Carg08710 (gene) Silver-seed gourd

Overview
NameCarg08710
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAaa-atpase
LocationCucurbita_argyrosperma_scaffold_057 : 605990 .. 607053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTCTTACAAACAGTCGATCGTCGTTGTCGAAGAACTTGATGTGCTTACCGCCAACCAGATGTTTGACTCTGCAAATGTTTACTTGGGCGCAAAGCTTACTTCATCCTTGCGAGGACTTAAGGTCCACAAGCTAGAAAAAGAGCAGCGATTGGCCTTGATCATAGATAGGAATCAAGAACTGGTTGACAAATTCGAAGGCGTCAATTTTAAGTGGGTTTTGGTTTCTGCGCGAAGAACCACGATGGTAATGCGCATGAGCGGACAGATGTTAGGCAGTTCGAGCTAAGCTTTCACAAGAAACACAAGGATATGGCATTAAGATTCTACCTTCCGCATCTTCCGCGAGAAGCAAATGCCATTAGAGATGAAAAAAAAAAAAGGCCGTGAAGCTCCATACAACAGATTATAGTGGCACTGATTACTGGGTCCAATCGACCTCAATCACCCAGCGACATTTGACACAACAGCCATGAACCCTGAAACTAAGAAGGCATTGATCGAAGATCGCAATAAGTTCAATGAGAGGGAAGAGTCCTACAGAAGAGTAAGAAAGGCTTGGAAACGTGGTTATTTGTTGTATGGACCACCAAGCACAGGGAAATCATCTGAAGCTTAAGATTTATGATATGGATCTGAGGGAAGTCCAATACAATTCAGATTTAAGCAGATTATTGATTGGCACAGAGAGCCGTTCAATATTAATAATTGAGGACATTGATTGTTCTGTTGAGCTTCAAGATAGGAGTTCAGACTCAGAAAATCAAACCAAATCTGCAGATGATGAAAAGGTAGGTCCCTGACCTGAAGGAAACTAAATATTTTGTATCCAAAGCTACATGACATAAGGAAGCTACTTATCAAATTGTTTGTTGCAATAAGATTACTCAGTATGGGTTATTGAACTTCATTGATGGCCTATGGTCGAGCTGTGGAGACGAGCGGATAGTGGTATCGACCATGAACCACCTGGACCGGTTGGATCCCGCGTTGTTGAGACGCGAGCACATGGATCTGCACCTACATATGTCTTACTGCAACTTCAGTGGTTTCAGATACTAA

mRNA sequence

ATGCGCTCTTACAAACAGTCGATCGTCGTTGTCGAAGAACTTGATGTGCTTACCGCCAACCAGATGTTTGACTCTGCAAATGTTTACTTGGGCGCAAAGCTTACTTCATCCTTGCGAGGACTTAAGGTCCACAAGCTAGAAAAAGAGCAGCGATTGGCCTTGATCATAGATAGGAATCAAGAACTGGTTGACAAATTCGAAGGCGTCAATTTTAAGTGGGTTTTGGTTTCTGCGCGAAGAACCACGATGGGAAATCATCTGAAGCTTAAGATTTATGATATGGATCTGAGGGAAGTCCAATACAATTCAGATTTAAGCAGATTATTGATTGGCACAGAGAGCCGTTCAATATTAATAATTGAGGACATTGATTGTTCTGTTGAGCTTCAAGATAGGAGTTCAGACTCAGAAAATCAAACCAAATCTGCAGATGATGAAAAGATTACTCAGTATGGGTTATTGAACTTCATTGATGGCCTATGGTCGAGCTGTGGAGACGAGCGGATAGTGGTATCGACCATGAACCACCTGGACCGGTTGGATCCCGCGTTGTTGAGACGCGAGCACATGGATCTGCACCTACATATGTCTTACTGCAACTTCAGTGGTTTCAGATACTAA

Coding sequence (CDS)

ATGCGCTCTTACAAACAGTCGATCGTCGTTGTCGAAGAACTTGATGTGCTTACCGCCAACCAGATGTTTGACTCTGCAAATGTTTACTTGGGCGCAAAGCTTACTTCATCCTTGCGAGGACTTAAGGTCCACAAGCTAGAAAAAGAGCAGCGATTGGCCTTGATCATAGATAGGAATCAAGAACTGGTTGACAAATTCGAAGGCGTCAATTTTAAGTGGGTTTTGGTTTCTGCGCGAAGAACCACGATGGGAAATCATCTGAAGCTTAAGATTTATGATATGGATCTGAGGGAAGTCCAATACAATTCAGATTTAAGCAGATTATTGATTGGCACAGAGAGCCGTTCAATATTAATAATTGAGGACATTGATTGTTCTGTTGAGCTTCAAGATAGGAGTTCAGACTCAGAAAATCAAACCAAATCTGCAGATGATGAAAAGATTACTCAGTATGGGTTATTGAACTTCATTGATGGCCTATGGTCGAGCTGTGGAGACGAGCGGATAGTGGTATCGACCATGAACCACCTGGACCGGTTGGATCCCGCGTTGTTGAGACGCGAGCACATGGATCTGCACCTACATATGTCTTACTGCAACTTCAGTGGTTTCAGATACTAA

