Carg08613 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08613
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Inner membrane localized protein
Location	Cucurbita_argyrosperma_scaffold_057 : 151608 .. 154589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGATATCTAATTCCTTGGTTTCAACCAAAAACCCTCAACTCCAGTTATCATCTGGTAATTCTTCTTACTCTCTAATTTCTTCCGCATTTGATCTTATCTCAGATTTTTGCTGTTGAATACTATTGGTTTTTCTTGTAATTTGTCTCTTGAATTACACCGAGCTTCAAATGGTGGCTACCTGCTACCCTTCACAATCTGCTTATCTCATAAATCGGCAGTGTTATATGTAGAAACCGCCTTGTTCCATGGGAAATTTGTGCGGGAACCGTGTATTTTCCCTATTGTTATGAAGCTTGCGGTTGGCTGTTTATCTTTTCTCGATTGCTGTCGAAATGCTCGGTTATTCTATTCGTTTCTGTTACGTGAACATGATGTCCTGATTTCCAAATCAATGAAAAATTTTCAACTCTTGGAAGATTGAATTTGACTAGTACATAGTTGCTCTCATTTTCATAATTTGGAAGAATTGGGGGGAGTATAAATGTATGGACACTTAAATTTTATTAGTCTAAATTTGCTCGCAAATTGTTTTTCCAGGATCAAATCTGAAAACTGCTGATAAACTTCTGGGGAGTGTGTCTCCCACCAGCTTGTTACTCAATCCTGGTTGGGTTGGAAAGGCGAAGCTTTCTACATCCAGGCGGCCACTTTCAGTTCAAGCTGCATATAGGTATAATCTACGGAATCGGTACTTAAACAACATGCCATTAAGTCATATTTTATGATAGAATTATAGTCTCCGAAGTCTCTTTACATGGTAGGAATGCATGTCTAGAATCCTTGTACGGGTAGGCTTATCATTGGGGCGTGCAAATTCTGGAAAAAGAATTTCCGTACTAAACCAAATTGAAGGTGTTAATCTCAGGCAGTCAACAACCAAGAATCTTACCAGTTTCAAATGATTCAGTTCAACTGGTTCAAACAGATTTTCAAACCGAAGGATGGGCCTTTTTGGGTTTCCATGTGCAAAACTGAGTCTCATTAATTTAGTTTTGAATTGGTGAAAGAATGATTGAATCAACATATTGAATGCATGTACTCATTCTACTCTAGATATCAAATCAAATGGTCGTTGAATTTGATCTATAAACTCTGTATGATTCCGGCTTGGAGTTATGCCTCCCTATGAGAGTGTAGCATTTGTTCCTATTATATTTGGGCGCTAGTGTTTAGAGGCAAGGCCGACATTTTGTGGAATTGTGCTGTCCATGCTCTCCTTTTGTTAATTTGTAAGGAGGAAAACAATATGATTTTTAAATACAAGGAGACTGCCTCCATCTGGAAAATTTAGCTCAAATCCTTCGTTTCCTAGGTGAAAGAGGCCTCTTCTTTTCATGGATTCTTTTTGGAATAGTATACATATAGCTTCATCGTGGTGTTCCAACCACACGATTTTTTTATAATTACAGCATTTTGATGATTATTAATTATTGGAAGCCTCTAATGGTCCCTTAGGTTGTTGCTCTCTCGTTTAGTCTATAAAGCATCGTTTCTTATTCAAATAATAATAATAAATCTCTGTATGGTTGAAAATAATGTACAGTCCATAGCAATTGTTAGTATCTCTTATAGCATTTAGTATAAGTTGCAAATTGTCATGGCAGTTGAGATTATTGTGTACCTTATGACAGTGATGGCGGACGGTCAAGCAATGCAGGCATTTTTGTTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACGCTTGGCTGTGTATATGCCCCTCAGGTTTTTGACGTTTGCTCATCTCTTATCTAAGCTCTAAATTGTACATATGAGAAATTCATCTTGTATATCTGTTACTTGTGTGCTATGGATACTACATTATGTAAGATACATATTATAGCAATCTACCAAGAAGTATGCACAACTGTTGTCTCTGGGCTTTCAGTTCGAAATCTTAGACTTTCAACTTTGCATGACTGAGAGTTGATCTTGTATTACAGATTAGCAAGGCACTTGCTGGAACAGATCGAAAAGAATTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGGTGCGAAATCACTCGTCTTTTTTTTTTTGTTGCAAGTTATCTCCTGAATGGACATTTGGTCTTCACTTGACACTGATTTAGCGAAGGCATTGATTTTATTTTATTTATTGGCAACATCATATACCCATCTTAACCACCCTGAGTTGGAAGAGTGATAATCAAGGTCCGTGAAAAAGTAAGCCGGAAAAAAATGAGTTCAAGTTCAAATCATTGTAGCCACCTATATCGGATTTAAAATTCTACTAGTTTTTATTTACCATCAAACGTAGTAGGGTCGAGTGGTTGTCCTCTTATATGAGTTGAGGTACATGTAAGCCGGCGCGGACACACACATTTATCACAAAAAATGAATTTGTATGTTTTCTTTCCAAGTCTCGTCAAGTTCTTGTCAATGATGTTAAAATGTGCTTGTGTAGTTTTAGTTTTGAAAATTCTGCTGGGGGTATTTGCTCGTTGAACGTGTTTTTTTAAAATTGAAATTGCAGAAAACAAGAAAAGTGCTGGCACAGAAGATAGAACAGTTGAACTCTGCGATTGATGAGGTTTCTTCTCAGCTCCGGACAGACGATCCCCCAAATGGAGTGGCCGTGAACTCTGACGAAATTGAACCTGCCATTTGAAATTTGGTCTTCCTGCACCGCTCACAACTCTGCGACCTGGAATAATAGTTAATTTTCTCTCTTGAACATTTGAACCCGAGCTTTGATGCTCCATAATGTGTTGTTATGATCGCTCAAATGCTCCATATAAAGTTTAATAGATTTGTAGAGCAGCATTCCTGCGCCGTGTTTCCTATTTTTTACACGGACAACGGGCTTTGTTTTTGTATTCGGAAGCCACTTATTTCATCCCTTCCGCCTTCTAGTTGCATTTTATGAATCGTTTAGCATTTTTTGAATTGTTGGCATTGTTGGCATTGTTTCTCAAAATAAGTTTTTGCAA

