Carg08600 (gene) Silver-seed gourd

Overview
NameCarg08600
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSWI/SNF complex subunit SWI3B
LocationCucurbita_argyrosperma_scaffold_057 : 104899 .. 106732 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTGCTTTCCCGCCTCGCCTGAGCCGAGCGACGGTTAGCAACTTCGTTTTGTTATTCCGATAGGCTCGCCAGAGCTTCCTTTCTCTATTACTTCCTCATCGTCGGACGCTTTGTTCGTTGTATATATCCATGGCGGCTAATTTACCGGTCCAAGATCCCCCCACGGATGCTTCTGCCAAACAACCTACGCCTTCGCCTTCCCCCACTCTTGTAACCCCTCCCGTTAAGATCGACACTCCTTCATCCGACTCCGGCAAGACCCCCGCCGCCGTTCCCGCTCCTACCCCTCGCCCCGAGGACCTCCCTCAATCCGCCTCTCCCGATCCAGTTCATCTTCCCAGCTACTCCAGTAAGTATAAATTCCTTCCTGCATTCTCTGCAACCCCTTCGGCTTCTTGTTTTTAGATCTTAACTCTTAGTTTTGTTATTTTGCTCCCTTATTTTCTCGCCCAGGATGGTTCTCCTGGAACGGCATTCACGAGTGCGAGGTTCGGTTCCTTCCGGAGTTCTTCGATTCACGGTCGCCCTCTAAAAACCCTAGGGTTTACAAGTACCTTCGAAATGCTATTGTCAAGAATTTCAGAGAATGCCCTTCCAAGAAGATCACATTTACTGATGTCCGAAAGACGCTCGTTGCCGACGTAGGATCTATTCGTAGGGTTTTCGATTTTCTCGAGGCTTGGGGTCTCGTCAATTACTCGCCGTCCGCCCTGAACAAACCGCTCAAGTGGGAGGACCGGGACTCGAAGTCTAATTCGTCCGCTTCGCACACCGGTGAGCCTGGAGGTAGTTCCGCAGATTCCGCAGCTCCTAAAGACGCTTCTAAGAGAGTATGCAGCGGTTGCAAGTCTATTTGTAGCATCGCTTGCTTTGCATGCGATAAGGTTCGTATTCACTTGCATGGTGAACGTAGTATAGTCTCGTCTATCTGTTTTCTTGTTTCCGCGAATGAGTTTGTGTTCCGTTCCATCCTCAGCGTATTCTAATTTCCAAGTATTTTCGAGGCAAGTCTTCGACTCTTTGGTATGTATTAATTCCATGATTTTTCAAGTAGTTGTAACTTTCGATCGTTGGGAGAGAGCTTGGCGTAGTTTATTAGGTCCCGAGGCGGCCGAATTAATTTATTGTAGATAGCGATGCAGCTAAAGATATTTTGGTCTTTAATTTGTCAAACGCCTTCTGACTCGGGTTTTTATCTGTTCATTTTCTTAATCTTCCTGTTTAAATTTCGCTAGAATGTTTGTTGACATATTGTGTTTTACTGGATAGGTTGTCTAACTGTTTTTGGTGATATGATGAATTTGGAACTTGGATAGACTTGTCCTTTTTAAATGGACATTAAATGAATTGATATAATTTAATATATTAGAACTAATATGCTGGTCATTGTTTTGTACAGTTTGATTTGACGCTTTGTGCGAGGTGCTATGTTCGTGGAAACTATCGAGTTGGTGTTAGTTCTTCAGATTTTCGACGTGTTGAGATCAATGATGAGACACGAACAGATTGGACTGATAAGGAGACTTTGCATCTTCTTGAAGCTTTGACGCATCATGGTGATGATTGGAAAAAGGTCGCACAACATGTTGGTGGCAGAACTGAAAGGGAATGTGTTGCCCATTTTGTGAAGCTTCCTTTGGGGGAGCAGTTTCTTGGTTATCCAGATTCCGGAAATGTTGGTGGCAGAACTGTAGTGAAGGATCATGCCAGTGCCGATCTTACATTAGAAAGTACACCTCTTACTAGTAAAAGAATCCGTCTATCTCCTCTGGCAGATGCAAGTAATCCCATAATGGCTCAGGTTAGTGTTGGTGTTAGTCATTTCTTTTAG

