Carg08476 (gene) Silver-seed gourd

Overview
NameCarg08476
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionrubredoxin family protein
LocationCucurbita_argyrosperma_scaffold_022 : 523577 .. 525558 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCCACCCACCAATCTCCCCATCTCCACAAAAATGTCATCGGCCATAGTCGCAGGCTCCTCCGCCGCCTTCGCCAGAACCTCCATCGGAGCCCCACCCTTTCCAGCTCCAAACCCATCTCTGTCTCTTCAGGTATATCATAACCTCAAATCCCAATTCATCGCTCTGCCTTTTGATTGACTGTTTTTGTTGGTGTTCTTCAGAAAAGTGCTTTCCAAGGGGTGTCCGTACAGGAGGCCAAGAAGGGGGTCTCGCATTGGTTCGTGGCTGAGAATGGAGCGCCCAGAGGGAAGACATGGAAGGGGCTTGAAATTAAGGCGGCTAAAACGGCTGGTGCTTCCAAGACGATTGAGGTTGAAGTTGATAAGCCATTGGGGCTCACTTTAGGCCAGAAACCTGGCGGTGGGGTTGTCATCACTGTGAGTTCTTTCTCTGATCCTGTATTGCTATTTCATTGCCATTTTTGAGTGAAATATTGAGAACAAGTTTAAGATGAGTATTAATTATGTATCTCTAGGCGTGTAGAATGGCTTTTGATCTTCATTTTTAAGTTTTTTAATATATTCAAAGCAAAACACATACATAATCTTGATAGTTTACGACGAACGTATTGTTGAGGATTGTTGAGAGAGAGTCCCATATTGGCTAATTTAGAGAATGATCATGTGTTTATAATTAAGGAATACATCTATGTTGGTATAAAGCCTTTTGAGAAAGTCCAAAGCAAAACCACGAGAGCTTATACTCGAAGTGGACAATATCATACCATTGTGGTGGAGAGTCGTGATTCCCAACATGGTATTAGAGTCATGCCACAATGTCAATAGAATTCTCTAGTGTCAAACAAAGGAGAGACTGTTTGAGGGTTCCACAGGCCTCAGGGGAGGCTCTATAGTGTACTTTGTTCGAGAAGAGGATTGTTGGGAGGGAGGCTCACATTGGCGAGCTTATGCTCGAAGTGGACAATATCATACCATTGTGGAAAGTCGTAACTCCTAACACGTATTAAAAACTTTAAAATTCGGGACTAAACTTGCAATTTAACCTTGTAAAATGTTGCACACTCTCTGTAGTAACATAATCTTTGTGGGTATGTTTTGTAATTGAGTTAATTTTTGGGTATTAATGTTGGGTTAGGGAGTGGATGGGGGAGGAAATGCAGCAAAATCAGGGCTAAAGGCAGGAGACCAAGTTCTATACACTAGCAGCTTCTTTGGTGATGAATTATGGCCTGCAGACAAGCTGGGTTTTACCAAAACTGCCATTCAAGCCAAGCCTGATTCTGTCTACTTTGTCGTTAGCAGGTTCTTTAATTTCCTTTCTGAAAGTTTAAGGATAAGAATATGATTTGAACTTAACTTGTAAAGTTTTATGATATAGAGGTGCTGAGGTCGATGTTAAACGTCTCCCGAAGCGACCTGCACCGCCTCGCTTTGGAAGAAAACTAACCGAAGCACAAAAGGTAAGCGTTACTTAGCCATCACAATGTTACGTTGTGTTAGGTATATATCAAGAACATGTCTTGATGGCATTGCATTGCGTTGTTGTGTAGGCTAAAGCGACTCATATATGTCTCGATTGTGGATACATTTACACTTTATCGAAACCTTTCGATGAGCAGGTATGTTCATCTCTCGTACCTCTCCAACTCTATGGTATGACTTTTTAGTCGAGTCGGACAAGCATTGATTTTAGATTGGGTTAAGTTGGTTTGAACCTGTCGTTAAATTAGCGACGTGGATCGAGTATAATTTTTAAGCACGGTTTGAAATGCGTAGCTCTAAATGGGTAGTGTTTTGGATATGGTGCAGGCTGATGGGTATGTATGCCCTCAATGTAGAGCGCCGAAGAAGAGGTTTGCTAGATATGATGTGAACACAGGGAAGGCAGTAGGCGGAGGTTTGCCGCCAATTGGTGTCATTGCTGGCTTGGTTGCTGGTCTTGGTGCTGTTGGAGCATTGCTTGTTTATGGCCTTCAGTGA

