Carg09103 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09103
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_063 : 577717 .. 579412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTGTGATCCCCCCCGATTTATGCTCTCTGTTGCTTCCCGGTGTGTATTGGATGAACAGATGTGTGATGTTCTTATTGCTTGTTTGCTTGATTATCGATCGCCGTATTGTGCTTTGTTAGGAATCACGACTCTCCACAATGCTATGATATTGAACACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTTCCCAATAATCCTCAATACAATCCTCCTCGAACAAAGCACACTATAGCCTCAGTACACCATTTCTTTAGTCAGATTTTTGAATACACCTTCGAGGCTCGCCATTCTTTGTTCGATCGTTGAGGATTCCGCGATGTAGGTATCACGAACTCTCGACTCTCCACATGGTATGATATTGAACACTTTGTAAAGTTCATGGCTTTGCTTTGGGCTTCCCCAAAAGCCTCATAACATGTAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACATGCTTTGCGTTTGTTTGTTTGTTTTTTGTTTTGTTTGATGCTTTGCCTGAGTTTTTTCATTCTGTAGTGTATTATAATCGCTTGATCGATCAGTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTCTTTGATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTTCCTGTTCAACCTTGATCGATGGATACTGCCGTGTTGGTAACGTATCTGCTGCCGAGTAACTGTTTGATGAAATGCCGTAGAACGATGTGGAGTCTAACTCACTTACATACAGGGTTCTAATTCATAGGTTTCCTTACGAGCGGGATTTTGGAACAGGGAAGGCGTTGATGTGAAAGCTTCCGGAGAAGATGAAGGGAGAAAAGGATCCCTCTGTGTGTTGGATGAAAGTCCCATCGGCTGGAATGATCATGGGTTTATAATTAAGGAATACTATTTTCATTAGAACGAGGCCTTTTTGGGGAAGCCCAAAGCAAAACCATGAGAGCTTATGCTCAAAGTAGACTATATCATACCATCGTGGAGAGTCATGAGTGCAGTTTTCGCCCGCGGGTTCTTTCAACCAGGTGTTCTTAATTGCAGAAGATATGCCTCAGGGAGTGTGCCCGAGGAATTTGCTTATGGGCAGAGGATAGATTCACGTTGTAAAGCTAAAAAACGTCATGGGGCCCTGAGAATTGTATAATTATAATGACGAAGAGAGGACTTATTCCTGGTTTTACTATCATATAATTCTATTATCCCTGGGCTTAGCAAGGAGGGAAGTTGTATGCGGGCGTATCAGTTGTTGGTGGAAGGAATGGAATTTGGATACTCACCATCTGAACATACGTATAAGGTTCTTTTAGAAGGTCTTTGCCAAGGCTAATGATAATGGTACACTTGTTCTAGTGCTTCAAAGCAACTGTCAACCTGATGTTATTACCCTCCATACAGTCATGAAGGGATTTTGCAAGGTTGAAACCATTGGAGAAGCTCTAAAGGTATTAAATGATATGATGATCGGTAAATTTTGTGTTCCTGATGAAGTAACCTTCAATTATATGTGGCTTACTGAATGTTTGGAAGATCCAGGAATCTCTTGA

mRNA sequence

ATGGCCTCTGTGATCCCCCCCGATTTATGCTCTCTGTTGCTTCCCGCTCATAGGGTTTTCTTTGATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTTCCTGTTCAACCTTGATCGATGGATACTGCCGTGTTGGTAACGTATCTGCTGCCGAAGAGGACTTATTCCTGGTTTTACTATCATATAATTCTATTATCCCTGGGCTTAGCAAGGAGGGAAGTTGTATGCGGGCGTATCAGTTGTTGGTGGAAGGAATGGAATTTGGATACTCACCATCTGAACATACGTATAAGGTCTTTGCCAAGGCTAATGATAATGGTACACTTGTTCTAGTGCTTCAAAGCAACTGTCAACCTGATGTTATTACCCTCCATACAGTCATGAAGGGATTTTGCAAGGTTGAAACCATTGGAGAAGCTCTAAAGGTATTAAATGATATGATGATCGGTAAATTTTGTGTTCCTGATGAAGTAACCTTCAATTATATGTGGCTTACTGAATGTTTGGAAGATCCAGGAATCTCTTGA

