Carg09082 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09082
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mitochondrial import receptor subunit TOM7-1-like
Location	Cucurbita_argyrosperma_scaffold_063 : 466432 .. 466653 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAATGTTTCTCTTAAAAGCAAGGGCAAGAGCACAAAGGGCTCTTCCAAGTCATCTGAGGGGAAATCCGCAACCCAAGCCTTCAAGGAATGGACCACTTGGGCCGTGAAGAAAGCCAAGGTCATCACCCACTATGGCTTCATTCCTCTGGTCATCATCATCGGCATGAACTCTGAGCCAAAGCCTCAGCTCTCCCAACTTCTCAGCCCCGTCTGA

mRNA sequence

ATGGCGTCGAATGTTTCTCTTAAAAGCAAGGGCAAGAGCACAAAGGGCTCTTCCAAGTCATCTGAGGGGAAATCCGCAACCCAAGCCTTCAAGGAATGGACCACTTGGGCCGTGAAGAAAGCCAAGGTCATCACCCACTATGGCTTCATTCCTCTGGTCATCATCATCGGCATGAACTCTGAGCCAAAGCCTCAGCTCTCCCAACTTCTCAGCCCCGTCTGA

Coding sequence (CDS)

ATGGCGTCGAATGTTTCTCTTAAAAGCAAGGGCAAGAGCACAAAGGGCTCTTCCAAGTCATCTGAGGGGAAATCCGCAACCCAAGCCTTCAAGGAATGGACCACTTGGGCCGTGAAGAAAGCCAAGGTCATCACCCACTATGGCTTCATTCCTCTGGTCATCATCATCGGCATGAACTCTGAGCCAAAGCCTCAGCTCTCCCAACTTCTCAGCCCCGTCTGA

Protein sequence

MASNVSLKSKGKSTKGSSKSSEGKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNSEPKPQLSQLLSPV

Homology

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BLAST of Carg09082 vs. NCBI nr
Match: XP_022930857.1 (mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_023529840.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.0 bits (297), Expect = 6.7e-24
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS
Sbjct: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

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BLAST of Carg09082 vs. NCBI nr
Match: XP_022973450.1 (mitochondrial import receptor subunit TOM7-1-like [Cucurbita maxima])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MASNVSLKSKGKS XXXXXXXXXXXX QAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS
Sbjct: 1  MASNVSLKSKGKSXXXXXXXXXXXXXXQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. NCBI nr
Match: XP_022921829.1 (mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_022988536.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita maxima] >XP_023516449.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS VSL+SKGKS+    XXX     TQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKGSSXXXEDKSTTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. NCBI nr
Match: XP_022134881.1 (mitochondrial import receptor subunit TOM7-1-like [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-21
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS VS KSKGKS XXXXXXXXXXXXTQAFKEW+TWAVKKAKVITHYGFIPLVIIIGMNS
Sbjct: 1  MASKVSFKSKGKSXXXXXXXXXXXXXTQAFKEWSTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKP LSQLLSPV
Sbjct: 61 EPKPHLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. NCBI nr
Match: XP_008341149.1 (PREDICTED: mitochondrial import receptor subunit TOM7-2-like [Malus domestica] >XP_018497783.1 PREDICTED: mitochondrial import receptor subunit TOM7-2-like [Pyrus x bretschneideri])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-20
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS +SLKSKGK+              Q+FKEW+TWA+KKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASRISLKSKGKTPAKPSKGSEERSVAQSFKEWSTWALKKAKVVTHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. TAIR10
Match: AT5G41685.1 (Mitochondrial outer membrane translocase complex, subunit Tom7)

HSP 1 Score: 80.1 bits (196), Expect = 6.2e-16
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 1  MASNVSL---KSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 60
          M S +SL   K KGK +                KEWT W++KKAKV+THYGFIPLVI +G
Sbjct: 1  MESTISLKVNKGKGKGSKGASSSDDKSKF-DVVKEWTNWSLKKAKVVTHYGFIPLVIFVG 60