Protein sequence

MRSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDKFEGVNFKWVLVSARRTTMGNHLKLKIYDMDLREVQYNSDLSRLLIGTESRSILIIEDIDCSVELQDRSSDSENQTKSADDEKITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLHLHMSYCNFSGFRY
Homology
[Close]
BLAST of Carg08710 vs. NCBI nr
Match: KGN59989.1 (hypothetical protein Csa_3G860250 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 122/336 (36.31%), Postives = 140/336 (41.67%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q I+V+EELD LT NQMFD+ANVYLG K++SS R +KVHK +KE+ LA+ IDRNQE
Sbjct: 54  RFSSQLIIVIEELDGLTVNQMFDAANVYLGTKVSSSTRRIKVHKPQKEKELAVTIDRNQE 113

Query: 62  LVDKFEGVNFKWVLVSAR------------------------------------------ 121
           L+D F+GVNFKWVLVS+R                                          
Sbjct: 114 LIDIFQGVNFKWVLVSSRIERPISSKNRNANVHEHSDVRHFELSFHKKHREMALRFYLPH 173

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 174 ILREANTIGDEKKAMKLHTIDYNGTHYWGSIDLNHPATFDTIAMNPETKKALIDDLNTFI 233

Query: 182 ------------------------------RTTMGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            M N+LK  IYDMDL+EVQYNSDL RLL
Sbjct: 234 ERKEYYRRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMDLKEVQYNSDLRRLL 293

[Close]
BLAST of Carg08710 vs. NCBI nr
Match: XP_004147876.2 (PREDICTED: probable mitochondrial chaperone BCS1-A [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 122/336 (36.31%), Postives = 140/336 (41.67%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q I+V+EELD LT NQMFD+ANVYLG K++SS R +KVHK +KE+ LA+ IDRNQE
Sbjct: 72  RFSSQLIIVIEELDGLTVNQMFDAANVYLGTKVSSSTRRIKVHKPQKEKELAVTIDRNQE 131

Query: 62  LVDKFEGVNFKWVLVSAR------------------------------------------ 121
           L+D F+GVNFKWVLVS+R                                          
Sbjct: 132 LIDIFQGVNFKWVLVSSRIERPISSKNRNANVHEHSDVRHFELSFHKKHREMALRFYLPH 191

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 192 ILREANTIGDEKKAMKLHTIDYNGTHYWGSIDLNHPATFDTIAMNPETKKALIDDLNTFI 251

Query: 182 ------------------------------RTTMGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            M N+LK  IYDMDL+EVQYNSDL RLL
Sbjct: 252 ERKEYYRRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMDLKEVQYNSDLRRLL 311

[Close]
BLAST of Carg08710 vs. NCBI nr
Match: XP_022142231.1 (AAA-ATPase At3g50940-like [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 7.6e-41
Identity = 125/336 (37.20%), Postives = 140/336 (41.67%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q I+VVEELD LTANQMFD+ NVYLG +L+SS R +KV K EKEQ+L + IDRNQE
Sbjct: 55  RLSSQMIIVVEELDGLTANQMFDAVNVYLGTRLSSSSRRIKVLKPEKEQQLDVTIDRNQE 114

Query: 62  LVDKFEGVNFKWVLVSAR----------------RT------------------------ 121
           L+D FEGV FKWVLVS+R                RT                        
Sbjct: 115 LIDTFEGVKFKWVLVSSRVEKPISNKNRDASAFSRTDVRQFEVSFHNKHRDMALKFYLPH 174

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 175 ILREAKAIRDERKAVKLHTIDYSGTDYWGSIDLNHPATFDTIAMNPETKEALIDDLNKFI 234

Query: 182 --------------------------------TMGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            M N+LK  IYDMDLREVQ NSDL RLL
Sbjct: 235 ERKQYYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDMDLREVQCNSDLRRLL 294

[Close]
BLAST of Carg08710 vs. NCBI nr
Match: XP_008466531.1 (PREDICTED: AAA-ATPase At3g50940-like [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 122/336 (36.31%), Postives = 141/336 (41.96%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q I+V+EELD LT NQMFD+ANVYLG KL+SS R +KVHK +KE+ LA+ IDRNQE
Sbjct: 55  RFSSQLIIVIEELDGLTVNQMFDAANVYLGTKLSSSSRRIKVHKPQKEKELAVTIDRNQE 114