mRNA sequence

ACGCCACCCACCAATCTCCCCATCTCCACAAAAATGTCATCGGCCATAGTCGCAGGCTCCTCCGCCGCCTTCGCCAGAACCTCCATCGGAGCCCCACCCTTTCCAGCTCCAAACCCATCTCTGTCTCTTCAGAAAAGTGCTTTCCAAGGGGTGTCCGTACAGGAGGCCAAGAAGGGGGTCTCGCATTGGTTCGTGGCTGAGAATGGAGCGCCCAGAGGGAAGACATGGAAGGGGCTTGAAATTAAGGCGGCTAAAACGGCTGGTGCTTCCAAGACGATTGAGGTTGAAGTTGATAAGCCATTGGGGCTCACTTTAGGCCAGAAACCTGGCGGTGGGGTTGTCATCACTGGAGTGGATGGGGGAGGAAATGCAGCAAAATCAGGGCTAAAGGCAGGAGACCAAGTTCTATACACTAGCAGCTTCTTTGGTGATGAATTATGGCCTGCAGACAAGCTGGGTTTTACCAAAACTGCCATTCAAGCCAAGCCTGATTCTGTCTACTTTGTCGTTAGCAGAGGTGCTGAGGTCGATGTTAAACGTCTCCCGAAGCGACCTGCACCGCCTCGCTTTGGAAGAAAACTAACCGAAGCACAAAAGGCTAAAGCGACTCATATATGTCTCGATTGTGGATACATTTACACTTTATCGAAACCTTTCGATGAGCAGGCTGATGGGTATGTATGCCCTCAATGTAGAGCGCCGAAGAAGAGGTTTGCTAGATATGATGTGAACACAGGGAAGGCAGTAGGCGGAGGTTTGCCGCCAATTGGTGTCATTGCTGGCTTGGTTGCTGGTCTTGGTGCTGTTGGAGCATTGCTTGTTTATGGCCTTCAGTGA

Coding sequence (CDS)

ATGTCATCGGCCATAGTCGCAGGCTCCTCCGCCGCCTTCGCCAGAACCTCCATCGGAGCCCCACCCTTTCCAGCTCCAAACCCATCTCTGTCTCTTCAGAAAAGTGCTTTCCAAGGGGTGTCCGTACAGGAGGCCAAGAAGGGGGTCTCGCATTGGTTCGTGGCTGAGAATGGAGCGCCCAGAGGGAAGACATGGAAGGGGCTTGAAATTAAGGCGGCTAAAACGGCTGGTGCTTCCAAGACGATTGAGGTTGAAGTTGATAAGCCATTGGGGCTCACTTTAGGCCAGAAACCTGGCGGTGGGGTTGTCATCACTGGAGTGGATGGGGGAGGAAATGCAGCAAAATCAGGGCTAAAGGCAGGAGACCAAGTTCTATACACTAGCAGCTTCTTTGGTGATGAATTATGGCCTGCAGACAAGCTGGGTTTTACCAAAACTGCCATTCAAGCCAAGCCTGATTCTGTCTACTTTGTCGTTAGCAGAGGTGCTGAGGTCGATGTTAAACGTCTCCCGAAGCGACCTGCACCGCCTCGCTTTGGAAGAAAACTAACCGAAGCACAAAAGGCTAAAGCGACTCATATATGTCTCGATTGTGGATACATTTACACTTTATCGAAACCTTTCGATGAGCAGGCTGATGGGTATGTATGCCCTCAATGTAGAGCGCCGAAGAAGAGGTTTGCTAGATATGATGTGAACACAGGGAAGGCAGTAGGCGGAGGTTTGCCGCCAATTGGTGTCATTGCTGGCTTGGTTGCTGGTCTTGGTGCTGTTGGAGCATTGCTTGTTTATGGCCTTCAGTGA