Coding sequence (CDS)

ATGGCCTCTGTGATCCCCCCCGATTTATGCTCTCTGTTGCTTCCCGCTCATAGGGTTTTCTTTGATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTTCCTGTTCAACCTTGATCGATGGATACTGCCGTGTTGGTAACGTATCTGCTGCCGAAGAGGACTTATTCCTGGTTTTACTATCATATAATTCTATTATCCCTGGGCTTAGCAAGGAGGGAAGTTGTATGCGGGCGTATCAGTTGTTGGTGGAAGGAATGGAATTTGGATACTCACCATCTGAACATACGTATAAGGTCTTTGCCAAGGCTAATGATAATGGTACACTTGTTCTAGTGCTTCAAAGCAACTGTCAACCTGATGTTATTACCCTCCATACAGTCATGAAGGGATTTTGCAAGGTTGAAACCATTGGAGAAGCTCTAAAGGTATTAAATGATATGATGATCGGTAAATTTTGTGTTCCTGATGAAGTAACCTTCAATTATATGTGGCTTACTGAATGTTTGGAAGATCCAGGAATCTCTTGA

Protein sequence

MASVIPPDLCSLLLPAHRVFFDMKSERQCPNVVSCSTLIDGYCRVGNVSAAEEDLFLVLLSYNSIIPGLSKEGSCMRAYQLLVEGMEFGYSPSEHTYKVFAKANDNGTLVLVLQSNCQPDVITLHTVMKGFCKVETIGEALKVLNDMMIGKFCVPDEVTFNYMWLTECLEDPGIS

Homology

[Close]

BLAST of Carg09103 vs. NCBI nr
Match: XP_019077833.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g18020 isoform X3 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 14  LPAHRVFFDMKSERQCPNVVSCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSI 73
           L   R+  DM   +          +ID  CR G    A   ++++        L+SYN I
Sbjct: 295 LEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYI 354

Query: 74  IPGLSKEGSCMRAYQLLVEGMEFGYSPSEHTYKVFAKANDNGTLVLVLQSNCQPDVITLH 133
           + GLSKEG CMRAYQLL EG+EFGY  SEHTYKV  +A        + ++ CQPDVITL+
Sbjct: 355 VHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRD--ADLCKTQCQPDVITLN 414

Query: 134 TVMKGFCKVETIGEALKVLNDMMIGK 152
           TV+ GFCK+  + EALKVL+DM++GK
Sbjct: 415 TVINGFCKMGRVEEALKVLDDMVMGK 438

[Close]

BLAST of Carg09103 vs. NCBI nr
Match: XP_019423092.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Lupinus angustifolius] >OIW17503.1 hypothetical protein TanjilG_22615 [Lupinus angustifolius])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 67/166 (40.36%), Postives = 83/166 (50.00%), Query Frame = 0


Query: 38  LIDGYCRVGNVSAA--------EEDLFLVLLSYNSIIPGLSKEGSCMRAYQLLVEGMEFG 97
           +I   C+VG    A        +  LF  ++SYN II GLSK+G CMRAYQLL EG+EFG
Sbjct: 277 MIHSLCKVGRYHGASRIVYIMKKRGLFPSMVSYNYIIHGLSKDGDCMRAYQLLEEGVEFG 336

Query: 98  YSPSEHTYKVFAKA----------------------------------------NDN--- 153
           +   EHTYKV  +A                                        N     
Sbjct: 337 FVLCEHTYKVLVEALCQALDVDKAREVLKVMLCKEGVDKTRIYNIYLRALCVVKNPTELL 396

[Close]

