCGAGTCTCGTTCTATTTTAGTGTTTATACTTTCAATATATCTTTAAAAAATAGTTTTTTTTTTTTTAGCAAATTGAATTACGATAGATAATCATTTAATTTTGAAAAATAATCTTATAAATATTGTTTCTACCTATGAGTCTTTATCACGAGTTTTTGCCGCTTTGAAATATTTTCAAAATAGGTAGGTCGGTCTTTCTCGAGATCCCTTGAGCTGAAAGACATGAGACATACATTAAAAAATATGAACCAGGCTCTCGAACGCTCTTGTCTCGTAGGTGAGAAGATATAGGTTGGAAAAACATGTTAATAATCTCCGTAGGCCCTTATACTATTTTATTATCTCCGCAGCCCTAATGGAAGATCGGAACCAGTCAAAGTGAAATACGAACGACAAAGGTATCGGGGGGAGTTGGAGAGAGTCGATTAAAGCCATTCAAGGCTACTAAATTGGCTTCCTTGGTGGAG

mRNA sequence

ATGGCGACGGAACATTACAAGAACAATGAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCATATGGACATAGTTCTCCCTAATGGAAGATCGGAACCAGTCAAAGTGAAATACGAACGACAAAGGTATCGGGGGGAGTTGGAGAGAGTCGATTAAAGCCATTCAAGGCTACTAAATTGGCTTCCTTGGTGGAG

Coding sequence (CDS)

ATGGCGACGGAACATTACAAGAACAATGAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCATATGGACATAGTTCTCCCTAATGGAAGATCGGAACCAGTCAAAGTGAAATACGAACGACAAAGGTATCGGGGGGAGTTGGAGAGAGTCGATTAA

Protein sequence

MATEHYKNNEVLLGIEGGHYAPRHMDIVLPNGRSEPVKVKYERQRYRGELERVD

Homology

[Close]

BLAST of Carg09253 vs. NCBI nr
Match: XP_008445425.1 (PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 201 EHNKNNKVLLGIGGGHYAPRHMDIVLKDG 229

[Close]

BLAST of Carg09253 vs. NCBI nr
Match: XP_011657410.1 (PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis sativus] >KGN47672.1 hypothetical protein Csa_6G367180 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 201 EHNKNNKVLLGIGGGHYAPRHMDIVLKDG 229

[Close]

BLAST of Carg09253 vs. NCBI nr
Match: XP_022132337.1 (D-aminoacyl-tRNA deacylase isoform X2 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 201 EHNKNNKVLLGIGGGHYAPRHMDIVLKDG 229

[Close]

BLAST of Carg09253 vs. NCBI nr
Match: XP_022132335.1 (D-aminoacyl-tRNA deacylase isoform X1 [Momordica charantia] >XP_022132336.1 D-aminoacyl-tRNA deacylase isoform X1 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 202 EHNKNNKVLLGIGGGHYAPRHMDIVLKDG 230

[Close]

BLAST of Carg09253 vs. NCBI nr
Match: XP_022951217.1 (D-aminoacyl-tRNA deacylase [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 203 EHSKNNKVLLGIGGGHYAPRHMDIVLKDG 231

[Close]

BLAST of Carg09253 vs. TAIR10
Match: AT2G03800.1 (D-aminoacyl-tRNA deacylases)

HSP 1 Score: 40.4 bits (93), Expect = 4.0e-04
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 10  EVLLGIEGGHYAPRHMDIVL 30
           +VLLGI GGHYAPRHMDI L
Sbjct: 207 KVLLGIGGGHYAPRHMDIAL 226

[Close]

BLAST of Carg09253 vs. TrEMBL
Match: tr|A0A1S3BCQ0|A0A1S3BCQ0_CUCME (D-aminoacyl-tRNA deacylase OS=Cucumis melo OX=3656 GN=LOC103488450 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 201 EHNKNNKVLLGIGGGHYAPRHMDIVLKDG 229

[Close]

BLAST of Carg09253 vs. TrEMBL
Match: tr|A0A0A0KGZ7|A0A0A0KGZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367180 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 4   EHYKNNEVLLGIEGGHYAPRHMDIVLPNG 33
           EH KNN+VLLGI GGHYAPRHMDIVL +G
Sbjct: 201 EHNKNNKVLLGIGGGHYAPRHMDIVLKDG 229

The following BLAST results are available for this feature:

BLAST of Carg09253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445425.1	8.7e-05	82.76	PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis melo]	[more]
XP_011657410.1	8.7e-05	82.76	PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis sativus] >KGN47672.1 hypothetical...	[more]
XP_022132337.1	8.7e-05	82.76	D-aminoacyl-tRNA deacylase isoform X2 [Momordica charantia]	[more]
XP_022132335.1	8.7e-05	82.76	D-aminoacyl-tRNA deacylase isoform X1 [Momordica charantia] >XP_022132336.1 D-am...	[more]
XP_022951217.1	8.7e-05	82.76	D-aminoacyl-tRNA deacylase [Cucurbita moschata]	[more]

BLAST of Carg09253 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03800.1	4.0e-04	85.00	D-aminoacyl-tRNA deacylases	[more]

BLAST of Carg09253 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09253 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCQ0\|A0A1S3BCQ0_CUCME	5.8e-05	82.76	D-aminoacyl-tRNA deacylase OS=Cucumis melo OX=3656 GN=LOC103488450 PE=4 SV=1	[more]
tr\|A0A0A0KGZ7\|A0A0A0KGZ7_CUCSA	5.8e-05	82.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367180 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016788	hydrolase activity, acting on ester bonds
GO:0051499	D-aminoacyl-tRNA deacylase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007508	DtdA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051499	D-aminoacyl-tRNA deacylase activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09253-RA	Carg09253-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007508	D-aminoacyl-tRNA deacylase DtdA	PFAM	PF04414	tRNA_deacylase	coord: 6..31 e-value: 1.4E-4 score: 21.4
None	No IPR available	SUPERFAMILY	SSF142535	AF0625-like	coord: 4..32

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09253	Silver-seed gourd	carcarB164
Carg09253	Cucumber (Gy14) v2	carcgybB0156
Carg09253	Cucumber (Gy14) v1	carcgyB0175
Carg09253	Cucurbita maxima (Rimu)	carcmaB0185
Carg09253	Cucurbita maxima (Rimu)	carcmaB0189
Carg09253	Cucurbita moschata (Rifu)	carcmoB0194
Carg09253	Cucurbita moschata (Rifu)	carcmoB0196
Carg09253	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09253	Cucurbita pepo (Zucchini)	carcpeB0207
Carg09253	Wild cucumber (PI 183967)	carcpiB0163
Carg09253	Cucumber (Chinese Long) v2	carcuB0158
Carg09253	Cucumber (Chinese Long) v3	carcucB0166
Carg09253	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09253	Melon (DHL92) v3.5.1	carmeB0142
Carg09253	Melon (DHL92) v3.6.1	carmedB0146
Carg09253	Watermelon (Charleston Gray)	carwcgB0138
Carg09253	Watermelon (97103) v1	carwmB0134
Carg09253	Watermelon (97103) v2	carwmbB0150
Carg09253	Wax gourd	carwgoB0177