Protein sequence

MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVNTGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ
Homology
[Close]
BLAST of Carg08476 vs. NCBI nr
Match: XP_022958499.1 (uncharacterized protein LOC111459708 [Cucurbita moschata] >XP_023532687.1 uncharacterized protein LOC111794781 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 527.3 bits (1357), Expect = 3.0e-146
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0 

Query: 1   MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAP 60
           MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAP
Sbjct: 1   MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAP 60

Query: 61  RGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKA 120
           RGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKA
Sbjct: 61  RGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKA 120

Query: 121 GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFG 180
           GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFG
Sbjct: 121 GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFG 180

Query: 181 RKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVNTGKAVGG 240
           RKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVNTGKAVGG
Sbjct: 181 RKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVNTGKAVGG 240

Query: 241 GLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           GLPPIGVIAGLVAGLGAVGALLVYGLQ
Sbjct: 241 GLPPIGVIAGLVAGLGAVGALLVYGLQ 267

[Close]
BLAST of Carg08476 vs. NCBI nr
Match: XP_022995246.1 (uncharacterized protein LOC111490851 [Cucurbita maxima])

HSP 1 Score: 523.9 bits (1348), Expect = 3.3e-145
Identity = 265/267 (99.25%), Postives = 266/267 (99.63%), Query Frame = 0 

Query: 1   MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAP 60
           MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAP
Sbjct: 1   MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWFVAENGAP 60

Query: 61  RGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKA 120
           RGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKA
Sbjct: 61  RGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKSGLKA 120

Query: 121 GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFG 180
           GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFG
Sbjct: 121 GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAPPRFG 180

Query: 181 RKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVNTGKAVGG 240
           RKLTEAQKAKATHICLDCGYIYTLSKPFDE ADGYVCPQCRAPKKRFARYDVNTGKAVGG
Sbjct: 181 RKLTEAQKAKATHICLDCGYIYTLSKPFDELADGYVCPQCRAPKKRFARYDVNTGKAVGG 240

Query: 241 GLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           GLPPIGVIAGLVAG+GAVGALLVYGLQ
Sbjct: 241 GLPPIGVIAGLVAGIGAVGALLVYGLQ 267

[Close]
BLAST of Carg08476 vs. NCBI nr
Match: XP_022158726.1 (uncharacterized protein LOC111025185 [Momordica charantia])

HSP 1 Score: 455.7 bits (1171), Expect = 1.1e-124
Identity = 238/274 (86.86%), Postives = 249/274 (90.88%), Query Frame = 0 

Query: 1   MSSAIVAGSSAAFARTSIGAPPFPAPNPSLSL-----QKSAFQGVSVQEAKKG--VSHWF 60
           MSSA+VAGSS AFARTSIGAP FP+P PS S      QKSAF GVSVQEAKKG  VSHWF
Sbjct: 1   MSSAVVAGSS-AFARTSIGAPRFPSPKPSASAAPPHPQKSAFHGVSVQEAKKGVLVSHWF 60

Query: 61  VAENGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNA 120
           VAENG   GK  +GL+I++AKTAGASKTIEVEVDKPLGLTLGQKP GGVVIT VDGGGNA
Sbjct: 61  VAENGDFSGKPRRGLQIRSAKTAGASKTIEVEVDKPLGLTLGQKPAGGVVITAVDGGGNA 120

Query: 121 AKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKR 180
           AK+GLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKR
Sbjct: 121 AKAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKR 180

Query: 181 PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVN 240
           PAPPRFGRKLTE+QKAKATHICLDCGYIYTLSKPFDEQ DGY CPQC APKKRFA+YDVN
Sbjct: 181 PAPPRFGRKLTESQKAKATHICLDCGYIYTLSKPFDEQPDGYACPQCIAPKKRFAKYDVN 240

Query: 241 TGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           TGKA+GGGLPPI VIAGLVAG+ AVGALLVYGLQ
Sbjct: 241 TGKAIGGGLPPISVIAGLVAGIAAVGALLVYGLQ 273

[Close]
BLAST of Carg08476 vs. NCBI nr
Match: XP_023549894.1 (uncharacterized protein LOC111808255 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.1 bits (1167), Expect = 3.2e-124
Identity = 236/274 (86.13%), Postives = 251/274 (91.61%), Query Frame = 0 