BLAST of Carg09103 vs. NCBI nr
Match: XP_009356045.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Pyrus x bretschneideri])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 72/170 (42.35%), Postives = 87/170 (51.18%), Query Frame = 0


Query: 34  SCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSIIPGLSK--EGSCMRAYQLLV 93
           S   +ID  C+      A   ++++        L SYNSI+ GLSK  EG CMRAYQLL 
Sbjct: 315 SYGQMIDSLCKARRHHGASRIVYIMRSRGFVPKLTSYNSILHGLSKEGEGGCMRAYQLLE 374

Query: 94  EGMEFGYSPSEHTYKVF----------AKAND---------------------------N 151
           EG+ FGY PSE+TYKV            KA +                           N
Sbjct: 375 EGVNFGYFPSEYTYKVLLEGLCQESDVKKAREVLEYMLKKEGVDRTRIYNIYLRALCLVN 434

[Close]

BLAST of Carg09103 vs. NCBI nr
Match: PIA24947.1 (hypothetical protein AQUCO_14200017v1 [Aquilegia coerulea])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 59/134 (44.03%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 59  LLSYNSIIPGLSKEGSCMRAYQLLVEGMEFGYSPSEHTYKVFA----------KAND--- 118
           L+SYNSI+ GLSKEG CMRAYQL  EG+EFGY P E TYKV            KA D   
Sbjct: 10  LVSYNSIVHGLSKEGGCMRAYQLFKEGIEFGYLPLEPTYKVLVEALCRASHIDKAKDVLQ 69

Query: 119 -----------------------------NGTLVLVLQSNCQPDVITLHTVMKGFCKVET 151
                                           LV +LQ+ CQPDV+TL+TV+ GFCK+  
Sbjct: 70  FMLKKGLDQTRSYNIFLRALSLMDSPSELLNILVSMLQNQCQPDVVTLNTVINGFCKMRR 129

[Close]

BLAST of Carg09103 vs. NCBI nr
Match: OAY68736.1 (Pentatricopeptide repeat-containing protein [Ananas comosus])

HSP 1 Score: 97.1 bits (240), Expect = 6.5e-17
Identity = 64/188 (34.04%), Postives = 85/188 (45.21%), Query Frame = 0


Query: 18  RVFFDMKSERQCPNVVSCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSIIPGL 77
           R+  DM   R      +   +ID  CR G    A   ++++         +SYN I+ GL
Sbjct: 322 RIAEDMPQGRSVAEEFAYGQMIDSLCRAGRHHGASRIVYIMRKRGLAPSSVSYNCIVHGL 381

Query: 78  SK--EGSCMRAYQLLVEGMEFGYSPSEHTYKV----------FAKANDNGTLVL------ 137
           SK   G CMRAYQLL EG EFGY P E TYK             KA D   LVL      
Sbjct: 382 SKRRRGGCMRAYQLLKEGAEFGYFPPEPTYKALVEGLCREKDLVKAKDVLELVLRRSDGD 441

Query: 138 -----------------------------VLQSNCQPDVITLHTVMKGFCKVETIGEALK 151
                                        +L+  C+PDVITL+T++ GFCK+  +GEA K
Sbjct: 442 ADRTRIYNIFLAALRMVDNPSEQLNVVVTMLRKQCRPDVITLNTLVHGFCKLGRVGEAKK 501

[Close]

BLAST of Carg09103 vs. TAIR10
Match: AT3G05240.1 (mitochondrial editing factor 19)

HSP 1 Score: 41.2 bits (95), Expect = 7.7e-04
Identity = 24/79 (30.38%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 31  NVVSCSTLIDGYCRVGNVSAAEEDLF-----LVLLSYNSIIPGLSKEGSCMRAYQLLVEG 90
           NV+  ++LID Y + G++  A   LF       L+S+NSII G S+ G    A  + ++ 
Sbjct: 250 NVILATSLIDMYAKCGDLRTARY-LFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDM 309

Query: 91  MEFGYSPSEHTYKVFAKAN 105
           ++ G +P + T+    +A+
Sbjct: 310 LDLGIAPDKVTFLSVIRAS 327

[Close]

