Carg08839 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08839
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_020 : 361053 .. 361370 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAGAGAAAGGCAAGGCAGATATAGAGCTCGAAAACGTCTAGAGGAAGAATTAAACAAGGTTTCGACCCTGAAACAAGCCACTCAGATGCAGTGCATAGCCTCTTGCAACAATTCTAATATGCCTGCAACAACATCAACCAGTGACACTCAAATGCAGTGCATAGCCTCCGATCTCGAACCACAATTAGAAACGCAATCACATTCGGAGTCGCCTTCTGAACAGGTCGCCTCCGACACAGTGAAAAAGGTACTCGGTCGAAGAAACTGGAAAGCAGATGCCAGAAGGAAGAATTGCAGGTCTGAGATGTAG

mRNA sequence

ATGAAGAACAGAGAAAGGCAAGGCAGATATAGAGCTCGAAAACGTCTAGAGGAAGAATTAAACAAGGTTTCGACCCTGAAACAAGCCACTCAGATGCAGTGCATAGCCTCTTGCAACAATTCTAATATGCCTGCAACAACATCAACCAGTGACACTCAAATGCAGTGCATAGCCTCCGATCTCGAACCACAATTAGAAACGCAATCACATTCGGAGTCGCCTTCTGAACAGGTCGCCTCCGACACAGTGAAAAAGGTACTCGGTCGAAGAAACTGGAAAGCAGATGCCAGAAGGAAGAATTGCAGGTCTGAGATGTAG

Coding sequence (CDS)

ATGAAGAACAGAGAAAGGCAAGGCAGATATAGAGCTCGAAAACGTCTAGAGGAAGAATTAAACAAGGTTTCGACCCTGAAACAAGCCACTCAGATGCAGTGCATAGCCTCTTGCAACAATTCTAATATGCCTGCAACAACATCAACCAGTGACACTCAAATGCAGTGCATAGCCTCCGATCTCGAACCACAATTAGAAACGCAATCACATTCGGAGTCGCCTTCTGAACAGGTCGCCTCCGACACAGTGAAAAAGGTACTCGGTCGAAGAAACTGGAAAGCAGATGCCAGAAGGAAGAATTGCAGGTCTGAGATGTAG

Protein sequence

MKNRERQGRYRARKRLEEELNKVSTLKQATQMQCIASCNNSNMPATTSTSDTQMQCIASDLEPQLETQSHSESPSEQVASDTVKKVLGRRNWKADARRKNCRSEM

Homology

[Close]

BLAST of Carg08839 vs. NCBI nr
Match: XP_023532956.1 (uncharacterized protein LOC111794968 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQATQMQCIASCNNSNMPATTXXXXXXXXXXXXX 60
           MKNRERQ RYRARKRLEEELNK STLKQATQMQCI SCN+SNMPAT XXXXXXXXXXXX 
Sbjct: 5   MKNRERQRRYRARKRLEEELNKASTLKQATQMQCIDSCNSSNMPATXXXXXXXXXXXXXD 64

Query: 61  LEPQXETQSHSESPSEQVASDTVKKVLGRRNWKADARRKNCRSEM 106
           LEPQ ETQSHSESPSEQV SDT KKVLGRRNWKADAR+KNCRSEM
Sbjct: 65  LEPQLETQSHSESPSEQVVSDTAKKVLGRRNWKADARKKNCRSEM 109

[Close]

BLAST of Carg08839 vs. NCBI nr
Match: XP_022155993.1 (uncharacterized protein LOC111022965 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 63/133 (47.37%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQATQ-----------------MQCI-------- 60
           +KNRERQ RYRARKRLEEE+ K ST+KQ TQ                 + C         
Sbjct: 46  LKNRERQRRYRARKRLEEEIKKASTVKQPTQTGTYFQPNGIANNPLTRVHCTRNWKKDAR 105

Query: 61  ---------ASCNNSNMPATTXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKKV 100
                    ASCN+SNM A T              EPQ ETQSH E P+EQ+ S T KKV
Sbjct: 106 SVHVSRGLEASCNSSNMAARTSTSESQMQCLPSNPEPQLETQSHLEPPAEQLISQTAKKV 165

[Close]

BLAST of Carg08839 vs. NCBI nr
Match: XP_022963572.1 (uncharacterized protein LOC111463869 [Cucurbita moschata] >XP_022963573.1 uncharacterized protein LOC111463869 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 9.6e-16
Identity = 61/134 (45.52%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQATQ-----------------MQCI-------- 60
           +KNRERQ RYRARKRLEEE+ K ST+K  TQ                 + C         
Sbjct: 38  LKNRERQRRYRARKRLEEEIKKASTIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEAR 97