mRNA sequence

TTTTTTGCTTTCCCGCCTCGCCTGAGCCGAGCGACGGTTAGCAACTTCGTTTTGTTATTCCGATAGGCTCGCCAGAGCTTCCTTTCTCTATTACTTCCTCATCGTCGGACGCTTTGTTCGTTGTATATATCCATGGCGGCTAATTTACCGGTCCAAGATCCCCCCACGGATGCTTCTGCCAAACAACCTACGCCTTCGCCTTCCCCCACTCTTGTAACCCCTCCCGTTAAGATCGACACTCCTTCATCCGACTCCGGCAAGACCCCCGCCGCCGTTCCCGCTCCTACCCCTCGCCCCGAGGACCTCCCTCAATCCGCCTCTCCCGATCCAGTTCATCTTCCCAGCTACTCCAGATGGTTCTCCTGGAACGGCATTCACGAGTGCGAGGTTCGGTTCCTTCCGGAGTTCTTCGATTCACGGTCGCCCTCTAAAAACCCTAGGGTTTACAAGTACCTTCGAAATGCTATTGTCAAGAATTTCAGAGAATGCCCTTCCAAGAAGATCACATTTACTGATGTCCGAAAGACGCTCGTTGCCGACGTAGGATCTATTCGTAGGGTTTTCGATTTTCTCGAGGCTTGGGGTCTCGTCAATTACTCGCCGTCCGCCCTGAACAAACCGCTCAAGTGGGAGGACCGGGACTCGAAGTCTAATTCGTCCGCTTCGCACACCGGTGAGCCTGGAGGTAGTTCCGCAGATTCCGCAGCTCCTAAAGACGCTTCTAAGAGAGTATGCAGCGGTTGCAAGTCTATTTGTAGCATCGCTTGCTTTGCATGCGATAAGTTTGATTTGACGCTTTGTGCGAGGTGCTATGTTCGTGGAAACTATCGAGTTGGTGTTAGTTCTTCAGATTTTCGACGTGTTGAGATCAATGATGAGACACGAACAGATTGGACTGATAAGGAGACTTTGCATCTTCTTGAAGCTTTGACGCATCATGGTGATGATTGGAAAAAGGTCGCACAACATGTTGGTGGCAGAACTGAAAGGGAATGTGTTGCCCATTTTGTGAAGCTTCCTTTGGGGGAGCAGTTTCTTGGTTATCCAGATTCCGGAAATGTTGGTGGCAGAACTGTAGTGAAGGATCATGCCAGTGCCGATCTTACATTAGAAAGTACACCTCTTACTAGTAAAAGAATCCGTCTATCTCCTCTGGCAGATGCAAGTAATCCCATAATGGCTCAGGTTAGTGTTGGTGTTAGTCATTTCTTTTAG

Coding sequence (CDS)

ATGGCGGCTAATTTACCGGTCCAAGATCCCCCCACGGATGCTTCTGCCAAACAACCTACGCCTTCGCCTTCCCCCACTCTTGTAACCCCTCCCGTTAAGATCGACACTCCTTCATCCGACTCCGGCAAGACCCCCGCCGCCGTTCCCGCTCCTACCCCTCGCCCCGAGGACCTCCCTCAATCCGCCTCTCCCGATCCAGTTCATCTTCCCAGCTACTCCAGATGGTTCTCCTGGAACGGCATTCACGAGTGCGAGGTTCGGTTCCTTCCGGAGTTCTTCGATTCACGGTCGCCCTCTAAAAACCCTAGGGTTTACAAGTACCTTCGAAATGCTATTGTCAAGAATTTCAGAGAATGCCCTTCCAAGAAGATCACATTTACTGATGTCCGAAAGACGCTCGTTGCCGACGTAGGATCTATTCGTAGGGTTTTCGATTTTCTCGAGGCTTGGGGTCTCGTCAATTACTCGCCGTCCGCCCTGAACAAACCGCTCAAGTGGGAGGACCGGGACTCGAAGTCTAATTCGTCCGCTTCGCACACCGGTGAGCCTGGAGGTAGTTCCGCAGATTCCGCAGCTCCTAAAGACGCTTCTAAGAGAGTATGCAGCGGTTGCAAGTCTATTTGTAGCATCGCTTGCTTTGCATGCGATAAGTTTGATTTGACGCTTTGTGCGAGGTGCTATGTTCGTGGAAACTATCGAGTTGGTGTTAGTTCTTCAGATTTTCGACGTGTTGAGATCAATGATGAGACACGAACAGATTGGACTGATAAGGAGACTTTGCATCTTCTTGAAGCTTTGACGCATCATGGTGATGATTGGAAAAAGGTCGCACAACATGTTGGTGGCAGAACTGAAAGGGAATGTGTTGCCCATTTTGTGAAGCTTCCTTTGGGGGAGCAGTTTCTTGGTTATCCAGATTCCGGAAATGTTGGTGGCAGAACTGTAGTGAAGGATCATGCCAGTGCCGATCTTACATTAGAAAGTACACCTCTTACTAGTAAAAGAATCCGTCTATCTCCTCTGGCAGATGCAAGTAATCCCATAATGGCTCAGGTTAGTGTTGGTGTTAGTCATTTCTTTTAG

Protein sequence

MAANLPVQDPPTDASAKQPTPSPSPTLVTPPVKIDTPSSDSGKTPAAVPAPTPRPEDLPQSASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHTGEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQVSVGVSHFF
Homology
[Close]
BLAST of Carg08600 vs. NCBI nr
Match: XP_023515051.1 (SWI/SNF complex subunit SWI3B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 649.8 bits (1675), Expect = 5.4e-183
Identity = 321/353 (90.93%), Postives = 323/353 (91.50%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAANLPVQDPPTDASAKQP        VTPPVKID                     DLPQ
Sbjct: 1   MAANLPVQDPPTDASAKQPTPSPSPTLVTPPVKIDTPSSDSGKTPAAVPASTPRPEDLPQ 60

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP
Sbjct: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT
Sbjct: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240
           GEPGGSSADS+APKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD
Sbjct: 181 GEPGGSSADSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240

Query: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300
           FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ
Sbjct: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300

Query: 301 FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQVS 354
           FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQ +
Sbjct: 301 FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQAA 353

[Close]
BLAST of Carg08600 vs. NCBI nr
Match: XP_022936036.1 (SWI/SNF complex subunit SWI3B [Cucurbita moschata])