Query: 1   MSSAIVAGS----SAAFAR-TSIGAPPFPAPNPSLS--LQKSAFQGVSVQEAKKGVSHWF 60
           MSSAIVAGS    SAAF R T+IGAP FP+  PS+    QKSAFQG+SVQEAKKGVSHWF
Sbjct: 1   MSSAIVAGSSSSCSAAFTRTTTIGAPLFPSSKPSVPPLPQKSAFQGLSVQEAKKGVSHWF 60

Query: 61  VAENGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNA 120
           VAENG    ++ +GL+I+AAKTAGASKT+EVEVDKPLGLTLGQKPGGGVVIT VDGGGNA
Sbjct: 61  VAENGEAHSRSRRGLQIRAAKTAGASKTVEVEVDKPLGLTLGQKPGGGVVITAVDGGGNA 120

Query: 121 AKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKR 180
           AKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVV+RGA+VDVKRLPKR
Sbjct: 121 AKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGADVDVKRLPKR 180

Query: 181 PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVN 240
           PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQ +GY CPQC APKKRFARYDVN
Sbjct: 181 PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQPEGYACPQCVAPKKRFARYDVN 240

Query: 241 TGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           TGKA+GGGLPPIGVIAGLVAG+ AVGALLVYGLQ
Sbjct: 241 TGKAIGGGLPPIGVIAGLVAGVAAVGALLVYGLQ 274

[Close]
BLAST of Carg08476 vs. NCBI nr
Match: XP_022969752.1 (protein MET1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 452.6 bits (1163), Expect = 9.3e-124
Identity = 235/274 (85.77%), Postives = 250/274 (91.24%), Query Frame = 0 

Query: 1   MSSAIVAGS----SAAFAR-TSIGAPPFPAPNPSLS--LQKSAFQGVSVQEAKKGVSHWF 60
           MSSAIVAGS    SAAF R TSIGAP FP+  PS+    QKSAFQG+SVQEAKKGVSHWF
Sbjct: 1   MSSAIVAGSSSSCSAAFTRTTSIGAPLFPSSKPSVPPLPQKSAFQGLSVQEAKKGVSHWF 60

Query: 61  VAENGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNA 120
           VAENG    ++ +GL+I+AAKTAGASKT+EVEVDKPLGLTLGQKPGGGVVIT VDGGGNA
Sbjct: 61  VAENGEAHSRSRRGLQIRAAKTAGASKTVEVEVDKPLGLTLGQKPGGGVVITAVDGGGNA 120

Query: 121 AKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKR 180
           +KSGLK GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVV+RGA+VDVKRLPKR
Sbjct: 121 SKSGLKVGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGADVDVKRLPKR 180

Query: 181 PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVN 240
           PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQ +GY CPQC APKKRFARYDVN
Sbjct: 181 PAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQPEGYACPQCVAPKKRFARYDVN 240

Query: 241 TGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           TGKA+GGGLPPIGVIAGLVAG+ AVGALLVYGLQ
Sbjct: 241 TGKAIGGGLPPIGVIAGLVAGVAAVGALLVYGLQ 274

[Close]
BLAST of Carg08476 vs. TAIR10
Match: AT5G17170.1 (rubredoxin family protein)

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-103
Identity = 201/271 (74.17%), Postives = 226/271 (83.39%), Query Frame = 0 

Query: 2   SSAIVAGS--SAAFARTSIGAPPFPAPNPSLSL--QKSAFQGVSVQEAKKGVSHWF-VAE 61
           +S  ++G+  S+ F +T+  + P P  + S SL  QK+ FQGVS++++KK VS  F V+E
Sbjct: 3   TSGAISGATVSSFFTKTTTTSNPSPKLHSSASLLSQKTVFQGVSLEDSKKSVSEIFAVSE 62

Query: 62  NGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGNAAKS 121
                    +  EIKA   A ASKTIEVEVDKPLGLTLGQK GGGVVITGVDGGGNAAK+
Sbjct: 63  RKIGGLNGLRRFEIKA--RAAASKTIEVEVDKPLGLTLGQKQGGGVVITGVDGGGNAAKA 122

Query: 122 GLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPKRPAP 181
           GLK+GDQV+YTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVK+L KRPAP
Sbjct: 123 GLKSGDQVVYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKKLNKRPAP 182

