Carg09104 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09104
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Orn/Lys/Arg decarboxylase, C-terminal
Location	Cucurbita_argyrosperma_scaffold_063 : 579432 .. 581407 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAAAAGGCATTATGCCCGGGTGTTGTTATGCATAATGCCACTATTTGAGGTTTGTTTAAGCTTCAACAAGCAAACCAAGCAATGGATACCTTTTACAGAATGATTAGCATTGGCATCCTAGCTGACAGTACTAGTTATGCTGTGATCATTGATGGGTTATGTGATACCAATAAAATTGAAGAAGCTAAGAGATTCTGGAAAGATACAGTCTGGTCCTCAAAGATTAATGATAGTTTTGTTTAATTTGCTATTCTTAAAGGGCTTTGCTACACTGGCAAATATAATGAAGCTTTCCATTTCCGTATGAACTAGCAGAGGCTGAGGTTTCTCCAAATATCTTCTCCTAGGATATCGTGTTCAATACTGGATGTAAGTTGGGACTAAGAGGAGAAGCATATCGACTGCACAGAGATGAAAAAGAACGGGTTAGCCGCTGATTCTAACATGAAGGATTCAAAGTGAGATGACACTGTAGCATGATGTTGTCCCTCTCATATTGTCCACATTCCACATTTTGGACATGGCTTTACTTTTAGTTTTCCTAAAAAGGTCTCGTACCAATGAAGATATATTCTTTACTTATCTATAATCAATCCCTTAGTCGATATGAGACTCATCTTCCAACAATCCTCCCCTCGAACAAAGTATATCATAGAGCCTCCCCCGAAGCCTATAGAGCCCTCGAACAAAGTACACCATTTGTTCGACACTTGATACACTTTTGACTACTTTTTCGAGGCTTCCAACTTTTTTGTTCGACATTTGAGGATTCTATTGATATGACTAAGTTAAAGGTATGACTCTAATACCATGTTAAGAATCACGTACTTTCATAATGACATGATATTGTTTACTTTGAACATAAGTTCTCATGATTTACTTTTAGTTTTTCCAAAAGGCTACGTATCAACGAAGATGTATTCCTTATTTATAAATCTATGATTAACCCTTAATTAGTCAATGTAGGACTCTTCTCCTAGCAATCCTCAACAGATCGAACGTGTCCCGGACCAGACAAACTTGGAAAGATTTGTAAGTGTAAATGAAATTGATGTTTAGACAGATGTAAGACCTTGGTCTTTCTGCACAGAGATCAAACGTCCAAAACATCCAATCCTGTGATTCTATTCTAGAGCCATCATGCTTTTCCTCTTAGTAAAAGGATCATGCGTTCAATACGTGGTTTCAAAACCATGAAAGCTGAGAGGAACAGACCTTCCAAAACATTGCTGAATTCATTTGCAGCTCCTCTGTAGAGGCTTGTTGCATTCTTCATAGACTTGTATGTTTCCTGTCACAACCCTCAATTAATTGCCAGTGTGGACTTGGAGAAAAACAAAATCTGAGGAACATTTTTCACTGTTCTAATTTTCACATTCATGATTATCTTACTATCGTTCACTTTCGTTTTAAGAGAGAGAAGGGACACAGGATCTGGTACATATGCTAGTCTATGTTGAATATCTGTCGAATCGAAAACGCTAACCATCAAGTTCAGGACATTTGAACATTAACTCATTTTGCTTTTCTGATTCTCAGGTAACCATCTGTTCTAAAGGCGATGAAACGCAATGCAAGTTGGAAGACAGCTTACTTTGGTCGAGTGGTTACCAAGTGATCAGGTAAAGCTTTCTATTACTTTGTTTTATCATTTGCACACTAAGGATCTAATCACATATACACAAAAGTTCTTGCAAAAAGGAAAAAAGGTTAAAAAAGATGCAATCACAATCATATCGACCTCTTTTCACATTAGGCACTGATTCATTTTCATCAGTTCATTAGCCTTTTTGATTTGTGGACTGCATTTTATGCATAATTTTTATAACTTTGCCTTGCATTTTATAAATTGAACTTTAATATTGTATTTGGTTCACAAACTTTTTAGGTTTCTAAATTTTAATAATGTCTTCCAATTTTTTAATTTTGTTTCTAAAAGTTCTGAGATTAGTTTAGAGTTTGTCAAATAA