Query: 61  ----------ASCNNSNMPATTXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKK 100
                     ASCN+SNM A +              EPQ ET+SHSE P+EQ+ S+T KK
Sbjct: 98  NASVSRGLEEASCNSSNMAAKSSTSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKK 157

[Close]

BLAST of Carg08839 vs. NCBI nr
Match: XP_022967395.1 (uncharacterized protein LOC111466937 [Cucurbita maxima] >XP_022967396.1 uncharacterized protein LOC111466937 [Cucurbita maxima])

HSP 1 Score: 92.4 bits (228), Expect = 9.6e-16
Identity = 61/134 (45.52%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQATQ-----------------MQCI-------- 60
           +KNRERQ RYRARKRLEEE+ K ST+K  TQ                 + C         
Sbjct: 38  LKNRERQRRYRARKRLEEEIKKASTIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEAR 97

Query: 61  ----------ASCNNSNMPATTXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKK 100
                     ASCN+SNM A +              EPQ ET+SHSE P+EQ+ S+T KK
Sbjct: 98  NASVSRGLEEASCNSSNMAAKSSTSEGQIQCQPSNPEPQSETRSHSEPPTEQLVSETAKK 157

[Close]

BLAST of Carg08839 vs. NCBI nr
Match: KGN60386.1 (hypothetical protein Csa_3G902290 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 58/134 (43.28%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQ-----------------ATQMQCI-------- 60
           +KNRERQ RYRARKRLEEE+ K ST KQ                  T++ C         
Sbjct: 27  LKNRERQRRYRARKRLEEEIKKASTAKQPIQTGTYFQPNGIANNPLTRVHCSRNWKKEAR 86

Query: 61  ----------ASCNNSNMPATTXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKK 100
                      SCN+SNM A T             ++PQ ET SHS++P+EQ+ S+T KK
Sbjct: 87  SANISRGVEEGSCNSSNMAAKTSTSESQLQCVPSNVDPQLETPSHSKTPAEQLVSETAKK 146

[Close]

BLAST of Carg08839 vs. TrEMBL
Match: tr|A0A0A0LK46|A0A0A0LK46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902290 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-15
Identity = 58/134 (43.28%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQ-----------------ATQMQCI-------- 60
           +KNRERQ RYRARKRLEEE+ K ST KQ                  T++ C         
Sbjct: 27  LKNRERQRRYRARKRLEEEIKKASTAKQPIQTGTYFQPNGIANNPLTRVHCSRNWKKEAR 86

Query: 61  ----------ASCNNSNMPATTXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKK 100
                      SCN+SNM A T             ++PQ ET SHS++P+EQ+ S+T KK
Sbjct: 87  SANISRGVEEGSCNSSNMAAKTSTSESQLQCVPSNVDPQLETPSHSKTPAEQLVSETAKK 146

[Close]

BLAST of Carg08839 vs. TrEMBL
Match: tr|A0A1S3CQ53|A0A1S3CQ53_CUCME (uncharacterized protein LOC103503545 OS=Cucumis melo OX=3656 GN=LOC103503545 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 57/134 (42.54%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQ-----------------ATQMQCI-------- 60
           +KNRERQ RYRARKRLEEE+ K S  KQ                  T++ C         
Sbjct: 27  LKNRERQRRYRARKRLEEEIKKASIAKQPIQTGTYFQPNGIANNPLTRVHCSRNWKKEAR 86

Query: 61  ----------ASCNNSNMPATTXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKK 100
                     ASCN+SNM A T             ++PQ ET SHS++P++Q+ S+T KK
Sbjct: 87  SANISRGVEEASCNSSNMAARTSTSESQLQCVPSNVDPQLETPSHSKTPADQLVSETAKK 146

[Close]

BLAST of Carg08839 vs. TrEMBL
Match: tr|A0A2P4H2W0|A0A2P4H2W0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_27988 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 1   MKNRERQGRYRARKRLEEELNKVSTLKQATQMQ-----------CI--ASCNN------- 60
           +KNRERQ RYRARKRLEEE+ K S + Q+T  Q           C+    C         
Sbjct: 39  LKNRERQRRYRARKRLEEEIKKSSVINQSTPPQVDLQQNVIHGPCMTRVHCKRDWKKDAR 98

Query: 61  -----------SNMPAT-TXXXXXXXXXXXXXLEPQXETQSHSESPSEQVASDTVKKVLG 102
                      SN+  T T              EP  + + HSE      +S+T + ++G
Sbjct: 99  KAHTSKDQDVISNVAVTLTSESQTPCSTYGIKAEPSLKRECHSEISHSLASSETHRTIVG 158