Query: 62  LVDKFEGVNFKWVLVSAR--RTT------------------------------------- 121
           ++D F+GVNFKWVLVS+R  R T                                     
Sbjct: 115 IIDIFQGVNFKWVLVSSRIERPTSSKNRDANAHERSDVRHFELSFHQKHREMALRFYLPH 174

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 175 ILREANAIGDEKKAVKLHTIDYSGTDYWGSIDLNHPATFDTIAMNPETKKALIDDLNTFI 234

Query: 182 ---------------------------------MGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            + N+LK  IYDMDLREVQ NSDL RLL
Sbjct: 235 ERKEYYKRVGRAWKRGYLLYGPPGTGKSSLVAAVANYLKFDIYDMDLREVQCNSDLRRLL 294

[Close]
BLAST of Carg08710 vs. NCBI nr
Match: XP_022762875.1 (AAA-ATPase At3g50940-like [Durio zibethinus])

HSP 1 Score: 154.1 bits (388), Expect = 5.3e-34
Identity = 112/333 (33.63%), Postives = 131/333 (39.34%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q  VV+EE D LTANQ+F +ANVYLG KL+SS R +KV+K EKE+RL +I D+NQELVD 
Sbjct: 51  QLTVVIEESDGLTANQIFQAANVYLGEKLSSSTRRVKVNKHEKEKRLQVITDKNQELVDV 110

Query: 66  FEGVNFKWVLVSARR--------------------------------------------- 125
           F GV  KWVL+S+ R                                             
Sbjct: 111 FRGVKLKWVLLSSSRNRKFVSNKKNNTNGMLREEIWYFELSFHKKSREMVLSSYLPYILQ 170

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 171 KAKEIKEEKKTLKLHTVDYNGTDYWGSINLDHPASFDTMAMDPKMKMALIEDLDRFTRRK 230

Query: 186 ----------------------------TTMGNHLKLKIYDMDLREVQYNSDLSRLLIGX 206
                                        TM N+LK  +YD+DL+EVQ +SDL RLLIG 
Sbjct: 231 EFYRRVGKAWKRGYLLYGPPGSGKSSLVATMANYLKFDVYDLDLKEVQCDSDLRRLLIG- 290

[Close]
BLAST of Carg08710 vs. TAIR10
Match: AT5G17760.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-22
Identity = 53/124 (42.74%), Postives = 67/124 (54.03%), Query Frame = 0 

Query: 83  MGNHLKLKIYDMDLREVQYNSDLSRLLIG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           M N+LK  +YD+ L  V  +SDL RLL+                                
Sbjct: 273 MANYLKFDVYDLQLASVMRDSDLRRLLLATRNRSILVIEDIDCAVDLPNRIEQPVEGKNR 332

Query: 143 XXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLHLHMSYCNF 202
                 +T  GLLNFIDGLWSSCGDERI++ T NH DRLDPALLR   MD+H++M +C+F
Sbjct: 333 GESQGPLTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYMGHCSF 392

Query: 203 SGFR 206
            GF+
Sbjct: 393 QGFK 396

[Close]
BLAST of Carg08710 vs. TAIR10
Match: AT3G50940.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-22
Identity = 79/331 (23.87%), Postives = 116/331 (35.05%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q   V+EE      NQ+F++A  YL  K+++S R +KV+KLEK+   ++ ++R++E+VD 
Sbjct: 59  QMTAVIEEFGGFEHNQVFEAAEAYLSTKISNSTRRIKVNKLEKQSNYSVTVERDEEVVDI 118

Query: 66  FEGVNFKWVLV------------------------------------------------- 125
           F+GV   W+LV                                                 
Sbjct: 119 FDGVKLSWILVCRHVDKKDFRNPRDLNSTLKSEVRSYELSFRKKFKNMVLESYLPFVVEQ 178

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 179 AASIKQKFKTLKIFTVDSYSVEWTSVTLDHPSTFRTLALDPEVKKNLVEDLDRFVQRKGF 238

Query: 186 ----------------------SARRTTMGNHLKLKIYDMDLREVQYNSDLSRLLIGXXX 206
                                 S+    + NHL   IYD+DL  +  N++L RLL+    
Sbjct: 239 YGRVGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIYDLDLTSLNNNAELRRLLMS--T 298

[Close]
BLAST of Carg08710 vs. TAIR10
Match: AT3G50930.1 (cytochrome BC1 synthesis)

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-20
Identity = 53/127 (41.73%), Postives = 65/127 (51.18%), Query Frame = 0 

