Carg08678 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08678
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	AP complex subunit sigma
Location	Cucurbita_argyrosperma_scaffold_057 : 466127 .. 468112 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTCCCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTTTGTTCTTCATTTTCTTACTCTTGCTTCCACCATATTGTTTACCAATGTAGGTTCTGTATATCTGTTTTGAAAGACTGGTCTTGCAACCCTCCTTTCACTTGTATGGATATCATGTGATGTTTGTTTATCTATTCTATTTACCAAGTAATTAGCTATACCGGTTGTCGTCAATTTCTTAATTGAAGAACAATTTATCTTTCCCACTACCTGATGCATTTGCTGCATTCTCTGTTTGTGAGGCTCCAATTCAAATTCTTTGTGAACAAATGTTCCATCTTACTCTATTCAGTTTCTTATTTTCAACAATGGCAATCAAATTCCTTGCATATTTTCTCTTTTGCTTTAGTTGATGACGATTCTTGCATATATATTTGCCTCCTTTCTAGTTGTTAGTTGTAAGTTTGAAGATTCGTTATTTCAGATTTGTTATTGTAATTGTTGTGTTGAATCTGCTACCAAATTGATCCCCATTTTTATGCTGAATCTGATGAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGTAAAGTATTGTCTGCTTATTCTTAGTAATTGTGATTTTCCCGTTACCTGACTGTCAAAACACCTGCCGATACAATCGTCATAGAGTTGTAGATGTTGTCCATGCCTTGCCATGAAGCCACATCATGAGCTGGAGTATCAGTTTTCAAAGAATATTATGTTCTTAGTAACTTATTTATACGGATTTTATTTGCCTAAAATCTCACGTCTAAATTACTTTTTTCCATCAAAAAACTTTCAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGAAGATAGTACATGTCAAAGAGCTAAGATTGCAATTTGTTTTCCGTGACAGAGTTGATTGTGTTACGATTTCAGTTTTCTTTGTTTCCCCCACAGTATATTTGTCCGTGTGGTCTTTGTTGTGACAGATAGAGTCCCTTGCATCACCTTTGCATAGTTTTTGAACATTTCAGAACATCAAACCCTCTATAAATAGTGAAATCTACAGTATTCATTCTTGTTGATATACTTCTAGAATCGAAGTTATTATCTCAATTATTCTTTATTTTGGATATGTGTGATCTGAGACGTAACATCATCATTATAGAACATTGCCTAGGGACACTTGTGCCTGCCACCATGTGTAGTCATGTTAGCATAGCAGGGACAAACATCATAGTTGCCTGAAGTGCCTGGTGGAACGCATTGACAGCGAGCGCAGCAGGTTCCACATGCCCTCTTGCAGATCTTTTGCCTCGACGATAATTGGCATCTCGCATCACAAGATTCTCCACAATCTGCAATAGATTCAGGTATTGGTCAGGAAGCAAGAAGCATTAACATAACAATGTGGGTGCAGGTGCTCAAATCTCTCTGTTACCTATCTCGCCAGGAAGAGGGCTATCAACCTGAGTTGTGATAACCTGAAAGGACACAATACAGTGAGGTAATAAGGCCACAAAGTTGAGAGTATCAGAAATGAACAGAGAAATAAAATGGAAGAAGGATTACCATTTGGGCTGATTCCATAAGGAGCACAAAAGCAAAAGCAATAAGAAGCATAGCAAACACAAGACCTTTAGTTGCTGCCATTAGAAATCTGGATGGGGTATTGGTTATGCAAGAGGTGTCTGTTTATAGGGGGTTGTGGAAAGGGAATACAGTGAAGAAATCTAAGAAGTTAGGTAAATATATTTTTTGGTTGAGATGGGGTCTTG