The following BLAST results are available for this feature:

BLAST of Carg08839 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532956.1	2.1e-34	90.48	uncharacterized protein LOC111794968 [Cucurbita pepo subsp. pepo]	[more]
XP_022155993.1	2.5e-16	47.37	uncharacterized protein LOC111022965 [Momordica charantia]	[more]
XP_022963572.1	9.6e-16	45.52	uncharacterized protein LOC111463869 [Cucurbita moschata] >XP_022963573.1 unchar...	[more]
XP_022967395.1	9.6e-16	45.52	uncharacterized protein LOC111466937 [Cucurbita maxima] >XP_022967396.1 uncharac...	[more]
KGN60386.1	1.1e-14	43.28	hypothetical protein Csa_3G902290 [Cucumis sativus]	[more]

BLAST of Carg08839 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg08839 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08839 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LK46\|A0A0A0LK46_CUCSA	7.0e-15	43.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902290 PE=4 SV=1	[more]
tr\|A0A1S3CQ53\|A0A1S3CQ53_CUCME	2.7e-14	42.54	uncharacterized protein LOC103503545 OS=Cucumis melo OX=3656 GN=LOC103503545 PE=...	[more]
tr\|A0A2P4H2W0\|A0A2P4H2W0_QUESU	1.7e-05	34.59	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_27988 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08839-RA	Carg08839-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08839	Cla016197	Watermelon (97103) v1	carwmB0776
Carg08839	Csa3G902290	Cucumber (Chinese Long) v2	carcuB0797
Carg08839	MELO3C003410	Melon (DHL92) v3.5.1	carmeB0771
Carg08839	CSPI03G46710	Wild cucumber (PI 183967)	carcpiB0817
Carg08839	Cucsa.313110	Cucumber (Gy14) v1	carcgyB0890
Carg08839	CmaCh02G016130	Cucurbita maxima (Rimu)	carcmaB1084
Carg08839	CmaCh19G002380	Cucurbita maxima (Rimu)	carcmaB1082
Carg08839	CmoCh19G002530	Cucurbita moschata (Rifu)	carcmoB1055
Carg08839	LsiUNG000410	Bottle gourd (USVL1VR-Ls)	carlsiB712
Carg08839	Cp4.1LG05g00040	Cucurbita pepo (Zucchini)	carcpeB1099
Carg08839	Cp4.1LG15g02180	Cucurbita pepo (Zucchini)	carcpeB1094
Carg08839	MELO3C003410.2	Melon (DHL92) v3.6.1	carmedB0784
Carg08839	CsaV3_3G049170	Cucumber (Chinese Long) v3	carcucB0820
Carg08839	Cla97C09G174750	Watermelon (97103) v2	carwmbB0823
Carg08839	Bhi05G000339	Wax gourd	carwgoB0918

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08839	Carg24520	Silver-seed gourd	carcarB612

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08839	Silver-seed gourd	carcarB485
Carg08839	Silver-seed gourd	carcarB611
Carg08839	Cucumber (Gy14) v2	carcgybB0774
Carg08839	Cucumber (Gy14) v2	carcgybB0775
Carg08839	Cucumber (Gy14) v1	carcgyB0891
Carg08839	Cucurbita maxima (Rimu)	carcmaB1077
Carg08839	Cucurbita maxima (Rimu)	carcmaB1088
Carg08839	Cucurbita moschata (Rifu)	carcmoB1057
Carg08839	Cucurbita moschata (Rifu)	carcmoB1050
Carg08839	Cucurbita moschata (Rifu)	carcmoB1060
Carg08839	Cucurbita pepo (Zucchini)	carcpeB1089
Carg08839	Cucurbita pepo (Zucchini)	carcpeB1091
Carg08839	Cucurbita pepo (Zucchini)	carcpeB1100
Carg08839	Wild cucumber (PI 183967)	carcpiB0818
Carg08839	Cucumber (Chinese Long) v2	carcuB0798
Carg08839	Bottle gourd (USVL1VR-Ls)	carlsiB716
Carg08839	Cucumber (Chinese Long) v3	carcucB0821
Carg08839	Bottle gourd (USVL1VR-Ls)	carlsiB721
Carg08839	Melon (DHL92) v3.5.1	carmeB0779
Carg08839	Melon (DHL92) v3.6.1	carmedB0793
Carg08839	Watermelon (Charleston Gray)	carwcgB0753
Carg08839	Watermelon (Charleston Gray)	carwcgB0754
Carg08839	Watermelon (97103) v1	carwmB0777
Carg08839	Watermelon (97103) v2	carwmbB0816
Carg08839	Wax gourd	carwgoB0909