Query: 83  MGNHLKLKIYDMDLREVQYNSDLSRLLIG----XXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           M NHL   IYD++L  V  NS+L RLLI                                
Sbjct: 319 MANHLNFDIYDLELTAVNNNSELRRLLIATANRSILIVEDIDCSLELKDRTSDEPPRESD 378

Query: 143 XXXXXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLHLHMSY 202
                    +T  GLLNFIDGLWSSCGDERI++ T N+ ++LD ALLR   MD+H+HMSY
Sbjct: 379 DIEDPRYKKVTLSGLLNFIDGLWSSCGDERIIIFTTNYKEKLDAALLRPGRMDMHIHMSY 438

Query: 203 CNFSGFR 206
           C  S F+
Sbjct: 439 CTPSTFK 445


HSP 2 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 25/70 (35.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q  +++EE +    N++F++A  YL  K++ S + +KV K EKE    + ++R++E+VD 
Sbjct: 105 QMTIIIEEFEGFAHNEVFEAAEAYLATKISPSNKRIKVSKHEKENNYNVTVERDEEVVDT 164

Query: 66  FEGVNFKWVL 76
           + GV F+W+L
Sbjct: 165 YNGVKFQWIL 174

[Close]
BLAST of Carg08710 vs. TAIR10
Match: AT3G28600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-19
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 0 

Query: 83  MGNHLKLKIYDMDLREVQYNSDLSRLL---------IGXXXXXXXXXXXXXXXXXXXXXX 142
           M NHL   IYD++L  ++ NS+L +LL         +                       
Sbjct: 258 MANHLNYSIYDLELTAIRNNSELRKLLTATSSKSIIVIEDIDCSLDLTGKRKKEKNLMTS 317

Query: 143 XXXXXXXXXXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLH 202
                         +T  GLLNFIDG+WS+CG ERI++ T NH ++LDPAL+RR  MD+H
Sbjct: 318 REDGEQGTEEDKSFVTLSGLLNFIDGIWSACGQERIIIFTTNHFEKLDPALIRRGRMDMH 377

Query: 203 LHMSYCNFSGFR 206
           + +SYC+F  F+
Sbjct: 378 IELSYCSFEAFK 389

[Close]
BLAST of Carg08710 vs. TAIR10
Match: AT4G25835.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-19
Identity = 53/143 (37.06%), Postives = 68/143 (47.55%), Query Frame = 0 

Query: 77  SARRTTMGNHLKLKIYDMDLREVQYNSDLSRLLIG--------------XXXXXXXXXXX 136
           S+    M N+L+  IYD++L EV+ NS+L +LL+                          
Sbjct: 251 SSMIAAMANYLRYDIYDLELTEVKSNSELRKLLMKTSSKSIIVIEDIDCSINLTNRNKKQ 310

Query: 137 XXXXXXXXXXXXXXXXXXXXXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDP 196
                                    IT  GLLNF DGLWS CG ERI V T NH+++LDP
Sbjct: 311 STGSYNEPEMLTGSGLGDDLGDGNTITLSGLLNFTDGLWSCCGSERIFVFTTNHIEKLDP 370

Query: 197 ALLRREHMDLHLHMSYCNFSGFR 206
           ALLR   MD+H+HMSYC FS  +
Sbjct: 371 ALLRSGRMDMHIHMSYCTFSSVK 393

[Close]
BLAST of Carg08710 vs. Swiss-Prot
Match: sp|Q9FN75|AATPI_ARATH (AAA-ATPase At5g17760 OS=Arabidopsis thaliana OX=3702 GN=At5g17760 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-21
Identity = 53/124 (42.74%), Postives = 67/124 (54.03%), Query Frame = 0 

Query: 83  MGNHLKLKIYDMDLREVQYNSDLSRLLIG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           M N+LK  +YD+ L  V  +SDL RLL+                                
Sbjct: 273 MANYLKFDVYDLQLASVMRDSDLRRLLLATRNRSILVIEDIDCAVDLPNRIEQPVEGKNR 332

Query: 143 XXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLHLHMSYCNF 202
                 +T  GLLNFIDGLWSSCGDERI++ T NH DRLDPALLR   MD+H++M +C+F
Sbjct: 333 GESQGPLTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYMGHCSF 392

Query: 203 SGFR 206
            GF+
Sbjct: 393 QGFK 396

[Close]
BLAST of Carg08710 vs. Swiss-Prot
Match: sp|Q147F9|AATPC_ARATH (AAA-ATPase At3g50940 OS=Arabidopsis thaliana OX=3702 GN=At3g50940 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-21
Identity = 79/331 (23.87%), Postives = 116/331 (35.05%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q   V+EE      NQ+F++A  YL  K+++S R +KV+KLEK+   ++ ++R++E+VD 
Sbjct: 59  QMTAVIEEFGGFEHNQVFEAAEAYLSTKISNSTRRIKVNKLEKQSNYSVTVERDEEVVDI 118

