Carg08993 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08993
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H2A
Location	Cucurbita_argyrosperma_scaffold_020 : 1112145 .. 1113906 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTACCATTTTGCAGGTTCAAAAATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGGTGTTCTTTTGAATTCTTACTCTGCCTTTTTTTCCTCCAAAATTTGGAAGCAATTGAAACGTCGAAGCATGTTTAATTTTTCCTCATCTTCTGAACACCTATAAATTTCGAATCATTTTGATATTTTACTCGTTTAAGGACATTACAACGACTGAGATAAGGTTATGTTTATGTTGCTGTATTTTGCGATCTTTGTTCCTTGAAATTGTTTCTGTGATAGCATTTTTTGTTGATAGATAAGGATTTTAACATGGGGCTCTGAAATATTTTTCAGTTCTTGGTTTAGGGTATGTGTAAGCTAGTTTTTTATAGGTTGGGCTAACAATTCGCAATTCAAATCCCCATGTAGTTTTATTTTTAAGCTACATGTTGTTGAGATTTGTACAATTATGTTGATGTATCTGCCAATGTGGATCTGTGTTCCTTAAATTTGTACTACAATACAATTTTTTGTTGACAGCTTTGAATTTTAATACGGGTCTCTGAAAATTCTTCTAATTATCTGCTTTTGGAGGGATGTGCAAGCTAGTTTTTGTGGGTTGGGCTGAAAATTCGCAATTCACTTTTTAATCTACCTGTAGTTAAGCTTAGTACAATTATGTTGTACCCTTTTTTATTGACAGCCTTGAACTTTAACATGGGACTCTGAAATCTATTTTAATTTTTTTTTTTTAGGTGAGAAAGTGCAAGCTAGATTTTTTTTTTCTTTTCTTTTTTTTGTAGGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTAGTTTTTGAGGAACATGTAGTTAAGATTAGTATAACTAACTATGTTGATGTATCTACACCTTGTGATCTATGTTCTTCGAACTTCGACTGTATTGCCATTTTTTGTTGACAGCTTTGAATTTAACTAGTGTTTTGCGGGTTGGGATAAAAGTTTAGAATTCAAATGCCCATGTACTATGAGTATTGTGATATTTTGTAGTTAACATGTGCTTTGAATTTAACTAGTGTTTTGTAGTTAACATGATTTCATTGACGTTGGTGTCTCTGAGTATTGTGATATTTGTTCGTTTAATTTTTATTCTAATAGCACATTTTGTTATCAGCTTTGAATTTTAACATGGGGCTCTGAAATGTAATCTTCTGTAAACTATTATTTGTTTTATGCCGAAAGTGTAAGCTAGTGTTTTGTGGGCTGGGCTGAAAATTTACAATTCAAATGCCCTTGTAGTGTTTTATTTGTAAGCTACATTTGGGTTGAGTTCAAATGATTTCACTTAATTTGGGGCCTTGAATCGCACCAGTGTTGGGTCACTTTAACTTATGTAATCTCCGGATTGTGGGGTTCTAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

mRNA sequence

ATGCTCTACCATTTTGCAGGTGAGAAAGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTATGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Coding sequence (CDS)

ATGCTCTACCATTTTGCAGGTGAGAAAGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTATGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Protein sequence

MLYHFAGEKVGLKNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD

Homology

[Close]

BLAST of Carg08993 vs. NCBI nr
Match: XP_004145372.1 (PREDICTED: histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 PREDICTED: histone H2A variant 1 [Cucumis sativus] >XP_008449356.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_008449358.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_011649183.1 PREDICTED: histone H2A variant 1 [Cucumis sativus] >XP_022930908.1 histone H2A variant 1 [Cucurbita moschata] >XP_022996250.1 histone H2A variant 1 [Cucurbita maxima] >XP_022967517.1 histone H2A variant 1 [Cucurbita maxima] >XP_023532530.1 histone H2A variant 1 [Cucurbita pepo subsp. pepo] >KGN61697.1 Histone H2A [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]

BLAST of Carg08993 vs. NCBI nr
Match: XP_022145883.1 (histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant 1 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]

BLAST of Carg08993 vs. NCBI nr
Match: XP_022963902.1 (histone H2A variant 1-like [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]

BLAST of Carg08993 vs. NCBI nr
Match: XP_023511677.1 (histone H2A variant 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]

BLAST of Carg08993 vs. NCBI nr
Match: XP_018838034.1 (PREDICTED: histone H2A variant 1-like [Juglans regia] >XP_018844565.1 PREDICTED: histone H2A variant 1-like [Juglans regia] >XP_023922835.1 histone H2A variant 1 [Quercus suber] >POE97517.1 histone h2a variant 1 [Quercus suber])

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 43  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 102

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SKD
Sbjct: 103 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD 138

[Close]

BLAST of Carg08993 vs. TAIR10
Match: AT3G54560.1 (histone H2A 11)

HSP 1 Score: 174.9 bits (442), Expect = 3.0e-44
Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LKTR+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK +K+
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]

BLAST of Carg08993 vs. TAIR10
Match: AT2G38810.1 (histone H2A 8)