Query: 61 MNSEPKPQLSQLLSPV 74
          MNS+PKP L QLLSPV
Sbjct: 61 MNSDPKPHLFQLLSPV 75

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BLAST of Carg09082 vs. TAIR10
Match: AT1G64220.1 (translocase of outer membrane 7 kDa subunit 2)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-10
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38 VKKAKVITHYGFIPLVIIIGMNSEPKPQLSQLLSPV 74
          ++KAKV THYGFIPL+IIIGMNS+PKP L  LLSPV
Sbjct: 42 LQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77

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BLAST of Carg09082 vs. Swiss-Prot
Match: sp|O82067|TOM7A_SOLTU (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 7.8e-16
Identity = 45/71 (63.38%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 7  LKSKGKSTXXXXXXXXXXXXT----QAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNSEP 66
          LK KGK+T                 +  KEW TW  KKAKVITHYGFIPLVIIIGMNSEP
Sbjct: 2  LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEP 61

Query: 67 KPQLSQLLSPV 74
          KP LSQLLSPV
Sbjct: 62 KPSLSQLLSPV 72

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BLAST of Carg09082 vs. Swiss-Prot
Match: sp|Q9ASY8|TOM71_ARATH (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana OX=3702 GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-14
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 1  MASNVSL---KSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 60
          M S +SL   K KGK +                KEWT W++KKAKV+THYGFIPLVI +G
Sbjct: 1  MESTISLKVNKGKGKGSKGASSSDDKSKF-DVVKEWTNWSLKKAKVVTHYGFIPLVIFVG 60

Query: 61 MNSEPKPQLSQLLSPV 74
          MNS+PKP L QLLSPV
Sbjct: 61 MNSDPKPHLFQLLSPV 75

[Close]

BLAST of Carg09082 vs. Swiss-Prot
Match: sp|Q3ECI7|TOM72_ARATH (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana OX=3702 GN=TOM7-2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-09
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38 VKKAKVITHYGFIPLVIIIGMNSEPKPQLSQLLSPV 74
          ++KAKV THYGFIPL+IIIGMNS+PKP L  LLSPV
Sbjct: 42 LQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77

[Close]

BLAST of Carg09082 vs. TrEMBL
Match: tr|M5XYQ7|M5XYQ7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G065700 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-20
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS V+LKSKGK+T             Q+ KEW+TWA+KKAKV+THYGFIPL+I+IGMNS
Sbjct: 1  MASKVTLKSKGKTTNKGSKGSDERSVAQSVKEWSTWAMKKAKVVTHYGFIPLIIVIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. TrEMBL
Match: tr|A0A1S3C1D2|A0A1S3C1D2_CUCME (mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo OX=3656 GN=LOC103495918 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-20
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS VSL+SKGK  XXXXXXXXXXXX   FKEWTTWAVKKAKVITHYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKXXXXXXXXXXXXXXXXXFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. TrEMBL
Match: tr|A0A2P6QS68|A0A2P6QS68_ROSCH (Putative mitochondrial import receptor subunit TOM7 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0397981 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-20
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS VSLKSKGK+T            +QA KEWT+W +KKAKV+THYGFIPL+I+IGMNS
Sbjct: 1  MASRVSLKSKGKTTNKGSKGSDDRSISQAVKEWTSWTMKKAKVVTHYGFIPLIIVIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          +PKPQLSQLLSPV
Sbjct: 61 DPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. TrEMBL
Match: tr|A0A0A0LN99|A0A0A0LN99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G424720 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.3e-19
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MASNVSLKSKGKSTXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60
          MAS VSL+SKGK  XXXXXXXXXXXX    KEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKXXXXXXXXXXXXXXXXXXKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of Carg09082 vs. TrEMBL
Match: tr|A0A2C9USB3|A0A2C9USB3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G122700 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-19
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1  MASNVSLKSKGK-STXXXXXXXXXXXXTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMN 60
          MAS VSLKSKGK S+            TQ  KEW+TWA+KKAKV+THYGFIPLVIIIGMN
Sbjct: 1  MASRVSLKSKGKSSSGKGSKGMEEKSTTQCLKEWSTWAMKKAKVVTHYGFIPLVIIIGMN 60