Query: 182 PRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDVNTGK 241
           PRFGRKLTE QKA+ATHICLDCG+IYTL K FDEQ D YVCPQC APKKRFA+YDVNTGK
Sbjct: 183 PRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRFAKYDVNTGK 242

Query: 242 AVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           A+GGGLPPIGVI GL+AGLGAVGALLVYGLQ
Sbjct: 243 AIGGGLPPIGVIVGLLAGLGAVGALLVYGLQ 271

[Close]
BLAST of Carg08476 vs. TAIR10
Match: AT5G51010.1 (Rubredoxin-like superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-10
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 0 

Query: 168 KRLPKRPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRF 227
           K+   + + PRF  +++    +K  +IC DCGYIY    PFD+  D Y CP C APK+RF
Sbjct: 43  KKSLSKSSAPRFSMRVS----SKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPKRRF 102

Query: 228 ARY-------------------DVNTGKAVGGGLPPIGVIAGLVA 254
             Y                   ++   +AVG  L PIG+  G++A
Sbjct: 103 RAYMPDVSKNVNDKDVRKARKAELQRDEAVGKAL-PIGIAVGVLA 142

[Close]
BLAST of Carg08476 vs. TAIR10
Match: AT1G55480.1 (protein containing PDZ domain, a K-box domain, and a TPR region)

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-05
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 88  KPLGLTLGQKPGGGVVITGVDGGGNAAKSG-LKAGDQVLYTSSFFGDELWPADKLGFTKT 147
           +P GL   +   GG  I  +  GG+A K+G    GD+V+ TS+ FG E+WPA + G T  
Sbjct: 95  QPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVFGTEIWPAAEYGRTMY 154

Query: 148 AIQAK 152
            I+ +
Sbjct: 155 TIRQR 159

[Close]
BLAST of Carg08476 vs. TrEMBL
Match: tr|A0A0A0KPK9|A0A0A0KPK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168980 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 1.4e-120
Identity = 234/276 (84.78%), Postives = 248/276 (89.86%), Query Frame = 0 

Query: 1   MSSAIVAGS-----SAAFARTSI-GAPPFPAPNPSLSL--QKSAFQGVSVQEAKKGVSHW 60
           MSSAIVA S     SAA+ R+SI  +P FP+P PS+SL  QKS F G+SV EAKKGVSHW
Sbjct: 1   MSSAIVAASXXXXCSAAYTRSSIRSSPHFPSPKPSVSLTTQKSVFLGLSVAEAKKGVSHW 60

Query: 61  FVAEN-GAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGG 120
           F AEN  A  GK  KGL+I+AAKTAGASKTIEVEVDKPLGLTLGQK GGGVVIT VDGGG
Sbjct: 61  FTAENTEAEGGKRSKGLQIRAAKTAGASKTIEVEVDKPLGLTLGQKSGGGVVITAVDGGG 120

Query: 121 NAAKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLP 180
           NAAK+GLK+GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLP
Sbjct: 121 NAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLP 180

Query: 181 KRPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYD 240
           KRPAPPRFGRKLT+AQKAKATHICLDCGYIYTLSKPFDEQ DGY CPQC APKKRFA+YD
Sbjct: 181 KRPAPPRFGRKLTDAQKAKATHICLDCGYIYTLSKPFDEQPDGYACPQCIAPKKRFAKYD 240

Query: 241 VNTGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           V+TGKAVGGGLPPIGVIAGLVAG+GAVGALLVYGLQ
Sbjct: 241 VSTGKAVGGGLPPIGVIAGLVAGIGAVGALLVYGLQ 276

[Close]
BLAST of Carg08476 vs. TrEMBL
Match: tr|A0A1S3CT84|A0A1S3CT84_CUCME (uncharacterized protein LOC103504684 OS=Cucumis melo OX=3656 GN=LOC103504684 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 3.1e-115
Identity = 228/275 (82.91%), Postives = 242/275 (88.00%), Query Frame = 0 

Query: 1   MSSAIVAGS-----SAAFARTSI-GAPPFPAPNPSLS--LQKSAFQGVSVQEAKKGVSHW 60
           MSSAIVA S     SAAF R+SI  +P FP+P  S+S   QKS F G+SV EAKKGVS  
Sbjct: 1   MSSAIVAASSXXXCSAAFTRSSIRSSPHFPSPKSSVSPNPQKSVFLGLSVPEAKKGVS-- 60