HSP 1 Score: 173.7 bits (439), Expect = 6.6e-44
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +KD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]

BLAST of Carg08993 vs. TAIR10
Match: AT1G52740.1 (histone H2A protein 9)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-42
Identity = 85/100 (85.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 17  LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 76
           L+  +GR+HR LKTR +A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PR
Sbjct: 35  LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPR 94

Query: 77  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++K+
Sbjct: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134

[Close]

BLAST of Carg08993 vs. TAIR10
Match: AT4G13570.2 (histone H2A 4)

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-32
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 17  LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 76
           ++  + RIH+ LK R+SA+  VGAT  VY+ SILEYLT EVL+LA N SKDLKVKRITPR
Sbjct: 35  IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94

Query: 77  HLQLAIRGDEELDTLIKGTIAGGGVIPHIH 107
           HLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 95  HLQLAIRGDEELDTLIKGTIIGGSVIPHIH 124

[Close]

BLAST of Carg08993 vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-22
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 17  LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 76
           L+  +GRI R LK+   A  RVGA A VYL+++LEYL AEVLELAGNA++D K  RI PR
Sbjct: 31  LQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 90

Query: 77  HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 111
           H+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct: 91  HIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

[Close]

BLAST of Carg08993 vs. Swiss-Prot
Match: sp|O23628|H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.3e-43
Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LKTR+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK +K+
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]

BLAST of Carg08993 vs. Swiss-Prot
Match: sp|Q9SII0|H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-42
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +KD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]

BLAST of Carg08993 vs. Swiss-Prot
Match: sp|Q84MP7|H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-42
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 7   GEKVGLKNSE---LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGN 66
           G+K  +  S    L+  +GRIHR LK R  ANGRVGATAAVY A+ILEYLTAEVLELAGN
Sbjct: 25  GKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGN 84

Query: 67  ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SK+
Sbjct: 85  ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137

[Close]

BLAST of Carg08993 vs. Swiss-Prot
Match: sp|Q8S857|H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-42
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SANGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 44  VGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQL 103

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK +K+
Sbjct: 104 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139

[Close]

BLAST of Carg08993 vs. Swiss-Prot
Match: sp|Q8H7Y8|H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-42
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 17  LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 76
           L+  +GRIHR LK+R SA+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 39  LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 98

Query: 77  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SK+
Sbjct: 99  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138

[Close]

BLAST of Carg08993 vs. TrEMBL
Match: tr|A0A1S3BLU8|A0A1S3BLU8_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.6e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]

BLAST of Carg08993 vs. TrEMBL
Match: tr|A0A0A0LLQ9|A0A0A0LLQ9_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G225360 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.6e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]

BLAST of Carg08993 vs. TrEMBL
Match: tr|A0A2I4G293|A0A2I4G293_9ROSI (Histone H2A OS=Juglans regia OX=51240 GN=LOC109004080 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 43  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 102

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SKD
Sbjct: 103 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD 138

[Close]

BLAST of Carg08993 vs. TrEMBL
Match: tr|W9QXP9|W9QXP9_9ROSA (Histone H2A OS=Morus notabilis OX=981085 GN=L484_012548 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 43  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 102

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SKD
Sbjct: 103 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD 138

[Close]

BLAST of Carg08993 vs. TrEMBL
Match: tr|A0A2N9G6R6|A0A2N9G6R6_FAGSY (Histone H2A OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23037 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 43  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 102

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SKD
Sbjct: 103 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD 138

The following BLAST results are available for this feature:

BLAST of Carg08993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145372.1	5.4e-44	98.96	PREDICTED: histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 PREDICTED: hi...	[more]
XP_022145883.1	5.4e-44	98.96	histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant ...	[more]
XP_022963902.1	5.4e-44	98.96	histone H2A variant 1-like [Cucurbita moschata]	[more]
XP_023511677.1	5.4e-44	98.96	histone H2A variant 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_018838034.1	1.6e-43	97.92	PREDICTED: histone H2A variant 1-like [Juglans regia] >XP_018844565.1 PREDICTED:...	[more]

BLAST of Carg08993 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54560.1	3.0e-44	91.67	histone H2A 11	[more]
AT2G38810.1	6.6e-44	90.63	histone H2A 8	[more]
AT1G52740.1	1.6e-42	85.00	histone H2A protein 9	[more]
AT4G13570.2	1.5e-32	74.44	histone H2A 4	[more]
AT1G08880.1	4.1e-22	58.95	Histone superfamily protein	[more]

BLAST of Carg08993 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23628\|H2AV1_ARATH	5.3e-43	91.67	Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1	[more]
sp\|Q9SII0\|H2AV2_ARATH	1.2e-42	90.63	Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2...	[more]
sp\|Q84MP7\|H2AV3_ORYSJ	1.5e-42	80.53	Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]
sp\|Q8S857\|H2AV2_ORYSJ	2.0e-42	90.63	Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g...	[more]
sp\|Q8H7Y8\|H2AV1_ORYSJ	2.6e-42	88.00	Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]