mRNA sequence

ATGGCTGCGATATCTAATTCCTTGGTTTCAACCAAAAACCCTCAACTCCAGTTATCATCTGGATCAAATCTGAAAACTGCTGATAAACTTCTGGGGAGTGTGTCTCCCACCAGCTTGTTACTCAATCCTGGTTGGGTTGGAAAGGCGAAGCTTTCTACATCCAGGCGGCCACTTTCAGTTCAAGCTGCATATAGGTATAATCTACGGAATCGTGATGGCGGACGGTCAAGCAATGCAGGCATTTTTGTTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGATCGAAAAGAATTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAGTGCTGGCACAGAAGATAGAACAGTTGAACTCTGCGATTGATGAGGTTTCTTCTCAGCTCCGGACAGACGATCCCCCAAATGGAGTGGCCGTGAACTCTGACGAAATTGAACCTGCCATTTGAAATTTGGTCTTCCTGCACCGCTCACAACTCTGCGACCTGGAATAATAGTTAATTTTCTCTCTTGAACATTTGAACCCGAGCTTTGATGCTCCATAATGTGTTGTTATGATCGCTCAAATGCTCCATATAAAGTTTAATAGATTTGTAGAGCAGCATTCCTGCGCCGTGTTTCCTATTTTTTACACGGACAACGGGCTTTGTTTTTGTATTCGGAAGCCACTTATTTCATCCCTTCCGCCTTCTAGTTGCATTTTATGAATCGTTTAGCATTTTTTGAATTGTTGGCATTGTTGGCATTGTTTCTCAAAATAAGTTTTTGCAA

Coding sequence (CDS)

ATGGCTGCGATATCTAATTCCTTGGTTTCAACCAAAAACCCTCAACTCCAGTTATCATCTGGATCAAATCTGAAAACTGCTGATAAACTTCTGGGGAGTGTGTCTCCCACCAGCTTGTTACTCAATCCTGGTTGGGTTGGAAAGGCGAAGCTTTCTACATCCAGGCGGCCACTTTCAGTTCAAGCTGCATATAGGTATAATCTACGGAATCGTGATGGCGGACGGTCAAGCAATGCAGGCATTTTTGTTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGATCGAAAAGAATTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAGTGCTGGCACAGAAGATAGAACAGTTGAACTCTGCGATTGATGAGGTTTCTTCTCAGCTCCGGACAGACGATCCCCCAAATGGAGTGGCCGTGAACTCTGACGAAATTGAACCTGCCATTTGA