Query: 66  FEGVNFKWVLV------------------------------------------------- 125
           F+GV   W+LV                                                 
Sbjct: 119 FDGVKLSWILVCRHVDKKDFRNPRDLNSTLKSEVRSYELSFRKKFKNMVLESYLPFVVEQ 178

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 179 AASIKQKFKTLKIFTVDSYSVEWTSVTLDHPSTFRTLALDPEVKKNLVEDLDRFVQRKGF 238

Query: 186 ----------------------SARRTTMGNHLKLKIYDMDLREVQYNSDLSRLLIGXXX 206
                                 S+    + NHL   IYD+DL  +  N++L RLL+    
Sbjct: 239 YGRVGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIYDLDLTSLNNNAELRRLLMS--T 298

[Close]
BLAST of Carg08710 vs. Swiss-Prot
Match: sp|Q8VZG2|HSR4_ARATH (Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=HSR4 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.6e-19
Identity = 53/127 (41.73%), Postives = 65/127 (51.18%), Query Frame = 0 

Query: 83  MGNHLKLKIYDMDLREVQYNSDLSRLLIG----XXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           M NHL   IYD++L  V  NS+L RLLI                                
Sbjct: 319 MANHLNFDIYDLELTAVNNNSELRRLLIATANRSILIVEDIDCSLELKDRTSDEPPRESD 378

Query: 143 XXXXXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLHLHMSY 202
                    +T  GLLNFIDGLWSSCGDERI++ T N+ ++LD ALLR   MD+H+HMSY
Sbjct: 379 DIEDPRYKKVTLSGLLNFIDGLWSSCGDERIIIFTTNYKEKLDAALLRPGRMDMHIHMSY 438

Query: 203 CNFSGFR 206
           C  S F+
Sbjct: 439 CTPSTFK 445


HSP 2 Score: 60.8 bits (146), Expect = 2.0e-08
Identity = 25/70 (35.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q  +++EE +    N++F++A  YL  K++ S + +KV K EKE    + ++R++E+VD 
Sbjct: 105 QMTIIIEEFEGFAHNEVFEAAEAYLATKISPSNKRIKVSKHEKENNYNVTVERDEEVVDT 164

Query: 66  FEGVNFKWVL 76
           + GV F+W+L
Sbjct: 165 YNGVKFQWIL 174

[Close]
BLAST of Carg08710 vs. Swiss-Prot
Match: sp|F4J0C0|AATPA_ARATH (AAA-ATPase At3g28600 OS=Arabidopsis thaliana OX=3702 GN=At3g28600 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 0 

Query: 83  MGNHLKLKIYDMDLREVQYNSDLSRLL---------IGXXXXXXXXXXXXXXXXXXXXXX 142
           M NHL   IYD++L  ++ NS+L +LL         +                       
Sbjct: 258 MANHLNYSIYDLELTAIRNNSELRKLLTATSSKSIIVIEDIDCSLDLTGKRKKEKNLMTS 317

Query: 143 XXXXXXXXXXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDPALLRREHMDLH 202
                         +T  GLLNFIDG+WS+CG ERI++ T NH ++LDPAL+RR  MD+H
Sbjct: 318 REDGEQGTEEDKSFVTLSGLLNFIDGIWSACGQERIIIFTTNHFEKLDPALIRRGRMDMH 377

Query: 203 LHMSYCNFSGFR 206
           + +SYC+F  F+
Sbjct: 378 IELSYCSFEAFK 389

[Close]
BLAST of Carg08710 vs. Swiss-Prot
Match: sp|Q8RY66|AATPD_ARATH (AAA-ATPase At4g25835 OS=Arabidopsis thaliana OX=3702 GN=At4g25835 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-18
Identity = 53/143 (37.06%), Postives = 68/143 (47.55%), Query Frame = 0 

Query: 77  SARRTTMGNHLKLKIYDMDLREVQYNSDLSRLLIG--------------XXXXXXXXXXX 136
           S+    M N+L+  IYD++L EV+ NS+L +LL+                          
Sbjct: 251 SSMIAAMANYLRYDIYDLELTEVKSNSELRKLLMKTSSKSIIVIEDIDCSINLTNRNKKQ 310