HSP 1 Score: 647.5 bits (1669), Expect = 2.7e-182
Identity = 341/353 (96.60%), Postives = 343/353 (97.17%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAANLPVQDPPTDASAK P XXXXXX VTPPVKID      XXXXXXXXXXXXXXXDLPQ
Sbjct: 1   MAANLPVQDPPTDASAKHPTXXXXXXLVTPPVKIDTPSSDSXXXXXXXXXXXXXXXDLPQ 60

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP
Sbjct: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFT+VRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT
Sbjct: 121 SKKITFTEVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240
           GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD
Sbjct: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240

Query: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300
           FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ
Sbjct: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300

Query: 301 FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQVS 354
           FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQ +
Sbjct: 301 FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQAA 353

[Close]
BLAST of Carg08600 vs. NCBI nr
Match: XP_022975356.1 (SWI/SNF complex subunit SWI3B [Cucurbita maxima])

HSP 1 Score: 646.4 bits (1666), Expect = 5.9e-182
Identity = 319/353 (90.37%), Postives = 322/353 (91.22%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAANLPVQDPPTDASAKQP        VTPPVKID                     DLPQ
Sbjct: 1   MAANLPVQDPPTDASAKQPTPSPSPTLVTPPVKIDTPSSDSGKTPAAVPASTPRPEDLPQ 60

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFF+SRSPSKNPRVYKYLRNAIVKNFRECP
Sbjct: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFNSRSPSKNPRVYKYLRNAIVKNFRECP 120

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPS LNKPLKWEDRDSKSNSSASHT
Sbjct: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSVLNKPLKWEDRDSKSNSSASHT 180

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240
           GEPGGSSADS+APKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD
Sbjct: 181 GEPGGSSADSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240

Query: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300
           FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ
Sbjct: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300

Query: 301 FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQVS 354
           FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQ +
Sbjct: 301 FLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQAA 353

[Close]
BLAST of Carg08600 vs. NCBI nr
Match: XP_008453025.2 (PREDICTED: SWI/SNF complex subunit SWI3B [Cucumis melo])

HSP 1 Score: 584.7 bits (1506), Expect = 2.1e-163
Identity = 292/357 (81.79%), Postives = 311/357 (87.11%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAAN PVQDPPTDASAKQ         VTPP+KI+                     DLPQ
Sbjct: 1   MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPDDLPQ 60

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
             SPDP+HLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRN+IVKNFRECP
Sbjct: 61  PTSPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECP 120

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFTD+RKTLVADVGSIRRVFDFLEAWGL+NYSPSAL+KPLKWEDRDSKSN+SAS+T
Sbjct: 121 SKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWEDRDSKSNASASNT 180

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVG-VSSS 240
           GEPGG SA+S+APKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVG VSSS
Sbjct: 181 GEPGGGSANSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVVSSS 240

Query: 241 DFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGE 300
           DFRRVEIND+TRTDWTDKETLHLLEALTH+GDDWKKVAQHVGGRTERECVAHFVKLPLGE
Sbjct: 241 DFRRVEINDDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAHFVKLPLGE 300

Query: 301 QFLGYPDSGNVGGR-TVVKDHASADLTLEST--PLTSKRIRLSPLADASNPIMAQVS 354
           QF GYPDS ++    TVVKDHASA+LTLEST   + +KRIRLSPLADASNPIMAQ +
Sbjct: 301 QFHGYPDSEHIDNNYTVVKDHASANLTLESTGASIPNKRIRLSPLADASNPIMAQAA 357

[Close]
BLAST of Carg08600 vs. NCBI nr
Match: XP_004145606.1 (PREDICTED: SWI/SNF complex subunit SWI3B [Cucumis sativus])

HSP 1 Score: 583.6 bits (1503), Expect = 4.7e-163
Identity = 288/358 (80.45%), Postives = 308/358 (86.03%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAAN PVQDPPTDASAKQ         VTPP+KI+                     DLPQ
Sbjct: 1   MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPEDLPQ 60

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           S SPDP+HLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRN+IVKNFRECP
Sbjct: 61  STSPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECP 120

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFTD+RKTLVADVGSIRRVFDFLEAWGL+NYSPSAL+KPLKW+DRDSKSN+SAS+T
Sbjct: 121 SKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWDDRDSKSNASASNT 180

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240
           GEPGG SA+S+APKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD
Sbjct: 181 GEPGGGSANSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240

Query: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300
           FRRVEIND+TRTDWTDKETLHLLEALTH+GDDWKKVAQHVGGRTERECVA FVKLPLGEQ
Sbjct: 241 FRRVEINDDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAQFVKLPLGEQ 300

Query: 301 FLGYPDSGNVGGRTVVKDHASADLTLES-----TPLTSKRIRLSPLADASNPIMAQVS 354
           F GYPDS ++     VKD ASA+LTLES     T + +KRIRLSPLADASNPIMAQ +
Sbjct: 301 FHGYPDSEHIDNNCTVKDEASANLTLESTGKIGTSIPNKRIRLSPLADASNPIMAQAA 358

[Close]
BLAST of Carg08600 vs. TAIR10
Match: AT2G33610.1 (switch subunit 3)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-96
Identity = 176/303 (58.09%), Postives = 230/303 (75.91%), Query Frame = 0 