Protein sequence

MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSVQAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI

Homology

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BLAST of Carg08613 vs. NCBI nr
Match: XP_022936063.1 (uncharacterized protein LOC111442778 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 1.7e-81
Identity = 169/176 (96.02%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV
Sbjct: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       DGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL
Sbjct: 61  QAAY------SDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI
Sbjct: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of Carg08613 vs. NCBI nr
Match: XP_023535792.1 (uncharacterized protein LOC111797119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.5 bits (789), Expect = 1.4e-80
Identity = 168/176 (95.45%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           MAAISNSLVSTKNPQLQLSS SNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV
Sbjct: 1   MAAISNSLVSTKNPQLQLSSRSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       DGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL
Sbjct: 61  QAAY------SDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI
Sbjct: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

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BLAST of Carg08613 vs. NCBI nr
Match: XP_022975295.1 (uncharacterized protein LOC111474436 [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 4.2e-80
Identity = 167/176 (94.89%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           MAAISNSLVSTKNPQL LSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV
Sbjct: 1   MAAISNSLVSTKNPQLPLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       D GRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL
Sbjct: 61  QAAY------SDSGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI
Sbjct: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

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BLAST of Carg08613 vs. NCBI nr
Match: XP_022941515.1 (uncharacterized protein LOC111446794 [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 154/176 (87.50%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           M+AISNSL+ TK PQLQLS+GSNLKTADK  GSVSPT LLLNPGWVGKAKLST RRPLSV
Sbjct: 1   MSAISNSLILTKTPQLQLSAGSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       DGGRSS+AGIF+GGFVLGGLIVGTLGCVYAPQISKALAGTDRK+LMRKL
Sbjct: 61  QAAY------SDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRT+D PNGVAVNSDE+EPAI
Sbjct: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

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BLAST of Carg08613 vs. NCBI nr
Match: XP_023521457.1 (uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 3.4e-74
Identity = 153/176 (86.93%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           M+AISNSL+ TK PQLQLS+GSNLKTADK  GSVSPT LLLNPGWVGKAKLST RRPLSV
Sbjct: 1   MSAISNSLILTKTPQLQLSAGSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       DGGRSS+AGIF+GGFVLGGL+VGTLGCVYAPQISKALAGTDRK+LMRKL
Sbjct: 61  QAAY------SDGGRSSSAGIFIGGFVLGGLVVGTLGCVYAPQISKALAGTDRKDLMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRT+D PNGVAVNSDE+EPAI
Sbjct: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

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BLAST of Carg08613 vs. TAIR10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast.)

HSP 1 Score: 154.5 bits (389), Expect = 6.3e-38
Identity = 94/175 (53.71%), Postives = 121/175 (69.14%), Query Frame = 0


Query: 1   MAAISNSLVS--TKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPL 60
           MA++S++ +S    + QL  SSG +L    + +      S  LN           ++R L
Sbjct: 1   MASLSSTSLSLPKNSHQLHPSSGFSLNPNARCVS----VSFGLNHSNKLHISAPRTKRIL 60

Query: 61  SVQAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMR 120
           ++Q+AY      RD   S + G+FVGGF+L    VG LGCVYAPQISKA+AG DRK+LMR
Sbjct: 61  TIQSAY------RDDDGSGSTGLFVGGFILXXXXVGALGCVYAPQISKAIAGADRKDLMR 120

Query: 121 KLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIE 174
           KLPKFIYDEEKALEKTRKVLA+KI QLNSAID+VSSQL+++D PNG A+++DEIE
Sbjct: 121 KLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTPNGAALSTDEIE 165

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BLAST of Carg08613 vs. TAIR10
Match: AT5G16660.1 (unknown protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-14
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 22  SNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSVQAAYRYNLRNRDGGRSSNAGI 81
           + L T  KL      + L ++       K S   R  SV A Y      RDG RS ++G 
Sbjct: 24  NGLSTTTKLSSICKTSDLTIH-------KKSNRTRKFSVSAGY------RDGSRSGSSGD 83

Query: 82  FVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQK 141
           F+ GF+LGG + G +  ++APQI +++   + +    K  +  Y +E  LEKTR+ L +K
Sbjct: 84  FIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDE-GLEKTRETLNEK 143