Query: 61 SEPKPQLSQLLSPV 74
          SEPKPQL QLLSPV
Sbjct: 61 SEPKPQLYQLLSPV 74

The following BLAST results are available for this feature:

BLAST of Carg09082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930857.1	6.7e-24	100.00	mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_02352...	[more]
XP_022973450.1	1.6e-22	97.26	mitochondrial import receptor subunit TOM7-1-like [Cucurbita maxima]	[more]
XP_022921829.1	2.1e-22	83.56	mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_02298...	[more]
XP_022134881.1	5.3e-21	93.15	mitochondrial import receptor subunit TOM7-1-like [Momordica charantia]	[more]
XP_008341149.1	3.4e-20	71.23	PREDICTED: mitochondrial import receptor subunit TOM7-2-like [Malus domestica] >...	[more]

BLAST of Carg09082 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41685.1	6.2e-16	55.26	Mitochondrial outer membrane translocase complex, subunit Tom7	[more]
AT1G64220.1	2.3e-10	77.78	translocase of outer membrane 7 kDa subunit 2	[more]

BLAST of Carg09082 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82067\|TOM7A_SOLTU	7.8e-16	63.38	Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM...	[more]
sp\|Q9ASY8\|TOM71_ARATH	1.1e-14	55.26	Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q3ECI7\|TOM72_ARATH	4.1e-09	77.78	Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Carg09082 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M5XYQ7\|M5XYQ7_PRUPE	8.6e-20	68.49	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G065700 PE=4 SV=1	[more]
tr\|A0A1S3C1D2\|A0A1S3C1D2_CUCME	8.6e-20	90.41	mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2P6QS68\|A0A2P6QS68_ROSCH	8.6e-20	68.49	Putative mitochondrial import receptor subunit TOM7 OS=Rosa chinensis OX=74649 G...	[more]
tr\|A0A0A0LN99\|A0A0A0LN99_CUCSA	7.3e-19	87.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G424720 PE=4 SV=1	[more]
tr\|A0A2C9USB3\|A0A2C9USB3_MANES	9.5e-19	71.62	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G122700 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005742	mitochondrial outer membrane translocase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030150	protein import into mitochondrial matrix

Vocabulary: **INTERPRO**
Term	Definition
IPR012621	Tom7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09082-RA	Carg09082-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012621	Mitochondrial import receptor subunit TOM7	PFAM	PF08038	Tom7	coord: 31..70 e-value: 1.4E-17 score: 62.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR34944:SF2	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7-1-RELATED	coord: 1..73
None	No IPR available	PANTHER	PTHR34944	FAMILY NOT NAMED	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09082	Cla018895	Watermelon (97103) v1	carwmB0594
Carg09082	ClCG06G014040	Watermelon (Charleston Gray)	carwcgB0581
Carg09082	CmaCh10G003480	Cucurbita maxima (Rimu)	carcmaB0828
Carg09082	CmaCh11G003300	Cucurbita maxima (Rimu)	carcmaB0830
Carg09082	CmoCh10G003780	Cucurbita moschata (Rifu)	carcmoB0806
Carg09082	Cla97C06G123490	Watermelon (97103) v2	carwmbB0623
Carg09082	Bhi02G000132	Wax gourd	carwgoB0710

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09082	Carg15197	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09082	Cucumber (Gy14) v2	carcgybB0594
Carg09082	Cucumber (Gy14) v1	carcgyB0668
Carg09082	Cucurbita moschata (Rifu)	carcmoB0808
Carg09082	Cucurbita pepo (Zucchini)	carcpeB0843
Carg09082	Cucurbita pepo (Zucchini)	carcpeB0847
Carg09082	Wild cucumber (PI 183967)	carcpiB0628
Carg09082	Cucumber (Chinese Long) v2	carcuB0622
Carg09082	Cucumber (Chinese Long) v3	carcucB0629
Carg09082	Bottle gourd (USVL1VR-Ls)	carlsiB540
Carg09082	Melon (DHL92) v3.5.1	carmeB0599
Carg09082	Melon (DHL92) v3.6.1	carmedB0606