Carg08690 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08690
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP synthase E chain
Location	Cucurbita_argyrosperma_scaffold_057 : 523984 .. 525814 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTATTTACTGTTTCTTTTACCTTTAATCATTTGCAGTGATTTTATTTAGCTCGATCCCTGTGATGTCCCGTATCCACTCTGTTCTTTTCAAGCTGGTTAGAATAGGATTTCAATGCATCTAGATTTTTTCGTTCCGAATTCTCCACGAGGTGGTAATTGGTGAGAATGGATGGATCTGCGATTCAAAAAATTTTATTTTCTTTTTCGTATTTCTTCATTATTTTGTTTTTATATCCTTTATTGGGAATGAGATGGATCCTGTTCATTTGAGATTCTGAATCTTTTTTGGGAATTGATTTCTGCAGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGGTAAATTGGAATCAACTTCTGTTCCAACCGTTGTTGTTATCGTAAATTTATTGAAATGGTTATTTTTGTAGTTGATTGTATGGCGCCTCTGCTAAATCAACTCCGTATTTATTAATAATGACTATTTTCACTCCTTAATGGACATGAACTCAACATTAACCTGTTTCACTAATGGTTTCAACTTGTTTTCTTTTGGAGACAAGATTTCTTCACTGCCTTATTTTCATGGGCATTTCTAATTTAAGGAAGAAGTCTCGTTGGACACTTGAAGTTCAAATCTTGTACCTGTTAATTGGCTCAACTGTGACCCAAAAATTTTCTGAAAGAAAATTGGCTGTATGTGTTCATATGCATTTAGCTGTAAGACATTTTTGTTGATGAGTTTCTTCTGGTTACGTCATCTTCAATTCCATGCCTTATAATTTGTTTTTTTACAGCATGTAAGCACAGGAAACATAGACCGGCTTATATATCTTGATCAGTTAATTGTATAGAATATGAATTTGATTGTCTAATAACGTGTCTTTTGGCTGTATTTTCGTGCATTTGCCAGGCAAAGGCCAAGTCACGCGCGAAAGCTGAAGCCAAGGCCCATCATTGATGAACACTTTTCCTGACGTAGCTTATAGCGATGGAAGAGATGGAAATTACCGCATAGGGAGAGACTCCGATCATTGGTTGGAGAATGTGATTTTTGGCTTGATAATTAATTAGATTCAGTTTTTTTTTTTTTTCCTTTTTTCTTTTCCTTCACTGCTGAAACAAAAGAAAAGTTCTCTGTTTAAACGGGGTTGGTATTGCTGCAAATACTATATGGTGTATGCTTAGTTTTTCAGTTCCGATTGGCAATTCTGCCTGTGAGAAGAATGTTCTTGAAATAAAGGTGACGCCATACTGATAAATAAGACTCGTTTGAGATTTATTTTTTATCACAGTACCACTTCTAATCTCACTTTTGAGTTAAAGCTTTATGATTGGTATTGATCTCTATCCTGTGGTTCAGTTTATAGGGTCGTGTTCTAAGAAATAAAAGAAAACAGAAACACAAGGCAGTGTATGAGCAAAAACTCTAGAACATATTATCTTACTATAAAATCTCTAGACAACGGAAATATGCAAATGAAAGACAGGCAACAAAGATAAGGCTCCATCGTGAACCTTGCATACCCAGATGGATGGTTCGTGGGTATACCTTCAGAAGGCGCAGCATGGCTAACTTGTTGAAGTTTTTTCTTTTGTTCTACTGAATTCAGAAAGAGTACAATTTGGAAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACTCGGCCTTCTTCGAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

mRNA sequence

ATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGAAAGAGTACAATTTGGAAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACTCGGCCTTCTTCGAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

Coding sequence (CDS)

ATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGAAAGAGTACAATTTGGAAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACTCGGCCTTCTTCGAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

Protein sequence

MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDESFMLTLGLLRACDSNYTKLDSRLTKKKNRPS