Query: 142 IEQLNSAIDEVSSQLR 158
           I QLNSAID VSS+LR
Sbjct: 144 IGQLNSAIDNVSSRLR 145

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BLAST of Carg08613 vs. TAIR10
Match: AT3G02900.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-11
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 52  STSRRPLSVQAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGT 111
           S     LSV A Y      R G +   +  FV GF+LG  + GTL  ++APQI +++   
Sbjct: 38  SNRSHKLSVSAGY------RGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSE 97

Query: 112 DRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLR 158
           +     +      YDE   LE+ R++L +KI QLNSAID+VSS+L+
Sbjct: 98  NEYGFKKPEQPMYYDE--GLEERREILNEKIGQLNSAIDKVSSRLK 135

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BLAST of Carg08613 vs. TrEMBL
Match: tr|A0A1S3BV81|A0A1S3BV81_CUCME (uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.1e-72
Identity = 149/176 (84.66%), Postives = 160/176 (90.91%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           M AISNSLV TKNPQLQL+ GSNLKT DK LGS+SPTSL+L+PGWVGKAKLST RRPLSV
Sbjct: 1   MTAISNSLVLTKNPQLQLTHGSNLKTVDKRLGSLSPTSLVLSPGWVGKAKLSTFRRPLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       DGGRSSNAGIF+GGFVLGG+IVGTLGCVYAPQISKA+AG DRK+LMRKL
Sbjct: 61  QAAY------SDGGRSSNAGIFIGGFVLGGIIVGTLGCVYAPQISKAIAGADRKDLMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLR +DPPNGVAVNSDE+E AI
Sbjct: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRPEDPPNGVAVNSDEVESAI 170

[Close]

BLAST of Carg08613 vs. TrEMBL
Match: tr|A0A0A0L3E6|A0A0A0L3E6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664320 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 4.0e-63
Identity = 135/176 (76.70%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           MAAISNSLV TK+PQLQL+ GSNLKT D+ LGS+SPTSL+L+PGWVG AKLSTSRR LSV
Sbjct: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY      RD GRSS  GIF+GGFVLGGLIVGTLGCVYAPQISK +AGTDRKELM+KL
Sbjct: 61  QAAY------RDDGRSS-TGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRK+LA KIEQLNSAIDEV+++ R++ P NG+A++SDE+E  I
Sbjct: 121 PKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169

[Close]

BLAST of Carg08613 vs. TrEMBL
Match: tr|A0A061FE46|A0A061FE46_THECC (Localized to the inner membrane of the chloroplast OS=Theobroma cacao OX=3641 GN=TCM_034426 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57
Identity = 126/176 (71.59%), Postives = 144/176 (81.82%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           M ++SNSLV  KN  +QLSSGS+LK AD+  GS SPT+L  N   VGK +LS SRRPL V
Sbjct: 1   MTSLSNSLVLPKNRGIQLSSGSHLKAADQSFGSASPTNLSFNSNRVGKLQLSVSRRPLIV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QA+Y       DGGR S+A IFVGGFVLGGL+VG LGCV+APQISKALAG DRK+LM++L
Sbjct: 61  QASY------SDGGRPSSASIFVGGFVLGGLVVGALGCVFAPQISKALAGADRKDLMKRL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRKVL +KI QLNSAID+VS+QLRT+D PNGVAVNSDEIE AI
Sbjct: 121 PKFIYDEEKALEKTRKVLTEKIAQLNSAIDDVSAQLRTEDAPNGVAVNSDEIEAAI 170

[Close]

BLAST of Carg08613 vs. TrEMBL
Match: tr|M5WAZ2|M5WAZ2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G007900 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.4e-54
Identity = 120/176 (68.18%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           M AI+NSL  T NP +QLSSGS LK + + LGSV+PT+L LN   +GKA+LSTS+R  +V
Sbjct: 1   MTAIANSLALTTNPHVQLSSGSPLKPSQQYLGSVAPTNLSLNSKHIGKAQLSTSKRSFTV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QA Y       DGGRS+++ IF+ GFVLGGLIVGTLG VYAPQISKALAG DRK+LMRKL
Sbjct: 61  QAGY------SDGGRSNSSSIFISGFVLGGLIVGTLGAVYAPQISKALAGADRKDLMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDE+KALEKTRKVLA+KI QLNSAID+VS QLR++D PN V V+SDE+E  I
Sbjct: 121 PKFIYDEDKALEKTRKVLAEKIAQLNSAIDDVSGQLRSEDEPNEVPVSSDEVEAVI 170

[Close]