mRNA sequence

ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTCCCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGAAGATAGTACATGTCAAAGAGCTAAGATTGCAATTTGTTTTCCGTGACAGAGTTGATTGTGTTACGATTTCAGTTTTCTTTGTTTCCCCCACAGTATATTTGTCCGTGTGGTCTTTGTTGTGACAGATAGAGTCCCTTGCATCACCTTTGCATAGTTTTTGAACATTTCAGAACATCAAACCCTCTATAAATAGTGAAATCTACAGTATTCATTCTTGTTGATATACTTCTAGAATCGAAGTTATTATCTCAATTATTCTTTATTTTGGATATGTGTGATCTGAGACGTAACATCATCATTATAGAACATTGCCTAGGGACACTTGTGCCTGCCACCATGTGTAGTCATGTTAGCATAGCAGGGACAAACATCATAGTTGCCTGAAGTGCCTGGTGGAACGCATTGACAGCGAGCGCAGCAGGTTCCACATGCCCTCTTGCAGATCTTTTGCCTCGACGATAATTGGCATCTCGCATCACAAGATTCTCCACAATCTGCAATAGATTCAGAAATGAACAGAGAAATAAAATGGAAGAAGGATTACCATTTGGGCTGATTCCATAAGGAGCACAAAAGCAAAAGCAATAAGAAGCATAGCAAACACAAGACCTTTAGTTGCTGCCATTAGAAATCTGGATGGGGTATTGGTTATGCAAGAGGTGTCTGTTTATAGGGGGTTGTGGAAAGGGAATACAGTGAAGAAATCTAAGAAGTTAGGTAAATATATTTTTTGGTTGAGATGGGGTCTTG

Coding sequence (CDS)

ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTCCCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

Protein sequence

MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Homology

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BLAST of Carg08678 vs. NCBI nr
Match: XP_015969839.1 (AP-2 complex subunit sigma isoform X3 [Arachis duranensis] >XP_025604905.1 AP-2 complex subunit sigma isoform X3 [Arachis hypogaea])

HSP 1 Score: 186.8 bits (473), Expect = 4.0e-44
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 3   SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 62
           S+  +++S L+++P  L+  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD
Sbjct: 12  SNTRFIASLLIETPNTLISLRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 71

Query: 63  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 72  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 121

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BLAST of Carg08678 vs. NCBI nr
Match: XP_016204798.1 (AP-2 complex subunit sigma isoform X3 [Arachis ipaensis] >XP_025659368.1 AP-2 complex subunit sigma isoform X3 [Arachis hypogaea])

HSP 1 Score: 185.7 bits (470), Expect = 8.8e-44
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 3   SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 62
           S+  +++S L+++P  L   RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD
Sbjct: 12  SNTRFIASLLIETPNTLTSLRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 71

Query: 63  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 72  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 121

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BLAST of Carg08678 vs. NCBI nr
Match: AAP40645.1 (clathrin coat assembly protein [Gossypium barbadense])

HSP 1 Score: 183.3 bits (464), Expect = 4.4e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

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BLAST of Carg08678 vs. NCBI nr
Match: XP_004136383.1 (PREDICTED: AP-2 complex subunit sigma [Cucumis sativus] >XP_022142554.1 AP-2 complex subunit sigma [Momordica charantia] >XP_022937105.1 AP-2 complex subunit sigma isoform X2 [Cucurbita moschata] >XP_022975656.1 AP-2 complex subunit sigma [Cucurbita maxima] >XP_023535342.1 AP-2 complex subunit sigma [Cucurbita pepo subsp. pepo] >KGN60033.1 Clathrin coat assembly protein ap17 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 4.4e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. NCBI nr
Match: XP_004291364.1 (PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca])

HSP 1 Score: 183.3 bits (464), Expect = 4.4e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 104 VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 163

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 164 VYLILDEFILAGELQETSKKAIIERMGELEKLE 196

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BLAST of Carg08678 vs. TAIR10
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 6.3e-44
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSK+AIIERM ELEKL+
Sbjct: 110 VYLILDEFILAGELQETSKRAIIERMSELEKLQ 142

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BLAST of Carg08678 vs. TAIR10
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  IEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKL 111
            Y ILDE ++AGELQE+SKK +   +   ++L
Sbjct: 110 AYYILDELLIAGELQESSKKTVARIISAQDQL 141

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BLAST of Carg08678 vs. TAIR10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-25
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  VEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKL 111
            Y ILDE ++AGELQE+SKK +   +   ++L
Sbjct: 110 AYYILDELLIAGELQESSKKTVARIISAQDQL 141

[Close]

BLAST of Carg08678 vs. TAIR10
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-18
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 14  QSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLV 73
           Q    ++ R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCELD++
Sbjct: 46  QQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIM 105

Query: 74  FNFHKVYLILDEFILAGELQETSKKAIIERMGELEK 110
           F+  K + +L+E ++ G + ETSK  I+  +  ++K
Sbjct: 106 FHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMDK 141

[Close]

BLAST of Carg08678 vs. TAIR10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-17
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 25  KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 84
           +++Y+ YA L+F L  D ++NELA L+ I + VE LD  FSNVCELD+VFN+ K++ +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 85  EFILAGELQETSKKAIIERMGELEKLE 112
           E +  G++ ETS   +++ + E+ KLE
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLE 147