BLAST of Carg09103 vs. TrEMBL
Match: tr|A0A2G5C2B1|A0A2G5C2B1_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_14200017v1 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.8e-19
Identity = 59/134 (44.03%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 59  LLSYNSIIPGLSKEGSCMRAYQLLVEGMEFGYSPSEHTYKVFA----------KAND--- 118
           L+SYNSI+ GLSKEG CMRAYQL  EG+EFGY P E TYKV            KA D   
Sbjct: 10  LVSYNSIVHGLSKEGGCMRAYQLFKEGIEFGYLPLEPTYKVLVEALCRASHIDKAKDVLQ 69

Query: 119 -----------------------------NGTLVLVLQSNCQPDVITLHTVMKGFCKVET 151
                                           LV +LQ+ CQPDV+TL+TV+ GFCK+  
Sbjct: 70  FMLKKGLDQTRSYNIFLRALSLMDSPSELLNILVSMLQNQCQPDVVTLNTVINGFCKMRR 129

[Close]

BLAST of Carg09103 vs. TrEMBL
Match: tr|A0A199UVS7|A0A199UVS7_ANACO (Pentatricopeptide repeat-containing protein OS=Ananas comosus OX=4615 GN=ACMD2_03539 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 64/188 (34.04%), Postives = 85/188 (45.21%), Query Frame = 0


Query: 18  RVFFDMKSERQCPNVVSCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSIIPGL 77
           R+  DM   R      +   +ID  CR G    A   ++++         +SYN I+ GL
Sbjct: 322 RIAEDMPQGRSVAEEFAYGQMIDSLCRAGRHHGASRIVYIMRKRGLAPSSVSYNCIVHGL 381

Query: 78  SK--EGSCMRAYQLLVEGMEFGYSPSEHTYKV----------FAKANDNGTLVL------ 137
           SK   G CMRAYQLL EG EFGY P E TYK             KA D   LVL      
Sbjct: 382 SKRRRGGCMRAYQLLKEGAEFGYFPPEPTYKALVEGLCREKDLVKAKDVLELVLRRSDGD 441

Query: 138 -----------------------------VLQSNCQPDVITLHTVMKGFCKVETIGEALK 151
                                        +L+  C+PDVITL+T++ GFCK+  +GEA K
Sbjct: 442 ADRTRIYNIFLAALRMVDNPSEQLNVVVTMLRKQCRPDVITLNTLVHGFCKLGRVGEAKK 501

[Close]

BLAST of Carg09103 vs. TrEMBL
Match: tr|M8BWT5|M8BWT5_AEGTA (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_06295 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 64/190 (33.68%), Postives = 88/190 (46.32%), Query Frame = 0


Query: 26  ERQC--PNVVSCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSIIPGL---SKE 85
           +R+C  P+  + + +ID  CR G    A   ++++         LSYN I+ GL    K 
Sbjct: 81  QRRCFVPDEFAYAQMIDSLCRAGQHHGASRIVYIMGKRGLCPSTLSYNCIVHGLCTSQKP 140

Query: 86  GSCMRAYQLLVEGMEFGYSPSEHTYKVF----------AKAND----------------- 145
           G  +RAYQL++EG+  GY P E TYKV           AKA D                 
Sbjct: 141 GGRLRAYQLVMEGVRSGYRPREVTYKVLVEELCREKEVAKAKDVLELMLQPQCGHDKPDE 200

Query: 146 -----------------------NGTLVLVLQSNCQPDVITLHTVMKGFCKVETIGEALK 153
                                   G LV +LQ +C+PDVIT++TV+ GFCKV    EA K
Sbjct: 201 ETRTRLYNMFLGALRAVDNPSEQLGVLVSMLQGDCKPDVITMNTVIHGFCKVGRTQEARK 260

[Close]