BLAST of Carg08613 vs. TrEMBL
Match: tr|A0A1Q3D1R7|A0A1Q3D1R7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29886 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.9e-54
Identity = 122/176 (69.32%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60
           M +IS SLV T+NP +QLS  S LK  D+ LG    T+L  NP    K +LSTSRR  +V
Sbjct: 1   MTSISGSLVVTRNPGIQLSYHSPLKPLDQCLGRAIHTNLSFNPNRQRKMQLSTSRRSCTV 60

Query: 61  QAAYRYNLRNRDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKL 120
           QAAY       DGGR S AGIFVGGFVLGG+IVGTLGCVYAPQISKALAGTD+K+LMRKL
Sbjct: 61  QAAY------SDGGRPSGAGIFVGGFVLGGIIVGTLGCVYAPQISKALAGTDKKDLMRKL 120

Query: 121 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 177
           PKFIYDEEKALEKTRK+L +KI QLNSAID+VSSQLR++D PNGV VNSDE+E  I
Sbjct: 121 PKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSSQLRSEDTPNGVPVNSDEMEATI 170

The following BLAST results are available for this feature:

BLAST of Carg08613 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936063.1	1.7e-81	96.02	uncharacterized protein LOC111442778 [Cucurbita moschata]	[more]
XP_023535792.1	1.4e-80	95.45	uncharacterized protein LOC111797119 [Cucurbita pepo subsp. pepo]	[more]
XP_022975295.1	4.2e-80	94.89	uncharacterized protein LOC111474436 [Cucurbita maxima]	[more]
XP_022941515.1	2.6e-74	87.50	uncharacterized protein LOC111446794 [Cucurbita moschata]	[more]
XP_023521457.1	3.4e-74	86.93	uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08613 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G42960.1	6.3e-38	53.71	expressed protein localized to the inner membrane of the chloroplast.	[more]
AT5G16660.1	3.7e-14	38.24	unknown protein	[more]
AT3G02900.1	3.8e-11	38.68	unknown protein	[more]

BLAST of Carg08613 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08613 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BV81\|A0A1S3BV81_CUCME	2.1e-72	84.66	uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=...	[more]
tr\|A0A0A0L3E6\|A0A0A0L3E6_CUCSA	4.0e-63	76.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664320 PE=4 SV=1	[more]
tr\|A0A061FE46\|A0A061FE46_THECC	2.5e-57	71.59	Localized to the inner membrane of the chloroplast OS=Theobroma cacao OX=3641 GN...	[more]
tr\|M5WAZ2\|M5WAZ2_PRUPE	4.4e-54	68.18	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G007900 PE=4 SV=1	[more]
tr\|A0A1Q3D1R7\|A0A1Q3D1R7_CEPFO	9.9e-54	69.32	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29886 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08613-RA	Carg08613-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..176
None	No IPR available	PANTHER	PTHR34048:SF1	SUBFAMILY NOT NAMED	coord: 1..176
None	No IPR available	PANTHER	PTHR34048	FAMILY NOT NAMED	coord: 1..176

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08613	Cla023465	Watermelon (97103) v1	carwmB0104
Carg08613	Csa4G664320	Cucumber (Chinese Long) v2	carcuB0113
Carg08613	MELO3C017045	Melon (DHL92) v3.5.1	carmeB0107
Carg08613	ClCG11G018900	Watermelon (Charleston Gray)	carwcgB0102
Carg08613	CSPI04G27120	Wild cucumber (PI 183967)	carcpiB0118
Carg08613	Cucsa.272300	Cucumber (Gy14) v1	carcgyB0125
Carg08613	CmaCh01G020300	Cucurbita maxima (Rimu)	carcmaB0136
Carg08613	CmaCh09G000350	Cucurbita maxima (Rimu)	carcmaB0134
Carg08613	CmoCh01G020850	Cucurbita moschata (Rifu)	carcmoB0146
Carg08613	CmoCh09G000360	Cucurbita moschata (Rifu)	carcmoB0144
Carg08613	Cp4.1LG02g08670	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08613	Cp4.1LG06g00090	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08613	CsGy4G025430	Cucumber (Gy14) v2	carcgybB0113
Carg08613	MELO3C017045.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08613	CsaV3_4G037500	Cucumber (Chinese Long) v3	carcucB0122
Carg08613	Cla97C11G225020	Watermelon (97103) v2	carwmbB0106
Carg08613	Bhi09G002369	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08613	Carg21358	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08613	Bottle gourd (USVL1VR-Ls)	carlsiB094