Query: 58  LPQSASP-DPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNF 117
           LP S+S  D +H+PSYS WFSW  I++CEVR LPEFFDSRS SKNP+ Y YLRN+I+K +
Sbjct: 38  LPSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQY 97

Query: 118 RECPSKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSS 177
           R+   +KI+FTDVR+TLV+DV SIRRVFDFL++WGL+NY+ SA  KPLKWE++++   S+
Sbjct: 98  RDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEA-GKSA 157

Query: 178 ASHTGEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGV 237
                EP      +   K+ +KR C+GCK+ICSIACFACDK+DLTLCARCYVR NYRVG+
Sbjct: 158 GDXXXEP------ATTVKETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGI 217

Query: 238 SSSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLP 297
           +SS+F+RVEI++E++ +W+DKE L LLEA+ H+GDDWKKVA HV GRTE++CV+ FVKLP
Sbjct: 218 NSSEFKRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLP 277

Query: 298 LGEQFLGYPDSGNVGGRTVVKDHASADLTLESTPL------TSKRIRLSPLADASNPIMA 354
            GEQF+   DS +  G  +      +D+  ES  +       +KRI+L+PLADASNPIMA
Sbjct: 278 FGEQFVKESDSED--GLEMFDQIKDSDIP-ESEGIDKDGSSPNKRIKLTPLADASNPIMA 330

[Close]
BLAST of Carg08600 vs. TAIR10
Match: AT2G47620.1 (SWITCH/sucrose nonfermenting 3A)

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-35
Identity = 89/278 (32.01%), Postives = 136/278 (48.92%), Query Frame = 0 

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           SA  +   +P+ S WF W+ IHE E R   EFF   S ++ P+VYK  R+ I+  FRE  
Sbjct: 7   SAEIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDT 66

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
            +++TFT VRK LV DV  +++VF FLE WGL+N+S S     LK  D     +++    
Sbjct: 67  CRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSS-----LKKNDHLLSVDNAKIEQ 126

Query: 181 GEPGG--------SSADSAAPKDASKR---------------------------VCSGCK 240
           G P G        S     AP    +R                           VC+ C 
Sbjct: 127 GTPAGIRVTATPNSLRPITAPPLVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCG 186

Query: 241 SICSIACFACDKFDLTLCARCYVRGNYRVGVSSSDFRRVEINDETRTDWTDKETLHLLEA 300
             C    +  +K  + +C +C+  GNY    ++ DF+   I +     WT++E L LLE+
Sbjct: 187 ERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKL--IGNSAAAVWTEEEILLLLES 246

Query: 301 LTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFLG 304
           +  HGDDW+ ++Q V  ++  +C++  ++LP GE  +G
Sbjct: 247 VLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMG 277

[Close]
BLAST of Carg08600 vs. TAIR10
Match: AT1G21700.1 (SWITCH/sucrose nonfermenting 3C)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-31
Identity = 103/340 (30.29%), Postives = 156/340 (45.88%), Query Frame = 0 

Query: 65  DPVH-LPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKK 124
           D VH LP +S WF+ N +   E + +P+FF  +SP+  P  Y   RNAIV  + E P K 
Sbjct: 173 DLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKT 232

Query: 125 ITFTDVRKTL-VADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHTGE 184
           +T +D +  +   D+    RVF FL+ WG++NY  +A + P    D       +      
Sbjct: 233 LTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNV 292

Query: 185 PGG--SSADSAAPKDASK------RVCSGCKS---------------ICSIACFACD--- 244
           P    +S DS    D          V S   S               +C   C  C    
Sbjct: 293 PSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREHLCDSHCNHCSRPL 352

Query: 245 ---------KFDLTLCARCYVRGNYRVGVSSSDFRRVE----INDETRTDWTDKETLHLL 304
                    K D+ LC  C+  G + VG S  DF RV+      D+   +WTD+ETL LL
Sbjct: 353 PTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLL 412

Query: 305 EALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFLGYPDSGNVGGRTVVK------ 354
           EA+  + ++W ++A HVG +++ +C+ HF++LP+ +   G  D+  V G T  +      
Sbjct: 413 EAVELYNENWVQIADHVGSKSKAQCILHFLRLPVED---GLLDNVEVSGVTNTENPTNGY 472

[Close]
BLAST of Carg08600 vs. TAIR10
Match: AT4G34430.4 (DNA-binding family protein)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-29
Identity = 83/275 (30.18%), Postives = 133/275 (48.36%), Query Frame = 0 

Query: 69  LPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKKITFTD 128
           +P++  WFSW  IH  E R LP FF+ +   +   VY+ +RN I+  F   P+ +I   D
Sbjct: 147 VPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKD 206

Query: 129 VRKTLVADVGSIRRVFDFLEAWGLVNYSP--------------------SALNKPLKWED 188
           + +  V D  + + V +FL+ WGL+N+ P                    S LN   +++ 
Sbjct: 207 LTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQV 266

Query: 189 RDS------KSNSSASHTGEPGGSSADSAAPKDASKRV-------CSGCKSICSIACFAC 248
            ++      K   +A  T  P G   D  A  +  K+        C+ C + CS   + C
Sbjct: 267 DEACPPLVHKPRFTAQAT--PSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHC 326