Homology

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: XP_022974819.1 (uncharacterized protein LOC111473599 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 8.0e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: KHN11749.1 (hypothetical protein glysoja_006202 [Glycine soja])

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTST 52
          MA PPGPYSGTSTLALVARASAF+FGLVYG IKLK LK  Y     ++T T
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGTIKLKYLKVLYEARTPDTTRT 51

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: XP_006473623.1 (uncharacterized protein LOC102619089 [Citrus sinensis] >XP_006473624.1 uncharacterized protein LOC102619089 [Citrus sinensis] >XP_006473625.1 uncharacterized protein LOC102619089 [Citrus sinensis] >XP_006473626.1 uncharacterized protein LOC102619089 [Citrus sinensis] >XP_024040407.1 uncharacterized protein LOC18042396 [Citrus clementina] >XP_024040408.1 uncharacterized protein LOC18042396 [Citrus clementina] >XP_024040409.1 uncharacterized protein LOC18042396 [Citrus clementina] >ESR48384.1 hypothetical protein CICLE_v10003088mg [Citrus clementina] >KDO84790.1 hypothetical protein CISIN_1g0354532mg [Citrus sinensis] >KDO84791.1 hypothetical protein CISIN_1g0354532mg [Citrus sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILK 38

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: OVA12848.1 (hypothetical protein BVC80_1805g53 [Macleaya cordata])

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVL 38
          MALPPGPYSGTSTLALVARASAFTFG+VYGN+KLK L
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGIVYGNLKLKYL 37

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: GAY42951.1 (hypothetical protein CUMW_070880 [Citrus unshiu])

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILK 38

[Close]

BLAST of Carg08690 vs. TAIR10
Match: AT5G15320.1 (unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 9.7e-11
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK-KEYNLEGTESTS 51
          M LPPG YSGTS+LALVARASAF  GLVYGN+KLKVLK K  + +  E+T+
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATA 51

[Close]

BLAST of Carg08690 vs. TAIR10
Match: AT3G01130.1 (unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYN 43
          MA PPG YSGTSTLALVARASAF  GL+YGNIKLK LK + N
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKN 42

[Close]

BLAST of Carg08690 vs. TrEMBL
Match: tr|A0A067H1L4|A0A067H1L4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0354532mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILK 38

[Close]

BLAST of Carg08690 vs. TrEMBL
Match: tr|V4V8B9|V4V8B9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003088mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILK 38

[Close]

BLAST of Carg08690 vs. TrEMBL
Match: tr|A0A200QQW3|A0A200QQW3_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1805g53 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVL 38
          MALPPGPYSGTSTLALVARASAFTFG+VYGN+KLK L
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGIVYGNLKLKYL 37

[Close]

BLAST of Carg08690 vs. TrEMBL
Match: tr|A0A2H5NSK9|A0A2H5NSK9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_070880 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILK 38

[Close]

BLAST of Carg08690 vs. TrEMBL
Match: tr|A0A2H5QBK6|A0A2H5QBK6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_214090 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDES 60
          MA PPGPYSGTS+LALVAR SAF+FGLVYGNIKLK LK    +        + P      
Sbjct: 1  MAPPPGPYSGTSSLALVARVSAFSFGLVYGNIKLKYLKPPITITFVVQEYASFPDGCSTV 60

Query: 61 FMLTLGLLRACDS 74
          FM    + R+C S
Sbjct: 61 FMEAEQICRSCKS 73

The following BLAST results are available for this feature:

BLAST of Carg08690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974819.1	8.0e-11	100.00	uncharacterized protein LOC111473599 [Cucurbita maxima]	[more]
KHN11749.1	2.6e-09	72.55	hypothetical protein glysoja_006202 [Glycine soja]	[more]
XP_006473623.1	3.4e-09	89.47	uncharacterized protein LOC102619089 [Citrus sinensis] >XP_006473624.1 uncharact...	[more]
OVA12848.1	3.4e-09	91.89	hypothetical protein BVC80_1805g53 [Macleaya cordata]	[more]
GAY42951.1	3.4e-09	89.47	hypothetical protein CUMW_070880 [Citrus unshiu]	[more]