Query: 137 XXXXXXXXXXXXXXXXXXXXXXXXXITQYGLLNFIDGLWSSCGDERIVVSTMNHLDRLDP 196
                                    IT  GLLNF DGLWS CG ERI V T NH+++LDP
Sbjct: 311 STGSYNEPEMLTGSGLGDDLGDGNTITLSGLLNFTDGLWSCCGSERIFVFTTNHIEKLDP 370

Query: 197 ALLRREHMDLHLHMSYCNFSGFR 206
           ALLR   MD+H+HMSYC FS  +
Sbjct: 371 ALLRSGRMDMHIHMSYCTFSSVK 393

[Close]
BLAST of Carg08710 vs. TrEMBL
Match: tr|A0A0A0LG59|A0A0A0LG59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G860250 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 122/336 (36.31%), Postives = 140/336 (41.67%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q I+V+EELD LT NQMFD+ANVYLG K++SS R +KVHK +KE+ LA+ IDRNQE
Sbjct: 54  RFSSQLIIVIEELDGLTVNQMFDAANVYLGTKVSSSTRRIKVHKPQKEKELAVTIDRNQE 113

Query: 62  LVDKFEGVNFKWVLVSAR------------------------------------------ 121
           L+D F+GVNFKWVLVS+R                                          
Sbjct: 114 LIDIFQGVNFKWVLVSSRIERPISSKNRNANVHEHSDVRHFELSFHKKHREMALRFYLPH 173

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 174 ILREANTIGDEKKAMKLHTIDYNGTHYWGSIDLNHPATFDTIAMNPETKKALIDDLNTFI 233

Query: 182 ------------------------------RTTMGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            M N+LK  IYDMDL+EVQYNSDL RLL
Sbjct: 234 ERKEYYRRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMDLKEVQYNSDLRRLL 293

[Close]
BLAST of Carg08710 vs. TrEMBL
Match: tr|A0A1S3CSS5|A0A1S3CSS5_CUCME (AAA-ATPase At3g50940-like OS=Cucumis melo OX=3656 GN=LOC103503918 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 122/336 (36.31%), Postives = 141/336 (41.96%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q I+V+EELD LT NQMFD+ANVYLG KL+SS R +KVHK +KE+ LA+ IDRNQE
Sbjct: 55  RFSSQLIIVIEELDGLTVNQMFDAANVYLGTKLSSSSRRIKVHKPQKEKELAVTIDRNQE 114

Query: 62  LVDKFEGVNFKWVLVSAR--RTT------------------------------------- 121
           ++D F+GVNFKWVLVS+R  R T                                     
Sbjct: 115 IIDIFQGVNFKWVLVSSRIERPTSSKNRDANAHERSDVRHFELSFHQKHREMALRFYLPH 174

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 175 ILREANAIGDEKKAVKLHTIDYSGTDYWGSIDLNHPATFDTIAMNPETKKALIDDLNTFI 234

Query: 182 ---------------------------------MGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            + N+LK  IYDMDLREVQ NSDL RLL
Sbjct: 235 ERKEYYKRVGRAWKRGYLLYGPPGTGKSSLVAAVANYLKFDIYDMDLREVQCNSDLRRLL 294

[Close]
BLAST of Carg08710 vs. TrEMBL
Match: tr|A0A1Q3CWN0|A0A1Q3CWN0_CEPFO (AAA domain-containing protein/AAA_assoc domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28026 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.8e-34
Identity = 110/336 (32.74%), Postives = 133/336 (39.58%), Query Frame = 0 

Query: 2   RSYKQSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQE 61
           R   Q  VV+EE D LTANQMF +ANVYLG+KL+ S++ +KVHK EKE++L + ID+NQE
Sbjct: 54  RLSSQITVVIEEFDGLTANQMFYAANVYLGSKLSPSVQRIKVHKPEKEKQLDVSIDKNQE 113

Query: 62  LVDKFEGVNFKWVLVSAR------------------------------------------ 121
           LVD F GV FKWVLVS+R                                          
Sbjct: 114 LVDLFSGVKFKWVLVSSRVQKSVPHKKGNSNGISREEIRYLEVTFNKKHRDMVLKSYLPY 173

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 174 VLQKAQKIRENKKAVKLHTIDYNGTDYWGSINLDHPATFDTMAMDPVMKKELIEDLDRFV 233

Query: 182 ------------------------------RTTMGNHLKLKIYDMDLREVQYNSDLSRLL 206
                                            M N+LK  +YD+DL++VQ NSDL RLL
Sbjct: 234 SRKEYYRRIGKAWKRGYLLYGPPGSGKSSLIAAMANYLKFDVYDLDLKDVQCNSDLRRLL 293