Query: 249 DK-FDLTLCARCYVRGNYRVGVSSSDFRRVEINDETRT---DWTDKETLHLLEALTHHGD 307
            K  D  LC  C+  G +   +SSSDF  +E  +        WTD+ETL LLEAL    +
Sbjct: 327 PKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKE 386

[Close]
BLAST of Carg08600 vs. TAIR10
Match: AT4G16420.1 (homolog of yeast ADA2 2B)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06
Identity = 33/108 (30.56%), Postives = 49/108 (45.37%), Query Frame = 0 

Query: 210 IACFACDKFDLTLCARCYVRGNYRVGVSSSDFRRVEIN---DETRTDWTDKETLHLLEAL 269
           I C  C  FD  LC  C   G            RV  N        DW+  + + LLE L
Sbjct: 60  IKCAVCPDFD--LCIECMSVGAEITPHKCDHPYRVMGNLTFPLICPDWSADDEMLLLEGL 119

Query: 270 THHG-DDWKKVAQHVGGRTERECVAHFVKLPLGEQFLGYPDSGNVGGR 314
             +G  +W +VA+HVG +++ +C+ H+  + L   F   PD  +V G+
Sbjct: 120 EIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFFPLPDMSHVAGK 165

[Close]
BLAST of Carg08600 vs. Swiss-Prot
Match: sp|Q84JG2|SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana OX=3702 GN=SWI3B PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-95
Identity = 176/303 (58.09%), Postives = 230/303 (75.91%), Query Frame = 0 

Query: 58  LPQSASP-DPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNF 117
           LP S+S  D +H+PSYS WFSW  I++CEVR LPEFFDSRS SKNP+ Y YLRN+I+K +
Sbjct: 38  LPSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQY 97

Query: 118 RECPSKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSS 177
           R+   +KI+FTDVR+TLV+DV SIRRVFDFL++WGL+NY+ SA  KPLKWE++++   S+
Sbjct: 98  RDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEA-GKSA 157

Query: 178 ASHTGEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGV 237
                EP      +   K+ +KR C+GCK+ICSIACFACDK+DLTLCARCYVR NYRVG+
Sbjct: 158 GDXXXEP------ATTVKETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGI 217

Query: 238 SSSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLP 297
           +SS+F+RVEI++E++ +W+DKE L LLEA+ H+GDDWKKVA HV GRTE++CV+ FVKLP
Sbjct: 218 NSSEFKRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLP 277

Query: 298 LGEQFLGYPDSGNVGGRTVVKDHASADLTLESTPL------TSKRIRLSPLADASNPIMA 354
            GEQF+   DS +  G  +      +D+  ES  +       +KRI+L+PLADASNPIMA
Sbjct: 278 FGEQFVKESDSED--GLEMFDQIKDSDIP-ESEGIDKDGSSPNKRIKLTPLADASNPIMA 330

[Close]
BLAST of Carg08600 vs. Swiss-Prot
Match: sp|Q8W475|SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana OX=3702 GN=SWI3A PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.2e-34
Identity = 89/278 (32.01%), Postives = 136/278 (48.92%), Query Frame = 0 

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           SA  +   +P+ S WF W+ IHE E R   EFF   S ++ P+VYK  R+ I+  FRE  
Sbjct: 7   SAEIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDT 66

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
            +++TFT VRK LV DV  +++VF FLE WGL+N+S S     LK  D     +++    
Sbjct: 67  CRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSS-----LKKNDHLLSVDNAKIEQ 126

Query: 181 GEPGG--------SSADSAAPKDASKR---------------------------VCSGCK 240
           G P G        S     AP    +R                           VC+ C 
Sbjct: 127 GTPAGIRVTATPNSLRPITAPPLVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCG 186

Query: 241 SICSIACFACDKFDLTLCARCYVRGNYRVGVSSSDFRRVEINDETRTDWTDKETLHLLEA 300
             C    +  +K  + +C +C+  GNY    ++ DF+   I +     WT++E L LLE+
Sbjct: 187 ERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKL--IGNSAAAVWTEEEILLLLES 246

Query: 301 LTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFLG 304
           +  HGDDW+ ++Q V  ++  +C++  ++LP GE  +G
Sbjct: 247 VLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMG 277

[Close]
BLAST of Carg08600 vs. Swiss-Prot
Match: sp|O14470|SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr2 PE=1 SV=3)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-32
Identity = 89/283 (31.45%), Postives = 142/283 (50.18%), Query Frame = 0 

Query: 66  PVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKKIT 125
           P+ +PSY+ WF  + IH+ E R  PEFF+ +SP K P +YK  R+ ++ ++R  P++ +T
Sbjct: 17  PIIVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLT 76

Query: 126 FTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT----- 185
            T  R+ LV DV +I RV  FLE WGL+NY      +P       S    + S+T     
Sbjct: 77  VTACRRNLVGDVCAIIRVHAFLEQWGLINYQIDPETRPAFRLPPISGHVQAISNTPIVTQ 136

Query: 186 ---------GEPGGSSA------------------DSAAPKDASK---------RVCSGC 245
                       GGSS+                  +  +PK+  +         +VC  C
Sbjct: 137 EMLAQHPPPSTVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDKVPRVDKVCFTC 196

Query: 246 KSICSIACF---ACDKFDLTLCARCYVRGNYRVGVSSSDF---RRVEINDETRTDWTDKE 302
              CS   +      K+D  +C  CY +G +    +SSDF     ++ N +    W+++E
Sbjct: 197 GVNCSQTWYHNLKNKKYD--ICPNCYKQGRFSSSFNSSDFLCMDAIDFNHDEEKPWSNQE 256