mRNA sequence

ATGCCAGAAAAGGCATTATGCCCGGGTTTGTTTAAGCTTCAACAAGCAAACCAAGCAATGGATACCTTTTACAGAATGATTAGCATTGGCATCCTAGCTGACAGTACTAGTTATGCTGTGATCATTGATGGGTTATGTGATACCAATAAAATTGAAGAAGCTAAGAGATTCTGGAAAGATACAGTCTGGTCCTCAAAGATTAATGATAGTTTTGGCTTTGCTACACTGGCAAATATAATGAAGCTTTCCATTTCCGATATCGTGTTCAATACTGGATGTAAGTTGGGACTAAGAGGAGAAGCATATCGACTGCACAGAGATGAAAAAGAACGGGTAACCATCTGTTCTAAAGGCGATGAAACGCAATGCAAGTTGGAAGACAGCTTACTTTGGTCGAGTGGTTACCAAGTGATCAGTTCTGAGATTAGTTTAGAGTTTGTCAAATAA

Coding sequence (CDS)

ATGCCAGAAAAGGCATTATGCCCGGGTTTGTTTAAGCTTCAACAAGCAAACCAAGCAATGGATACCTTTTACAGAATGATTAGCATTGGCATCCTAGCTGACAGTACTAGTTATGCTGTGATCATTGATGGGTTATGTGATACCAATAAAATTGAAGAAGCTAAGAGATTCTGGAAAGATACAGTCTGGTCCTCAAAGATTAATGATAGTTTTGGCTTTGCTACACTGGCAAATATAATGAAGCTTTCCATTTCCGATATCGTGTTCAATACTGGATGTAAGTTGGGACTAAGAGGAGAAGCATATCGACTGCACAGAGATGAAAAAGAACGGGTAACCATCTGTTCTAAAGGCGATGAAACGCAATGCAAGTTGGAAGACAGCTTACTTTGGTCGAGTGGTTACCAAGTGATCAGTTCTGAGATTAGTTTAGAGTTTGTCAAATAA

Protein sequence

MPEKALCPGLFKLQQANQAMDTFYRMISIGILADSTSYAVIIDGLCDTNKIEEAKRFWKDTVWSSKINDSFGFATLANIMKLSISDIVFNTGCKLGLRGEAYRLHRDEKERVTICSKGDETQCKLEDSLLWSSGYQVISSEISLEFVK

Homology

[Close]

BLAST of Carg09104 vs. NCBI nr
Match: XP_022134613.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-18
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 23  FYRMISIGILADSTSYAVIIDGLCDTNKIEEAKRFWKDTVWSSKINDSFGFAT--LANIM 82
           F RM+  G  ADST+YAV+IDGLCD+NKIEEAKRFWKD VW SKI +SF ++T  L N  
Sbjct: 511 FDRMVRNGAXADSTTYAVVIDGLCDSNKIEEAKRFWKDIVWPSKIRNSFVYSTXGLCNNG 570

Query: 83  KLSIS-------------DIVFNTGCKLGLRGEAYRL 105
           K S +             +IV NT CK GL+GEAY+L
Sbjct: 571 KFSEACDFLYELVDSGXYNIVINTACKFGLKGEAYQL 607

[Close]

BLAST of Carg09104 vs. NCBI nr
Match: XP_013718671.1 (pentatricopeptide repeat-containing protein At3g18020-like [Brassica napus])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 1   MPEKALCP----------GLFKLQQANQAMDTFYRMISIGILADSTSYAVIIDGLCDTNK 60
           MPE  L P          GLFKL +  +AM  F +M   G+ AD+T+YA+IIDGLC T +
Sbjct: 97  MPENGLKPSVVTYNAVMRGLFKLPKGVEAMCVFDQMAKAGVCADNTTYAIIIDGLCATGQ 156

Query: 61  IEEAKRFWKDTVWSSKINDSFGFATLANIMKLSISDIVFNTGCKLGLRGEAYRL 105
           ++ AKRFW D +W S  +D++ ++   ++             C+ GLR EAY++
Sbjct: 157 VDTAKRFWDDVIWPSGRHDAYVYSASLSV-------------CRSGLRREAYQI 197

[Close]

BLAST of Carg09104 vs. NCBI nr
Match: GAV87972.1 (PPR domain-containing protein/PPR_2 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 30  GILADSTSYAVIIDGLCDTNKIEEAKRFWKDTVWSSKINDSF 72
           G+ ADS +YA++IDGLC++ +I+EAKRFW D +W SKI+D++
Sbjct: 576 GVAADSATYAIVIDGLCESGQIDEAKRFWDDVIWPSKIHDNY 617

[Close]