[Close]

BLAST of Carg08678 vs. Swiss-Prot
Match: sp|Q84WL9|AP2S_ARATH (AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-42
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSK+AIIERM ELEKL+
Sbjct: 110 VYLILDEFILAGELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of Carg08678 vs. Swiss-Prot
Match: sp|O50016|AP2S1_MAIZE (AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.3e-37
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  V--YLILDEFILAGELQETSKK 99
           V  YLILDEFILAGELQETSK+
Sbjct: 110 VYRYLILDEFILAGELQETSKR 131

[Close]

BLAST of Carg08678 vs. Swiss-Prot
Match: sp|Q7SAQ1|AP2S_NEUCR (AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=aps-2 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-32
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FR HKV+YRRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+K
Sbjct: 51  VEFRNHKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYK 110

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 111 VYAILDEVFLAGEIEETSKQVVLTRLEHLDKLE 143

[Close]

BLAST of Carg08678 vs. Swiss-Prot
Match: sp|Q4WS49|AP2S_ASPFU (AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=aps2 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-31
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 22  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYL 81
           R+ K++YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY 
Sbjct: 56  RSTKIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYA 115

Query: 82  ILDEFILAGELQETSKKAIIERMGELEKLE 112
           ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 116 ILDEVFLAGEIEETSKQVVLTRLEHLDKLE 145

[Close]

BLAST of Carg08678 vs. Swiss-Prot
Match: sp|Q5BFF8|AP2S_EMENI (AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=aps2 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 22  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYL 81
           R+ K++YRRYAGLFF  CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY 
Sbjct: 56  RSTKIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYA 115

Query: 82  ILDEFILAGELQETSKKAIIERMGELEKLE 112
           ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 116 ILDEVFLAGEIEETSKQVVLTRLEHLDKLE 145

[Close]

BLAST of Carg08678 vs. TrEMBL
Match: tr|A0A2P2MI97|A0A2P2MI97_RHIMU (AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.6e-44
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           LQFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 4   LQFRTHKIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 63

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 64  VYLILDEFILAGELQETSKKAIIERMGELEKLE 96

[Close]

BLAST of Carg08678 vs. TrEMBL
Match: tr|A0A2I4DUY9|A0A2I4DUY9_9ROSI (AP complex subunit sigma OS=Juglans regia OX=51240 GN=LOC108983685 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. TrEMBL
Match: tr|M5XZ78|M5XZ78_PRUPE (AP complex subunit sigma OS=Prunus persica OX=3760 GN=PRUPE_1G365900 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. TrEMBL
Match: tr|B7FMB2|B7FMB2_MEDTR (AP complex subunit sigma OS=Medicago truncatula OX=3880 GN=11419257 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. TrEMBL
Match: tr|A0A2P5F7W9|A0A2P5F7W9_9ROSA (AP complex subunit sigma OS=Trema orientalis OX=63057 GN=TorRG33x02_102740 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 35  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 94

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 95  VYLILDEFILAGELQETSKKAIIERMGELEKLE 127

The following BLAST results are available for this feature:

BLAST of Carg08678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015969839.1	4.0e-44	86.36	AP-2 complex subunit sigma isoform X3 [Arachis duranensis] >XP_025604905.1 AP-2 ...	[more]
XP_016204798.1	8.8e-44	86.36	AP-2 complex subunit sigma isoform X3 [Arachis ipaensis] >XP_025659368.1 AP-2 co...	[more]
AAP40645.1	4.4e-43	97.85	clathrin coat assembly protein [Gossypium barbadense]	[more]
XP_004136383.1	4.4e-43	97.85	PREDICTED: AP-2 complex subunit sigma [Cucumis sativus] >XP_022142554.1 AP-2 com...	[more]
XP_004291364.1	4.4e-43	97.85	PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]	[more]

BLAST of Carg08678 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47830.1	6.3e-44	92.47	SNARE-like superfamily protein	[more]
AT2G17380.1	1.3e-25	55.43	associated protein 19	[more]
AT4G35410.2	2.2e-25	55.43	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	5.9e-18	44.79	SNARE-like superfamily protein	[more]
AT3G50860.1	2.3e-17	45.98	Clathrin adaptor complex small chain family protein	[more]