[Close]
BLAST of Carg08710 vs. TrEMBL
Match: tr|A0A1R3IY84|A0A1R3IY84_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_08954 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.6e-33
Identity = 108/330 (32.73%), Postives = 129/330 (39.09%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q  VV+E+ D LT+NQMF +AN+YLG KL+SS R +KV+K EKE+ L L  D+NQEL+D 
Sbjct: 58  QLTVVIEDSDGLTSNQMFHAANLYLGEKLSSSTRRVKVNKPEKEEELRLTTDKNQELIDV 117

Query: 66  FEGVNFKWVLVSAR---------------------------------------------- 125
           F+GV  KWVL+S+R                                              
Sbjct: 118 FKGVKLKWVLLSSRINQKSVSNKKNSSNKEETWYFELSFHKKHREIVLSSYLPYVLQKAK 177

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 178 EIREEKKTLKLHTIDYNGTDYWGSIKLDHPATFDTVAMDPEMKMALIEDLDRFKSRKEFY 237

Query: 186 ------------------------RTTMGNHLKLKIYDMDLREVQYNSDLSRLLIGXXXX 206
                                      M NHLK  +YD+DL+EVQ NSDL RLLIG    
Sbjct: 238 RRVGKAWKRGYLLYGPPGTGKSSLVAAMANHLKFDVYDLDLKEVQCNSDLRRLLIG---- 297

[Close]
BLAST of Carg08710 vs. TrEMBL
Match: tr|A0A0D2UUT2|A0A0D2UUT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G271800 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.6e-33
Identity = 107/330 (32.42%), Postives = 129/330 (39.09%), Query Frame = 0 

Query: 6   QSIVVVEELDVLTANQMFDSANVYLGAKLTSSLRGLKVHKLEKEQRLALIIDRNQELVDK 65
           Q  VV+EE D LTANQ+F +ANVYLG KL+SS   +KV+K +KE+RL +  D+NQE+VD 
Sbjct: 58  QLTVVIEESDGLTANQVFHAANVYLGEKLSSSTPRIKVNKPQKEKRLQVTTDKNQEMVDV 117

Query: 66  FEGVNFKWVLVSARR--------------------------------------------- 125
           F+GV  KWVL+S  R                                             
Sbjct: 118 FKGVKLKWVLLSTSRNHVLKKNNKNGVLKEEIRYFELSFHKKNREMVLGSYLPYLLQKAK 177

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 178 EIKEKNKTLKLHTVDYNGTDYWGSISLDHPASFDTMAMDPTVKTALIEDLDRFSRRREFY 237

Query: 186 -------------------------TTMGNHLKLKIYDMDLREVQYNSDLSRLLIGXXXX 206
                                      M N+LK  +YD+DL+E+Q NSDL RLLIG    
Sbjct: 238 RRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVYDLDLKEIQCNSDLRRLLIG---- 297

The following BLAST results are available for this feature:
BLAST of Carg08710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59989.12.4e-4236.31hypothetical protein Csa_3G860250 [Cucumis sativus][more]
XP_004147876.22.4e-4236.31PREDICTED: probable mitochondrial chaperone BCS1-A [Cucumis sativus][more]
XP_022142231.17.6e-4137.20AAA-ATPase At3g50940-like [Momordica charantia][more]
XP_008466531.11.7e-4036.31PREDICTED: AAA-ATPase At3g50940-like [Cucumis melo][more]
XP_022762875.15.3e-3433.63AAA-ATPase At3g50940-like [Durio zibethinus][more]
BLAST of Carg08710 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17760.13.3e-2242.74P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT3G50940.14.3e-2223.87P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT3G50930.13.1e-2041.73cytochrome BC1 synthesis[more]
AT3G28600.11.2e-1935.61P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT4G25835.12.6e-1937.06P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
BLAST of Carg08710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FN75|AATPI_ARATH6.0e-2142.74AAA-ATPase At5g17760 OS=Arabidopsis thaliana OX=3702 GN=At5g17760 PE=3 SV=1[more]
sp|Q147F9|AATPC_ARATH7.8e-2123.87AAA-ATPase At3g50940 OS=Arabidopsis thaliana OX=3702 GN=At3g50940 PE=2 SV=1[more]
sp|Q8VZG2|HSR4_ARATH5.6e-1941.73Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=HSR4 PE=2... [more]
sp|F4J0C0|AATPA_ARATH2.1e-1835.61AAA-ATPase At3g28600 OS=Arabidopsis thaliana OX=3702 GN=At3g28600 PE=2 SV=1[more]
sp|Q8RY66|AATPD_ARATH4.7e-1837.06AAA-ATPase At4g25835 OS=Arabidopsis thaliana OX=3702 GN=At4g25835 PE=2 SV=1[more]
BLAST of Carg08710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LG59|A0A0A0LG59_CUCSA1.6e-4236.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G860250 PE=3 SV=1[more]
tr|A0A1S3CSS5|A0A1S3CSS5_CUCME1.1e-4036.31AAA-ATPase At3g50940-like OS=Cucumis melo OX=3656 GN=LOC103503918 PE=3 SV=1[more]
tr|A0A1Q3CWN0|A0A1Q3CWN0_CEPFO7.8e-3432.74AAA domain-containing protein/AAA_assoc domain-containing protein OS=Cephalotus ... [more]
tr|A0A1R3IY84|A0A1R3IY84_COCAP8.6e-3332.73Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_08954 PE=4 ... [more]
tr|A0A0D2UUT2|A0A0D2UUT2_GOSRA8.6e-3332.42Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G271800 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR025753AAA_N_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08710-RACarg08710-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025753AAA-type ATPase, N-terminal domainPFAMPF14363AAA_assoccoord: 4..76
e-value: 5.6E-15
score: 55.4
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 77..198
e-value: 7.7E-16
score: 60.3
NoneNo IPR availablePANTHERPTHR23070BCS1 AAA-TYPE ATPASEcoord: 82..205
NoneNo IPR availablePANTHERPTHR23070:SF81PROTEIN HYPER-SENSITIVITY-RELATED 4coord: 82..205
NoneNo IPR availablePANTHERPTHR23070BCS1 AAA-TYPE ATPASEcoord: 5..78
NoneNo IPR availablePANTHERPTHR23070:SF81PROTEIN HYPER-SENSITIVITY-RELATED 4coord: 5..78
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 113..196
e-value: 2.2E-5
score: 24.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 83..199