BLAST of Carg09103 vs. TrEMBL
Match: tr|A0A1D5UYG5|A0A1D5UYG5_WHEAT (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 64/190 (33.68%), Postives = 88/190 (46.32%), Query Frame = 0


Query: 26  ERQC--PNVVSCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSIIPGL---SKE 85
           +R+C  P+  + + +ID  CR G    A   ++++         LSYN I+ GL    K 
Sbjct: 113 QRRCFVPDEFAYAQMIDSLCRAGQHHGASRIVYIMGKRGLCPSTLSYNCIVHGLCTSQKP 172

Query: 86  GSCMRAYQLLVEGMEFGYSPSEHTYKVF----------AKAND----------------- 145
           G  +RAYQL++EG+  GY P E TYKV           AKA D                 
Sbjct: 173 GGRLRAYQLVMEGVRSGYRPREVTYKVLVEELCREKEVAKAKDVLELMLQPQCGHDKPDE 232

Query: 146 -----------------------NGTLVLVLQSNCQPDVITLHTVMKGFCKVETIGEALK 153
                                   G LV +LQ +C+PDVIT++TV+ GFCKV    EA K
Sbjct: 233 ETRTRLYNMFLGALRAVDNPSEQLGVLVSMLQGDCKPDVITMNTVIHGFCKVGRTQEARK 292

[Close]

BLAST of Carg09103 vs. TrEMBL
Match: tr|A0A103Y2Q1|A0A103Y2Q1_CYNCS (Orn/Lys/Arg decarboxylase, C-terminal (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_020280 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 23   MKSERQCPNVVSCSTLIDGYCRVGNVSAAEEDLFLV--------LLSYNSIIPGLSKEGS 82
            M  E+   +  +   +ID  CR G    A   ++++        L+SYNSI+ G +K G 
Sbjct: 1464 MPQEKSVSDAFAYGQMIDSLCRYGRHHGASRIVYMMMKRRCSPSLVSYNSIVHGHAKNGG 1523

Query: 83   CMRAYQLLVEGMEFGYSPSEHTYKVFAKA-----NDNGTLVLVLQ-------SNCQPDVI 142
             +RAYQ L +G E GYSPSE TYKV  +      ND G    +           C PDV+
Sbjct: 1524 YLRAYQFLKQGFEIGYSPSETTYKVLIECLSLEENDLGKAKKLFDIMLNKEGIKCHPDVV 1583

Query: 143  TLHTVMKGFCKVETIGEALKV 144
            TL+TV+ GFCK+  + E +++
Sbjct: 1584 TLNTVINGFCKMGKVEEGIQI 1604

The following BLAST results are available for this feature:

BLAST of Carg09103 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019077833.1	2.2e-25	45.89	PREDICTED: pentatricopeptide repeat-containing protein At3g18020 isoform X3 [Vit...	[more]
XP_019423092.1	1.3e-20	40.36	PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Lupinus angust...	[more]
XP_009356045.1	2.2e-20	42.35	PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Pyrus x bretsc...	[more]
PIA24947.1	1.2e-18	44.03	hypothetical protein AQUCO_14200017v1 [Aquilegia coerulea]	[more]
OAY68736.1	6.5e-17	34.04	Pentatricopeptide repeat-containing protein [Ananas comosus]	[more]

BLAST of Carg09103 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05240.1	7.7e-04	30.38	mitochondrial editing factor 19	[more]