[Close]
BLAST of Carg08600 vs. Swiss-Prot
Match: sp|Q9XI07|SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-30
Identity = 103/340 (30.29%), Postives = 156/340 (45.88%), Query Frame = 0 

Query: 65  DPVH-LPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKK 124
           D VH LP +S WF+ N +   E + +P+FF  +SP+  P  Y   RNAIV  + E P K 
Sbjct: 173 DLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKT 232

Query: 125 ITFTDVRKTL-VADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHTGE 184
           +T +D +  +   D+    RVF FL+ WG++NY  +A + P    D       +      
Sbjct: 233 LTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNV 292

Query: 185 PGG--SSADSAAPKDASK------RVCSGCKS---------------ICSIACFACD--- 244
           P    +S DS    D          V S   S               +C   C  C    
Sbjct: 293 PSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREHLCDSHCNHCSRPL 352

Query: 245 ---------KFDLTLCARCYVRGNYRVGVSSSDFRRVE----INDETRTDWTDKETLHLL 304
                    K D+ LC  C+  G + VG S  DF RV+      D+   +WTD+ETL LL
Sbjct: 353 PTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLL 412

Query: 305 EALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFLGYPDSGNVGGRTVVK------ 354
           EA+  + ++W ++A HVG +++ +C+ HF++LP+ +   G  D+  V G T  +      
Sbjct: 413 EAVELYNENWVQIADHVGSKSKAQCILHFLRLPVED---GLLDNVEVSGVTNTENPTNGY 472

[Close]
BLAST of Carg08600 vs. Swiss-Prot
Match: sp|Q92922|SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-28
Identity = 82/251 (32.67%), Postives = 121/251 (48.21%), Query Frame = 0 

Query: 69  LPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKKITFTD 128
           +PSY+ WF +N IH  E R LPEFF+ ++ SK P +Y   RN ++  +R  P + +T T 
Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 510

Query: 129 VRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWED---------RDSKSNSSASH 188
            R+ L  DV ++ RV  FLE WGLVNY     ++P+              D+ S     H
Sbjct: 511 CRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLH 570

Query: 189 TGEPGGSSAD---SAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGV 248
              P   +A    +   K+  K V               D  +  L    Y +       
Sbjct: 571 LRSPQVPAAQQMLNFPEKNKEKPV---------------DLQNFGLRTDIYSKKTLAKSK 630

Query: 249 SSSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLP 308
            +S  R          +WT++ETL LLEAL  + DDW KV++HVG RT+ EC+ HF++LP
Sbjct: 631 GASAGR----------EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 676

[Close]
BLAST of Carg08600 vs. TrEMBL
Match: tr|A0A1S3BW08|A0A1S3BW08_CUCME (SWI/SNF complex subunit SWI3B OS=Cucumis melo OX=3656 GN=LOC103493854 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 1.4e-163
Identity = 292/357 (81.79%), Postives = 311/357 (87.11%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAAN PVQDPPTDASAKQ         VTPP+KI+                     DLPQ
Sbjct: 1   MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPDDLPQ 60

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
             SPDP+HLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRN+IVKNFRECP
Sbjct: 61  PTSPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECP 120

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFTD+RKTLVADVGSIRRVFDFLEAWGL+NYSPSAL+KPLKWEDRDSKSN+SAS+T
Sbjct: 121 SKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWEDRDSKSNASASNT 180

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVG-VSSS 240
           GEPGG SA+S+APKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVG VSSS
Sbjct: 181 GEPGGGSANSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVVSSS 240

Query: 241 DFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGE 300
           DFRRVEIND+TRTDWTDKETLHLLEALTH+GDDWKKVAQHVGGRTERECVAHFVKLPLGE
Sbjct: 241 DFRRVEINDDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAHFVKLPLGE 300

Query: 301 QFLGYPDSGNVGGR-TVVKDHASADLTLEST--PLTSKRIRLSPLADASNPIMAQVS 354
           QF GYPDS ++    TVVKDHASA+LTLEST   + +KRIRLSPLADASNPIMAQ +
Sbjct: 301 QFHGYPDSEHIDNNYTVVKDHASANLTLESTGASIPNKRIRLSPLADASNPIMAQAA 357

[Close]
BLAST of Carg08600 vs. TrEMBL
Match: tr|A0A0A0L3F9|A0A0A0L3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664510 PE=4 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 3.1e-163
Identity = 288/358 (80.45%), Postives = 308/358 (86.03%), Query Frame = 0 

Query: 1   MAANLPVQDPPTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXDLPQ 60
           MAAN PVQDPPTDASAKQ         VTPP+KI+                     DLPQ
Sbjct: 63  MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPEDLPQ 122

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           S SPDP+HLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRN+IVKNFRECP
Sbjct: 123 STSPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECP 182

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           SKKITFTD+RKTLVADVGSIRRVFDFLEAWGL+NYSPSAL+KPLKW+DRDSKSN+SAS+T
Sbjct: 183 SKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWDDRDSKSNASASNT 242

Query: 181 GEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240
           GEPGG SA+S+APKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD
Sbjct: 243 GEPGGGSANSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 302