BLAST of Carg08690 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15320.1	9.7e-11	68.63	unknown protein	[more]
AT3G01130.1	1.3e-10	78.57	unknown protein	[more]

BLAST of Carg08690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A067H1L4\|A0A067H1L4_CITSI	2.2e-09	89.47	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0354532mg PE=4 SV=...	[more]
tr\|V4V8B9\|V4V8B9_9ROSI	2.2e-09	89.47	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003088mg PE=4 ...	[more]
tr\|A0A200QQW3\|A0A200QQW3_9MAGN	2.2e-09	91.89	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1805g53 PE=4 SV=1	[more]
tr\|A0A2H5NSK9\|A0A2H5NSK9_CITUN	2.2e-09	89.47	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_070880 PE=4 SV=1	[more]
tr\|A0A2H5QBK6\|A0A2H5QBK6_CITUN	2.9e-09	53.42	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_214090 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08690-RA	Carg08690-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36028	FAMILY NOT NAMED	coord: 1..39

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08690	Cla020816	Watermelon (97103) v1	carwmB0102
Carg08690	Csa3G866500	Cucumber (Chinese Long) v2	carcuB0111
Carg08690	MELO3C003769	Melon (DHL92) v3.5.1	carmeB0106
Carg08690	ClCG05G018500	Watermelon (Charleston Gray)	carwcgB0104
Carg08690	CSPI03G43230	Wild cucumber (PI 183967)	carcpiB0116
Carg08690	Cucsa.342860	Cucumber (Gy14) v1	carcgyB0126
Carg08690	CmaCh01G019580	Cucurbita maxima (Rimu)	carcmaB0136
Carg08690	CmaCh09G001190	Cucurbita maxima (Rimu)	carcmaB0134
Carg08690	CmoCh09G001160	Cucurbita moschata (Rifu)	carcmoB0144
Carg08690	CmoCh01G020160	Cucurbita moschata (Rifu)	carcmoB0146
Carg08690	Lsi04G017250	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08690	Cp4.1LG06g00980	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08690	Cp4.1LG02g07860	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08690	MELO3C003769.2	Melon (DHL92) v3.6.1	carmedB0108
Carg08690	CsaV3_3G045680	Cucumber (Chinese Long) v3	carcucB0120
Carg08690	Cla97C05G099840	Watermelon (97103) v2	carwmbB0107
Carg08690	Bhi09G001807	Wax gourd	carwgoB0120

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08690	Carg17185	Silver-seed gourd	carcarB125

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08690	Silver-seed gourd	carcarB121
Carg08690	Silver-seed gourd	carcarB126
Carg08690	Cucumber (Gy14) v2	carcgybB0110
Carg08690	Cucumber (Gy14) v2	carcgybB0111
Carg08690	Cucurbita maxima (Rimu)	carcmaB0135
Carg08690	Cucurbita maxima (Rimu)	carcmaB0137
Carg08690	Cucurbita moschata (Rifu)	carcmoB0145
Carg08690	Cucurbita moschata (Rifu)	carcmoB0147
Carg08690	Cucurbita pepo (Zucchini)	carcpeB0152
Carg08690	Cucurbita pepo (Zucchini)	carcpeB0155
Carg08690	Wild cucumber (PI 183967)	carcpiB0115
Carg08690	Cucumber (Chinese Long) v2	carcuB0110
Carg08690	Cucumber (Chinese Long) v3	carcucB0119
Carg08690	Bottle gourd (USVL1VR-Ls)	carlsiB096
Carg08690	Melon (DHL92) v3.5.1	carmeB0105
Carg08690	Melon (DHL92) v3.6.1	carmedB0107
Carg08690	Watermelon (Charleston Gray)	carwcgB0106
Carg08690	Watermelon (97103) v1	carwmB0101
Carg08690	Watermelon (97103) v2	carwmbB0105
Carg08690	Watermelon (97103) v2	carwmbB0109