BLAST of Carg09103 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09103 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G5C2B1\|A0A2G5C2B1_AQUCA	7.8e-19	44.03	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_14200017v1 PE=4...	[more]
tr\|A0A199UVS7\|A0A199UVS7_ANACO	4.3e-17	34.04	Pentatricopeptide repeat-containing protein OS=Ananas comosus OX=4615 GN=ACMD2_0...	[more]
tr\|M8BWT5\|M8BWT5_AEGTA	1.4e-15	33.68	Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_06295 PE=4 SV=1	[more]
tr\|A0A1D5UYG5\|A0A1D5UYG5_WHEAT	1.4e-15	33.68	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1	[more]
tr\|A0A103Y2Q1\|A0A103Y2Q1_CYNCS	1.8e-15	35.46	Orn/Lys/Arg decarboxylase, C-terminal (Fragment) OS=Cynara cardunculus var. scol...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09103-RA	Carg09103-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 33..53 e-value: 4.3E-4 score: 18.3 coord: 123..157 e-value: 3.0E-4 score: 18.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 119..163 e-value: 2.6E-8 score: 33.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 61..89 e-value: 1.2 score: 9.4
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 29..53 e-value: 2.3E-8 score: 33.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 58..92 score: 8.057
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 120..155 score: 8.912
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 31..53 score: 6.248
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 11..57 e-value: 3.3E-7 score: 32.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 59..171 e-value: 6.1E-13 score: 50.5
None	No IPR available	PANTHER	PTHR24015:SF310	SUBFAMILY NOT NAMED	coord: 10..52
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 10..52
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 110..161
None	No IPR available	PANTHER	PTHR24015:SF310	SUBFAMILY NOT NAMED	coord: 110..161
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 60..100
None	No IPR available	PANTHER	PTHR24015:SF310	SUBFAMILY NOT NAMED	coord: 60..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09103	CmaCh11G003090	Cucurbita maxima (Rimu)	carcmaB0830
Carg09103	CmoCh11G003150	Cucurbita moschata (Rifu)	carcmoB0808
Carg09103	Cp4.1LG04g13690	Cucurbita pepo (Zucchini)	carcpeB0847
Carg09103	Cla97C06G123820	Watermelon (97103) v2	carwmbB0623
Carg09103	Bhi02G000097	Wax gourd	carwgoB0710

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09103	Carg15176	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09103	Silver-seed gourd	carcarB416
Carg09103	Cucumber (Gy14) v2	carcgybB0594
Carg09103	Cucumber (Gy14) v2	carcgybB0595
Carg09103	Cucumber (Gy14) v1	carcgyB0668
Carg09103	Cucumber (Gy14) v1	carcgyB0670
Carg09103	Cucurbita maxima (Rimu)	carcmaB0828
Carg09103	Cucurbita maxima (Rimu)	carcmaB0832
Carg09103	Cucurbita maxima (Rimu)	carcmaB0834
Carg09103	Cucurbita moschata (Rifu)	carcmoB0806
Carg09103	Cucurbita moschata (Rifu)	carcmoB0810
Carg09103	Cucurbita moschata (Rifu)	carcmoB0812
Carg09103	Cucurbita pepo (Zucchini)	carcpeB0840
Carg09103	Cucurbita pepo (Zucchini)	carcpeB0843
Carg09103	Cucurbita pepo (Zucchini)	carcpeB0846
Carg09103	Wild cucumber (PI 183967)	carcpiB0628
Carg09103	Wild cucumber (PI 183967)	carcpiB0629
Carg09103	Cucumber (Chinese Long) v2	carcuB0622
Carg09103	Cucumber (Chinese Long) v2	carcuB0623
Carg09103	Cucumber (Chinese Long) v3	carcucB0629
Carg09103	Cucumber (Chinese Long) v3	carcucB0630
Carg09103	Bottle gourd (USVL1VR-Ls)	carlsiB538
Carg09103	Bottle gourd (USVL1VR-Ls)	carlsiB540
Carg09103	Melon (DHL92) v3.5.1	carmeB0598
Carg09103	Melon (DHL92) v3.5.1	carmeB0599
Carg09103	Melon (DHL92) v3.6.1	carmedB0605
Carg09103	Melon (DHL92) v3.6.1	carmedB0606
Carg09103	Watermelon (Charleston Gray)	carwcgB0579
Carg09103	Watermelon (Charleston Gray)	carwcgB0581
Carg09103	Watermelon (97103) v1	carwmB0592
Carg09103	Watermelon (97103) v1	carwmB0594
Carg09103	Watermelon (97103) v2	carwmbB0621
Carg09103	Wax gourd	carwgoB0705