Query: 241 FRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQ 300
           FRRVEIND+TRTDWTDKETLHLLEALTH+GDDWKKVAQHVGGRTERECVA FVKLPLGEQ
Sbjct: 303 FRRVEINDDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAQFVKLPLGEQ 362

Query: 301 FLGYPDSGNVGGRTVVKDHASADLTLES-----TPLTSKRIRLSPLADASNPIMAQVS 354
           F GYPDS ++     VKD ASA+LTLES     T + +KRIRLSPLADASNPIMAQ +
Sbjct: 363 FHGYPDSEHIDNNCTVKDEASANLTLESTGKIGTSIPNKRIRLSPLADASNPIMAQAA 420

[Close]
BLAST of Carg08600 vs. TrEMBL
Match: tr|A0A2C9TZ75|A0A2C9TZ75_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G001900 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 5.2e-118
Identity = 211/297 (71.04%), Postives = 246/297 (82.83%), Query Frame = 0 

Query: 61  SASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECP 120
           S   D VH+PSYSRWFSWN IHECEVRFLPEFFDSRSPSKNPRVY Y RN+I+K +R  P
Sbjct: 56  SPDADIVHIPSYSRWFSWNSIHECEVRFLPEFFDSRSPSKNPRVYMYYRNSIIKYYRRNP 115

Query: 121 SKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHT 180
           S KITFT++RKTLV DVGSIRRVFDFLEAWGL+NYSPSALNKPLKWED+DSKS S +S  
Sbjct: 116 SAKITFTEIRKTLVGDVGSIRRVFDFLEAWGLINYSPSALNKPLKWEDKDSKSTSQSSAD 175

Query: 181 GEPGGSSADSAAPK-DASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSS 240
           G  GG+SADS  PK D SKR+CSGC+S+CSIACF CDK+DLTLCARCYVRGNYRVGVSSS
Sbjct: 176 G--GGTSADSTPPKRDTSKRLCSGCQSVCSIACFVCDKYDLTLCARCYVRGNYRVGVSSS 235

Query: 241 DFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGE 300
           DFRRVEI++E RT+WT+KETL LLEA+TH+GDDWKKVA HV GR+E++CVAHF+KLP GE
Sbjct: 236 DFRRVEISEEIRTEWTEKETLQLLEAVTHYGDDWKKVALHVPGRSEKDCVAHFIKLPFGE 295

Query: 301 QFLGYPDSGNVGGR-TVVKDHASADLTLESTPLTS--KRIRLSPLADASNPIMAQVS 354
           +F GY + G +  +   +KD   ++   E    +S  KR+RL+PLADASNPIM Q +
Sbjct: 296 EFAGYTNLGELDNKYDQIKDSTDSENGSEGIGSSSANKRMRLTPLADASNPIMGQAA 350

[Close]
BLAST of Carg08600 vs. TrEMBL
Match: tr|D7UDF2|D7UDF2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00670 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 4.4e-117
Identity = 214/359 (59.61%), Postives = 270/359 (75.21%), Query Frame = 0 

Query: 1   MAANLPVQDP---PTDASAKQPXXXXXXXXVTPPVKIDXXXXXXXXXXXXXXXXXXXXXD 60
           MAA  P++DP    T+   +QP        + P VK +                      
Sbjct: 1   MAAQSPIKDPIGASTETLTQQP---DSSSSIIPTVKSEIPVAASASPSVGI--------- 60

Query: 61  LPQSASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFR 120
           +P+++ P+ +++PSYSRWFSWN +HECEVRFLPEFFD+RSPSKNPRVYKY RN+I+ +FR
Sbjct: 61  VPRASEPETINIPSYSRWFSWNNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFR 120

Query: 121 ECPSKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSA 180
           + PS+K+TFTDVRK LV DVGSIRRVFDFLEAWGL+NYS SAL +PLKWE++D+KS  ++
Sbjct: 121 QNPSRKLTFTDVRKILVGDVGSIRRVFDFLEAWGLINYSGSALKQPLKWEEKDNKSGGAS 180

Query: 181 SHTGEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVS 240
           SHTG+ GG + +S  PK   +R CSGCKS+CSIACFACDKFDLTLCARCYVRGNYRVGV+
Sbjct: 181 SHTGDAGGGAVES-IPK---RRWCSGCKSLCSIACFACDKFDLTLCARCYVRGNYRVGVN 240

Query: 241 SSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPL 300
           SSDFRRVEI+++T+  WTDKETLHLLEA+ H+GDDWKKVA+HVGGR E+ECV HF+KL  
Sbjct: 241 SSDFRRVEISEDTKAGWTDKETLHLLEAVLHYGDDWKKVAEHVGGRNEKECVTHFIKLSF 300

Query: 301 GEQFLGYPDSGNVGGR-TVVKDHASADLTLES--TPLTSKRIRLSPLADASNPIMAQVS 354
           GEQ+LG+  SG+V  + +  KD + A    E+  T   SK++RL+PL+DASNPIMAQ +
Sbjct: 301 GEQYLGHTSSGDVDNKFSQAKDQSDAGFGQENIGTSSASKKMRLTPLSDASNPIMAQAA 343

[Close]
BLAST of Carg08600 vs. TrEMBL
Match: tr|A0A067KP50|A0A067KP50_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08034 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.3e-113
Identity = 205/299 (68.56%), Postives = 243/299 (81.27%), Query Frame = 0 