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08710CmoCh09G001360Cucurbita moschata (Rifu)carcmoB0144
Carg08710Cp4.1LG06g00900Cucurbita pepo (Zucchini)carcpeB0154
Carg08710Cla97C01G019240Watermelon (97103) v2carwmbB0105
Carg08710Cla97C05G100130Watermelon (97103) v2carwmbB0107
Carg08710Bhi09G001864Wax gourdcarwgoB0121
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg08710Carg00623Silver-seed gourdcarcarB121
Carg08710Carg16061Silver-seed gourdcarcarB123
The following block(s) are covering this gene:
GeneOrganismBlock
Carg08710Wax gourdcarwgoB0118
Carg08710Wax gourdcarwgoB0120
Carg08710Silver-seed gourdcarcarB119
Carg08710Silver-seed gourdcarcarB125
Carg08710Silver-seed gourdcarcarB126
Carg08710Cucumber (Gy14) v2carcgybB0110
Carg08710Cucumber (Gy14) v2carcgybB0111
Carg08710Cucumber (Gy14) v2carcgybB0114
Carg08710Cucumber (Gy14) v1carcgyB0124
Carg08710Cucumber (Gy14) v1carcgyB0126
Carg08710Cucurbita maxima (Rimu)carcmaB0134
Carg08710Cucurbita maxima (Rimu)carcmaB0135
Carg08710Cucurbita maxima (Rimu)carcmaB0136
Carg08710Cucurbita maxima (Rimu)carcmaB0137
Carg08710Cucurbita moschata (Rifu)carcmoB0145
Carg08710Cucurbita moschata (Rifu)carcmoB0146
Carg08710Cucurbita moschata (Rifu)carcmoB0147
Carg08710Cucurbita pepo (Zucchini)carcpeB0152
Carg08710Cucurbita pepo (Zucchini)carcpeB0153
Carg08710Cucurbita pepo (Zucchini)carcpeB0155
Carg08710Wild cucumber (PI 183967)carcpiB0115
Carg08710Wild cucumber (PI 183967)carcpiB0116
Carg08710Cucumber (Chinese Long) v2carcuB0110
Carg08710Cucumber (Chinese Long) v2carcuB0111
Carg08710Cucumber (Chinese Long) v3carcucB0119
Carg08710Cucumber (Chinese Long) v3carcucB0120
Carg08710Bottle gourd (USVL1VR-Ls)carlsiB094
Carg08710Bottle gourd (USVL1VR-Ls)carlsiB096
Carg08710Melon (DHL92) v3.5.1carmeB0105
Carg08710Melon (DHL92) v3.5.1carmeB0106
Carg08710Melon (DHL92) v3.6.1carmedB0107
Carg08710Melon (DHL92) v3.6.1carmedB0108
Carg08710Watermelon (Charleston Gray)carwcgB0103
Carg08710Watermelon (Charleston Gray)carwcgB0104
Carg08710Watermelon (Charleston Gray)carwcgB0106
Carg08710Watermelon (97103) v1carwmB0101
Carg08710Watermelon (97103) v1carwmB0102
Carg08710Watermelon (97103) v2carwmbB0109