BLAST of Carg08993 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLU8\|A0A1S3BLU8_CUCME	3.6e-44	98.96	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1	[more]
tr\|A0A0A0LLQ9\|A0A0A0LLQ9_CUCSA	3.6e-44	98.96	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G225360 PE=3 SV=1	[more]
tr\|A0A2I4G293\|A0A2I4G293_9ROSI	1.0e-43	97.92	Histone H2A OS=Juglans regia OX=51240 GN=LOC109004080 PE=3 SV=1	[more]
tr\|W9QXP9\|W9QXP9_9ROSA	1.0e-43	97.92	Histone H2A OS=Morus notabilis OX=981085 GN=L484_012548 PE=3 SV=1	[more]
tr\|A0A2N9G6R6\|A0A2N9G6R6_FAGSY	1.0e-43	97.92	Histone H2A OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23037 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007125	Histone_H2A/H2B/H3
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08993-RA	Carg08993-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 37..52 score: 69.94 coord: 66..80 score: 65.78 coord: 52..65 score: 84.63 coord: 7..29 score: 29.52 coord: 93..111 score: 51.98
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..116 e-value: 1.9E-52 score: 190.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 8..116 e-value: 3.4E-43 score: 148.6
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 15..93
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 86..115 e-value: 1.1E-10 score: 41.0
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..85 e-value: 6.2E-16 score: 58.9
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 17..115
None	No IPR available	PANTHER	PTHR23430:SF211	HISTONE H2A VARIANT 1	coord: 17..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08993	Cla006025	Watermelon (97103) v1	carwmB0778
Carg08993	Csa2G225360	Cucumber (Chinese Long) v2	carcuB0792
Carg08993	MELO3C014317	Melon (DHL92) v3.5.1	carmeB0776
Carg08993	ClCG07G000560	Watermelon (Charleston Gray)	carwcgB0760
Carg08993	CSPI02G11290	Wild cucumber (PI 183967)	carcpiB0811
Carg08993	Cucsa.016400	Cucumber (Gy14) v1	carcgyB0886
Carg08993	CmaCh19G000130	Cucurbita maxima (Rimu)	carcmaB1080
Carg08993	CmaCh02G017780	Cucurbita maxima (Rimu)	carcmaB1084
Carg08993	CmoCh19G000120	Cucurbita moschata (Rifu)	carcmoB1053
Carg08993	Lsi05G009690	Bottle gourd (USVL1VR-Ls)	carlsiB717
Carg08993	Cp4.1LG15g00120	Cucurbita pepo (Zucchini)	carcpeB1092
Carg08993	CsGy2G011320	Cucumber (Gy14) v2	carcgybB0769
Carg08993	MELO3C014317.2	Melon (DHL92) v3.6.1	carmedB0789
Carg08993	CsaV3_2G013770	Cucumber (Chinese Long) v3	carcucB0813
Carg08993	Cla97C07G128860	Watermelon (97103) v2	carwmbB0821
Carg08993	Bhi05G000204	Wax gourd	carwgoB0916

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08993	Carg16819	Silver-seed gourd	carcarB598

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08993	Wax gourd	carwgoB0914
Carg08993	Silver-seed gourd	carcarB264
Carg08993	Silver-seed gourd	carcarB273
Carg08993	Silver-seed gourd	carcarB599
Carg08993	Silver-seed gourd	carcarB610
Carg08993	Cucumber (Gy14) v2	carcgybB0772
Carg08993	Cucumber (Gy14) v1	carcgyB0888
Carg08993	Cucurbita maxima (Rimu)	carcmaB1075
Carg08993	Cucurbita maxima (Rimu)	carcmaB1089
Carg08993	Cucurbita moschata (Rifu)	carcmoB1049
Carg08993	Cucurbita moschata (Rifu)	carcmoB1057
Carg08993	Cucurbita moschata (Rifu)	carcmoB1052
Carg08993	Cucurbita moschata (Rifu)	carcmoB1058
Carg08993	Cucurbita pepo (Zucchini)	carcpeB1087
Carg08993	Cucurbita pepo (Zucchini)	carcpeB1096
Carg08993	Cucurbita pepo (Zucchini)	carcpeB1098
Carg08993	Cucurbita pepo (Zucchini)	carcpeB1099
Carg08993	Cucurbita pepo (Zucchini)	carcpeB1101
Carg08993	Wild cucumber (PI 183967)	carcpiB0815
Carg08993	Cucumber (Chinese Long) v2	carcuB0795
Carg08993	Cucumber (Chinese Long) v3	carcucB0818
Carg08993	Bottle gourd (USVL1VR-Ls)	carlsiB720
Carg08993	Melon (DHL92) v3.5.1	carmeB0775
Carg08993	Melon (DHL92) v3.5.1	carmeB0781
Carg08993	Melon (DHL92) v3.6.1	carmedB0788
Carg08993	Melon (DHL92) v3.6.1	carmedB0792
Carg08993	Watermelon (Charleston Gray)	carwcgB0758
Carg08993	Watermelon (97103) v1	carwmB0782
Carg08993	Watermelon (97103) v2	carwmbB0817
Carg08993	Watermelon (97103) v2	carwmbB0819