Query: 59  PQSASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRE 118
           P S   D V +PSYSRWFSWN IHECEVRFLPEFFDSRSPSKNP+ Y Y RN+I+K+FR 
Sbjct: 62  PPSPDADVVQIPSYSRWFSWNSIHECEVRFLPEFFDSRSPSKNPKNYMYYRNSIIKHFRH 121

Query: 119 CPSKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSAS 178
            PS K+TFT+VRKTLV DVGSIRRVFDFLEAWGL+NYSPSALNKPLKWED+DSKS     
Sbjct: 122 NPSGKLTFTEVRKTLVGDVGSIRRVFDFLEAWGLINYSPSALNKPLKWEDKDSKSTLQGG 181

Query: 179 HTGEPGGSSADSAAPK-DASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVS 238
             G  GGS ADS  PK D+SKR+CSGC+S+C+IACF CDK+DLTLCARCYVRGNYRVGVS
Sbjct: 182 ADG--GGSLADSTPPKRDSSKRLCSGCQSVCTIACFVCDKYDLTLCARCYVRGNYRVGVS 241

Query: 239 SSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPL 298
            SDFRRVEI++E RT+WT+KETL LLEA+TH+GD+WKKVA HV GR+E++CV HF+KLP 
Sbjct: 242 CSDFRRVEISEEIRTEWTEKETLQLLEAVTHYGDEWKKVALHVPGRSEKDCVTHFLKLPF 301

Query: 299 GEQFLGYPDSGNVGGR-TVVKDHASADLTLESTPLTS--KRIRLSPLADASNPIMAQVS 354
           GE+F GY + G    +   +K  +++D   ES   +S  KR+RL+PLADASNPIM+Q +
Sbjct: 302 GEEFSGYAELGEPCSKYDQIKSCSNSDCGSESIGSSSACKRMRLTPLADASNPIMSQAA 358

The following BLAST results are available for this feature:
BLAST of Carg08600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023515051.15.4e-18390.93SWI/SNF complex subunit SWI3B [Cucurbita pepo subsp. pepo][more]
XP_022936036.12.7e-18296.60SWI/SNF complex subunit SWI3B [Cucurbita moschata][more]
XP_022975356.15.9e-18290.37SWI/SNF complex subunit SWI3B [Cucurbita maxima][more]
XP_008453025.22.1e-16381.79PREDICTED: SWI/SNF complex subunit SWI3B [Cucumis melo][more]
XP_004145606.14.7e-16380.45PREDICTED: SWI/SNF complex subunit SWI3B [Cucumis sativus][more]
BLAST of Carg08600 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33610.11.2e-9658.09switch subunit 3[more]
AT2G47620.14.6e-3532.01SWITCH/sucrose nonfermenting 3A[more]
AT1G21700.11.8e-3130.29SWITCH/sucrose nonfermenting 3C[more]
AT4G34430.41.3e-2930.18DNA-binding family protein[more]
AT4G16420.12.0e-0630.56homolog of yeast ADA2 2B[more]
BLAST of Carg08600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84JG2|SWI3B_ARATH2.2e-9558.09SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana OX=3702 GN=SWI3B PE=1 SV=1[more]
sp|Q8W475|SWI3A_ARATH8.2e-3432.01SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana OX=3702 GN=SWI3A PE=1 SV=1[more]
sp|O14470|SSR2_SCHPO1.2e-3231.45SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 ... [more]
sp|Q9XI07|SWI3C_ARATH3.2e-3030.29SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1[more]
sp|Q92922|SMRC1_HUMAN1.0e-2832.67SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3[more]
BLAST of Carg08600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BW08|A0A1S3BW08_CUCME1.4e-16381.79SWI/SNF complex subunit SWI3B OS=Cucumis melo OX=3656 GN=LOC103493854 PE=4 SV=1[more]
tr|A0A0A0L3F9|A0A0A0L3F9_CUCSA3.1e-16380.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664510 PE=4 SV=1[more]
tr|A0A2C9TZ75|A0A2C9TZ75_MANES5.2e-11871.04Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G001900 PE=4 SV=... [more]
tr|D7UDF2|D7UDF2_VITVI4.4e-11759.61Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00670 PE=4 SV=... [more]
tr|A0A067KP50|A0A067KP50_JATCU1.3e-11368.56Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08034 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017884SANT_dom
IPR007526SWIRM
IPR036388WH-like_DNA-bd_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08600-RACarg08600-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 250..298
e-value: 8.0E-10
score: 48.6
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 251..295
e-value: 5.0E-12
score: 45.7
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 254..295
e-value: 1.42978E-8
score: 49.4962
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 249..299
e-value: 6.5E-20
score: 72.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..193
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 12..353
NoneNo IPR availablePANTHERPTHR12802:SF44SWI/SNF COMPLEX SUBUNIT SWI3Bcoord: 12..353
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3DG3DSA:1.10.10.10coord: 73..159
e-value: 7.0E-31
score: 108.1
IPR007526SWIRM domainPFAMPF04433SWIRMcoord: 70..155
e-value: 1.1E-24
score: 86.5
IPR007526SWIRM domainPROSITEPS50934SWIRMcoord: 67..164
score: 24.64
IPR017884SANT domainPROSITEPS51293SANTcoord: 249..300
score: 19.303
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 251..299
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 66..168