BLAST of Carg08678 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84WL9\|AP2S_ARATH	1.1e-42	92.47	AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1	[more]
sp\|O50016\|AP2S1_MAIZE	9.3e-37	92.68	AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1	[more]
sp\|Q7SAQ1\|AP2S_NEUCR	4.0e-32	69.89	AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A ...	[more]
sp\|Q4WS49\|AP2S_ASPFU	5.8e-31	70.00	AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293...	[more]
sp\|Q5BFF8\|AP2S_EMENI	1.0e-30	70.00	AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of Carg08678 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P2MI97\|A0A2P2MI97_RHIMU	7.6e-44	98.92	AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
tr\|A0A2I4DUY9\|A0A2I4DUY9_9ROSI	2.9e-43	97.85	AP complex subunit sigma OS=Juglans regia OX=51240 GN=LOC108983685 PE=3 SV=1	[more]
tr\|M5XZ78\|M5XZ78_PRUPE	2.9e-43	97.85	AP complex subunit sigma OS=Prunus persica OX=3760 GN=PRUPE_1G365900 PE=3 SV=1	[more]
tr\|B7FMB2\|B7FMB2_MEDTR	2.9e-43	97.85	AP complex subunit sigma OS=Medicago truncatula OX=3880 GN=11419257 PE=2 SV=1	[more]
tr\|A0A2P5F7W9\|A0A2P5F7W9_9ROSA	2.9e-43	97.85	AP complex subunit sigma OS=Trema orientalis OX=63057 GN=TorRG33x02_102740 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011012	Longin-like_dom_sf
IPR022775	AP_mu_sigma_su
IPR016635	AP_complex_ssu

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08678-RA	Carg08678-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.450.60		coord: 3..111 e-value: 2.6E-39 score: 136.3
None	No IPR available	PANTHER	PTHR11753:SF17	AP-2 COMPLEX SUBUNIT SIGMA	coord: 18..111
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 6..111 e-value: 3.5E-43 score: 145.0
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	CLATHRIN COAT ASSEMBLY PROTEIN	coord: 18..111
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 19..110 e-value: 3.4E-36 score: 124.2
IPR011012	Longin-like domain superfamily	SUPERFAMILY	SSF64356	SNARE-like	coord: 15..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08678	MELO3C003754	Melon (DHL92) v3.5.1	carmeB0106
Carg08678	MELO3C003754.2	Melon (DHL92) v3.6.1	carmedB0108
Carg08678	Bhi09G001787	Wax gourd	carwgoB0120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08678	Silver-seed gourd	carcarB122
Carg08678	Silver-seed gourd	carcarB125
Carg08678	Silver-seed gourd	carcarB126
Carg08678	Cucumber (Gy14) v2	carcgybB0110
Carg08678	Cucumber (Gy14) v2	carcgybB0111
Carg08678	Cucumber (Gy14) v1	carcgyB0126
Carg08678	Cucurbita maxima (Rimu)	carcmaB0134
Carg08678	Cucurbita maxima (Rimu)	carcmaB0135
Carg08678	Cucurbita maxima (Rimu)	carcmaB0136
Carg08678	Cucurbita maxima (Rimu)	carcmaB0137
Carg08678	Cucurbita moschata (Rifu)	carcmoB0144
Carg08678	Cucurbita moschata (Rifu)	carcmoB0145
Carg08678	Cucurbita moschata (Rifu)	carcmoB0146
Carg08678	Cucurbita moschata (Rifu)	carcmoB0147
Carg08678	Cucurbita pepo (Zucchini)	carcpeB0152
Carg08678	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08678	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08678	Cucurbita pepo (Zucchini)	carcpeB0155
Carg08678	Wild cucumber (PI 183967)	carcpiB0115
Carg08678	Wild cucumber (PI 183967)	carcpiB0116
Carg08678	Cucumber (Chinese Long) v2	carcuB0110
Carg08678	Cucumber (Chinese Long) v2	carcuB0111
Carg08678	Cucumber (Chinese Long) v3	carcucB0119
Carg08678	Cucumber (Chinese Long) v3	carcucB0120
Carg08678	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08678	Bottle gourd (USVL1VR-Ls)	carlsiB096
Carg08678	Melon (DHL92) v3.5.1	carmeB0105
Carg08678	Melon (DHL92) v3.6.1	carmedB0107
Carg08678	Watermelon (Charleston Gray)	carwcgB0104
Carg08678	Watermelon (Charleston Gray)	carwcgB0106
Carg08678	Watermelon (97103) v1	carwmB0101
Carg08678	Watermelon (97103) v1	carwmB0102
Carg08678	Watermelon (97103) v2	carwmbB0105
Carg08678	Watermelon (97103) v2	carwmbB0107
Carg08678	Watermelon (97103) v2	carwmbB0109