BLAST of Carg09104 vs. NCBI nr
Match: KVI01448.1 (Orn/Lys/Arg decarboxylase, C-terminal, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 63.2 bits (152), Expect = 8.8e-07
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 17  NQAMDTFYRMISIGILADSTSYAVIIDGLCDTNKIEEAKRFWKDTVW 64
           N+A+D F  M   G++ADST++A++IDGLC  N+IEEAK FW D +W
Sbjct: 637 NEAVDVFNSMAGGGVVADSTTHAIMIDGLCKCNRIEEAKVFWDDFIW 683

[Close]

BLAST of Carg09104 vs. NCBI nr
Match: OTG09562.1 (putative pentatricopeptide repeat protein [Helianthus annuus])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 33  ADSTSYAVIIDGLCDTNKIEEAKRFWKDTVWSSKINDSFGFATLANIM------------ 92
           AD T++A+II GLC+ ++++EAK FW D VW SK++DSF ++ +   +            
Sbjct: 442 ADCTTHAIIIGGLCECDRVDEAKVFWDDVVWPSKVHDSFVYSAMVKGLCCGGKFNEACDF 501

Query: 93  ---------KLSI--SDIVFNTGCKLGLRGEAYRL 105
                    +L++   +I+    CKLGL+ +AY++
Sbjct: 502 AYELVDCGVRLNVVNYNILIEGACKLGLKKDAYQI 536

[Close]

BLAST of Carg09104 vs. TrEMBL
Match: tr|A0A0D3CJ37|A0A0D3CJ37_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MPEKALCP----------GLFKLQQANQAMDTFYRMISIGILADSTSYAVIIDGLCDTNK 60
           MPE  L P          GLFKL +  +AM  F +M   G+ AD+T+YA+IIDGLC T +
Sbjct: 97  MPENGLKPSVVTYNAVMRGLFKLPKGVEAMCVFDQMAKAGVCADNTTYAIIIDGLCATGQ 156

Query: 61  IEEAKRFWKDTVWSSKINDSFG 73
           ++ AKRFW D +W S  +D+ G
Sbjct: 157 VDTAKRFWDDVIWPSGRHDASG 178

[Close]

BLAST of Carg09104 vs. TrEMBL
Match: tr|M4E0H4|M4E0H4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.1e-09
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 1   MPEKALCP----------GLFKLQQANQAMDTFYRMISIGILADSTSYAVIIDG-LCDTN 60
           MPE  L P          GLFKL++   AM  F +M   G+ AD+T+YA+IIDG LC T 
Sbjct: 21  MPENGLKPIVVTYNAVMRGLFKLRKGVDAMCVFDQMAKAGVSADNTTYAIIIDGYLCLTG 80

Query: 61  KIEEAKRFWKDTVWSSKINDSFGFA 75
           +++ AKRFW D +W S  +D++ ++
Sbjct: 81  QVDTAKRFWDDVIWPSGRHDAYVYS 105

[Close]

BLAST of Carg09104 vs. TrEMBL
Match: tr|A0A1Q3D691|A0A1Q3D691_CEPFO (PPR domain-containing protein/PPR_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31396 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 30  GILADSTSYAVIIDGLCDTNKIEEAKRFWKDTVWSSKINDSF 72
           G+ ADS +YA++IDGLC++ +I+EAKRFW D +W SKI+D++
Sbjct: 576 GVAADSATYAIVIDGLCESGQIDEAKRFWDDVIWPSKIHDNY 617

[Close]

BLAST of Carg09104 vs. TrEMBL
Match: tr|A0A103Y2Q1|A0A103Y2Q1_CYNCS (Orn/Lys/Arg decarboxylase, C-terminal (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_020280 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.8e-07
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 17  NQAMDTFYRMISIGILADSTSYAVIIDGLCDTNKIEEAKRFWKDTVW 64
           N+A+D F  M   G++ADST++A++IDGLC  N+IEEAK FW D +W
Sbjct: 637 NEAVDVFNSMAGGGVVADSTTHAIMIDGLCKCNRIEEAKVFWDDFIW 683

[Close]

BLAST of Carg09104 vs. TrEMBL
Match: tr|A0A251TG01|A0A251TG01_HELAN (Putative pentatricopeptide repeat protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0277831 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-07
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 33  ADSTSYAVIIDGLCDTNKIEEAKRFWKDTVWSSKINDSFGFATLANIM------------ 92
           AD T++A+II GLC+ ++++EAK FW D VW SK++DSF ++ +   +            
Sbjct: 442 ADCTTHAIIIGGLCECDRVDEAKVFWDDVVWPSKVHDSFVYSAMVKGLCCGGKFNEACDF 501

Query: 93  ---------KLSI--SDIVFNTGCKLGLRGEAYRL 105
                    +L++   +I+    CKLGL+ +AY++
Sbjct: 502 AYELVDCGVRLNVVNYNILIEGACKLGLKKDAYQI 536

