Carg09047 (gene) Silver-seed gourd

NameCarg09047
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_063 : 278390 .. 278985 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCATACCTCATCCACCAATGCAGTTGGGTCGGTAAACTCGGCCTTATTAACCAAGTCCAGCGTGTCGAAGTATCTGATATACTAATGTGCAACAGTACTGCTCTTAATTTACATGGTTCATCTGTGTGCGTGTGCAGGGTCATTAGATGGTTGTTGGAGATGCGAGACCGAGTAGAGTGGAAAGTGATGGTGACGAGAGGTCGATACCTTACAGATGGTTCTAGTTTGACTGCTGTGGAATTCACTTCCATTTGCTTAGTCCCGACTGCCCTGTCTATTTGAAGCCCACTTTACACTCCCTCCCTAAACTAGTGGTTGTTTATGTTTCGTTGTTTTTGGACTGATTACTTTAGGAGCTCCAAATTCACCAGCTTGTTATTTAAATGAAGTGAATTCTCAGGATCTTGTCGTCCCCTCCCAACTCTATCTATGCACAGACACAATAAGAACTCTTCCTTACGTATGTATAAAGTAACTGATAAAATGTTGTCCATTTCAAGTGCCAGAAGATTAATCTCAGTTCGTAGTTGCAATATCTTCCAGACTGCTTGAAACTTTTGTGCTATTTGTATACGAAATTCTCTTTATA

mRNA sequence

ATGAACCTCATACCTCATCCACCAATGCAGTTGGGTCGGGTCATTAGATGGTTGTTGGAGATGCGAGACCGAGTAGAGTGGAAAGTGATGGTGACGAGAGGTCGATACCTTACAGATGGTTCTAGTTTGACTGCTGTGGAATTCACTTCCATTTGCTTAGTCCCGACTGCCCTGTCTATTTGAAGCCCACTTTACACTCCCTCCCTAAACTAGTGGTTGTTTATGTTTCGTTGTTTTTGGACTGATTACTTTAGGAGCTCCAAATTCACCAGCTTGTTATTTAAATGAAGTGAATTCTCAGGATCTTGTCGTCCCCTCCCAACTCTATCTATGCACAGACACAATAAGAACTCTTCCTTACGTATGTATAAAGTAACTGATAAAATGTTGTCCATTTCAAGTGCCAGAAGATTAATCTCAGTTCGTAGTTGCAATATCTTCCAGACTGCTTGAAACTTTTGTGCTATTTGTATACGAAATTCTCTTTATA

Coding sequence (CDS)

ATGAACCTCATACCTCATCCACCAATGCAGTTGGGTCGGGTCATTAGATGGTTGTTGGAGATGCGAGACCGAGTAGAGTGGAAAGTGATGGTGACGAGAGGTCGATACCTTACAGATGGTTCTAGTTTGACTGCTGTGGAATTCACTTCCATTTGCTTAGTCCCGACTGCCCTGTCTATTTGA

Protein sequence

MNLIPHPPMQLGRVIRWLLEMRDRVEWKVMVTRGRYLTDGSSLTAVEFTSICLVPTALSI
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006605G2_nidogen/fibulin_G2F
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09047-RACarg09047-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006605G2 nidogen/fibulin G2FPROSITEPS50993NIDOGEN_G2coord: 1..60
score: 8.61

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg09047Wax gourdcarwgoB0711
Carg09047Silver-seed gourdcarcarB537
Carg09047Cucumber (Gy14) v2carcgybB0591
Carg09047Cucumber (Gy14) v2carcgybB0597
Carg09047Cucumber (Gy14) v1carcgyB0664
Carg09047Cucumber (Gy14) v1carcgyB0666
Carg09047Cucurbita maxima (Rimu)carcmaB0828
Carg09047Cucurbita maxima (Rimu)carcmaB0830
Carg09047Cucurbita maxima (Rimu)carcmaB0831
Carg09047Cucurbita maxima (Rimu)carcmaB0837
Carg09047Cucurbita moschata (Rifu)carcmoB0806
Carg09047Cucurbita moschata (Rifu)carcmoB0808
Carg09047Cucurbita moschata (Rifu)carcmoB0809
Carg09047Cucurbita moschata (Rifu)carcmoB0815
Carg09047Cucurbita pepo (Zucchini)carcpeB0842
Carg09047Cucurbita pepo (Zucchini)carcpeB0843
Carg09047Cucurbita pepo (Zucchini)carcpeB0847
Carg09047Cucurbita pepo (Zucchini)carcpeB0848
Carg09047Wild cucumber (PI 183967)carcpiB0625
Carg09047Wild cucumber (PI 183967)carcpiB0631
Carg09047Cucumber (Chinese Long) v2carcuB0619
Carg09047Cucumber (Chinese Long) v2carcuB0625
Carg09047Cucumber (Chinese Long) v3carcucB0626
Carg09047Cucumber (Chinese Long) v3carcucB0632
Carg09047Bottle gourd (USVL1VR-Ls)carlsiB537
Carg09047Bottle gourd (USVL1VR-Ls)carlsiB540
Carg09047Melon (DHL92) v3.5.1carmeB0599
Carg09047Melon (DHL92) v3.6.1carmedB0606
Carg09047Watermelon (Charleston Gray)carwcgB0578
Carg09047Watermelon (Charleston Gray)carwcgB0581
Carg09047Watermelon (97103) v1carwmB0593
Carg09047Watermelon (97103) v1carwmB0594
Carg09047Watermelon (97103) v2carwmbB0619
Carg09047Watermelon (97103) v2carwmbB0620
Carg09047Watermelon (97103) v2carwmbB0623