The following BLAST results are available for this feature:

BLAST of Carg09104 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134613.1	5.0e-18	55.67	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momo...	[more]
XP_013718671.1	1.4e-12	37.72	pentatricopeptide repeat-containing protein At3g18020-like [Brassica napus]	[more]
GAV87972.1	2.3e-07	57.14	PPR domain-containing protein/PPR_2 domain-containing protein [Cephalotus follic...	[more]
KVI01448.1	8.8e-07	55.32	Orn/Lys/Arg decarboxylase, C-terminal, partial [Cynara cardunculus var. scolymus...	[more]
OTG09562.1	1.5e-06	32.63	putative pentatricopeptide repeat protein [Helianthus annuus]	[more]

BLAST of Carg09104 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg09104 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09104 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D3CJ37\|A0A0D3CJ37_BRAOL	1.5e-10	45.12	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
tr\|M4E0H4\|M4E0H4_BRARP	8.1e-09	42.35	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|A0A1Q3D691\|A0A1Q3D691_CEPFO	1.5e-07	57.14	PPR domain-containing protein/PPR_2 domain-containing protein OS=Cephalotus foll...	[more]
tr\|A0A103Y2Q1\|A0A103Y2Q1_CYNCS	5.8e-07	55.32	Orn/Lys/Arg decarboxylase, C-terminal (Fragment) OS=Cynara cardunculus var. scol...	[more]
tr\|A0A251TG01\|A0A251TG01_HELAN	9.9e-07	32.63	Putative pentatricopeptide repeat protein OS=Helianthus annuus OX=4232 GN=HannXR...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09104-RA	Carg09104-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 4..64 e-value: 9.5E-8 score: 33.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 37..60 e-value: 0.0017 score: 16.4
None	No IPR available	PANTHER	PTHR24015:SF310	SUBFAMILY NOT NAMED	coord: 6..75
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 6..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09104	MELO3C017354	Melon (DHL92) v3.5.1	carmeB0599
Carg09104	CmaCh11G003080	Cucurbita maxima (Rimu)	carcmaB0830
Carg09104	MELO3C017354.2	Melon (DHL92) v3.6.1	carmedB0606

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09104	Silver-seed gourd	carcarB416
Carg09104	Silver-seed gourd	carcarB537
Carg09104	Cucumber (Gy14) v2	carcgybB0594
Carg09104	Cucumber (Gy14) v2	carcgybB0595
Carg09104	Cucumber (Gy14) v1	carcgyB0668
Carg09104	Cucumber (Gy14) v1	carcgyB0670
Carg09104	Cucurbita maxima (Rimu)	carcmaB0828
Carg09104	Cucurbita maxima (Rimu)	carcmaB0832
Carg09104	Cucurbita maxima (Rimu)	carcmaB0834
Carg09104	Cucurbita moschata (Rifu)	carcmoB0806
Carg09104	Cucurbita moschata (Rifu)	carcmoB0808
Carg09104	Cucurbita moschata (Rifu)	carcmoB0810
Carg09104	Cucurbita moschata (Rifu)	carcmoB0812
Carg09104	Cucurbita pepo (Zucchini)	carcpeB0840
Carg09104	Cucurbita pepo (Zucchini)	carcpeB0843
Carg09104	Cucurbita pepo (Zucchini)	carcpeB0846
Carg09104	Cucurbita pepo (Zucchini)	carcpeB0847
Carg09104	Wild cucumber (PI 183967)	carcpiB0628
Carg09104	Wild cucumber (PI 183967)	carcpiB0629
Carg09104	Cucumber (Chinese Long) v2	carcuB0622
Carg09104	Cucumber (Chinese Long) v2	carcuB0623
Carg09104	Cucumber (Chinese Long) v3	carcucB0629
Carg09104	Cucumber (Chinese Long) v3	carcucB0630
Carg09104	Bottle gourd (USVL1VR-Ls)	carlsiB538
Carg09104	Bottle gourd (USVL1VR-Ls)	carlsiB540
Carg09104	Melon (DHL92) v3.5.1	carmeB0598
Carg09104	Melon (DHL92) v3.6.1	carmedB0605
Carg09104	Watermelon (Charleston Gray)	carwcgB0579
Carg09104	Watermelon (Charleston Gray)	carwcgB0581
Carg09104	Watermelon (97103) v1	carwmB0592
Carg09104	Watermelon (97103) v1	carwmB0594
Carg09104	Watermelon (97103) v2	carwmbB0621
Carg09104	Watermelon (97103) v2	carwmbB0623
Carg09104	Wax gourd	carwgoB0705
Carg09104	Wax gourd	carwgoB0710