Query: 61  FVAENGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGN 120
            V    A  GK  KGL+I+AAKTAGASKTIEVEVDKPLGLTLGQK GGGVVIT VDGGGN
Sbjct: 61  AVENTEADGGKWSKGLQIRAAKTAGASKTIEVEVDKPLGLTLGQKSGGGVVITAVDGGGN 120

Query: 121 AAKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPK 180
           AAK+GLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVV+RGAEVDVKRLPK
Sbjct: 121 AAKAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGAEVDVKRLPK 180

Query: 181 RPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDV 240
           RPAPPRFGRKLT+AQKAKATHICLDCGYIYTLSKPFDEQ DGY CPQCRAPKKRFA+YDV
Sbjct: 181 RPAPPRFGRKLTDAQKAKATHICLDCGYIYTLSKPFDEQPDGYACPQCRAPKKRFAKYDV 240

Query: 241 NTGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           +TGKA+GGGLPPIGVIAGLVAG+GAVGALLVYGLQ
Sbjct: 241 STGKAIGGGLPPIGVIAGLVAGIGAVGALLVYGLQ 273

[Close]
BLAST of Carg08476 vs. TrEMBL
Match: tr|A0A2C9VGY3|A0A2C9VGY3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G164800 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 6.8e-107
Identity = 211/275 (76.73%), Postives = 233/275 (84.73%), Query Frame = 0 

Query: 1   MSSAIVAGS-----SAAFARTS-IGAPPFPAPNPSLS--LQKSAFQGVSVQEAKKGVSHW 60
           M SA+VAGS     SA F R++ I  PP  +  P LS   Q++AFQG+S+Q+AK+G S  
Sbjct: 1   MPSAVVAGSSSSSCSATFTRSNPIKTPPTSSTKPILSSPFQRTAFQGLSLQDAKRGSSEI 60

Query: 61  FVAENGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGGN 120
           F+AE  +      +GL+I  A+TAGASK+IEVEVDKPLGLTLGQK GGGVVIT VDGGGN
Sbjct: 61  FLAEKKSSFTNARRGLQI-TARTAGASKSIEVEVDKPLGLTLGQKSGGGVVITAVDGGGN 120

Query: 121 AAKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLPK 180
           AA++GLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVK+L K
Sbjct: 121 AARAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKKLTK 180

Query: 181 RPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYDV 240
           RPAPPRFGRKLTEAQKA+ATHICLDCGYIYT  KPFDEQ D Y CPQC APKKRFARYDV
Sbjct: 181 RPAPPRFGRKLTEAQKARATHICLDCGYIYTAQKPFDEQPDTYACPQCIAPKKRFARYDV 240

Query: 241 NTGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           NTG+A+GGGLPPIGVI GLVAGLGAVGALLVYGLQ
Sbjct: 241 NTGRAIGGGLPPIGVIIGLVAGLGAVGALLVYGLQ 274

[Close]
BLAST of Carg08476 vs. TrEMBL
Match: tr|A0A061EZ95|A0A061EZ95_THECC (Rubredoxin family protein OS=Theobroma cacao OX=3641 GN=TCM_025366 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 1.5e-106
Identity = 209/277 (75.45%), Postives = 236/277 (85.20%), Query Frame = 0 

Query: 1   MSSAIVAGSSAAFA------RTSIGAPPFPAPN--PSLSLQKSAFQGVSVQEAKKGVSHW 60
           MSSA+VAG+S++ +        SI A P P+P      + QK+A+QG+S+ EAKKGVS +
Sbjct: 1   MSSAVVAGASSSCSAALTSRNNSIKANPTPSPKAFTPYTSQKTAWQGLSLLEAKKGVSGF 60

Query: 61  FVAENGAPRGKTW--KGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGG 120
           F+AE  +    +   +GLEI  A+TAGAS+TIEVEVDKPLGLTLGQK GGGVVIT VDGG
Sbjct: 61  FLAERKSSFSSSHARRGLEI-TARTAGASRTIEVEVDKPLGLTLGQKQGGGVVITAVDGG 120

Query: 121 GNAAKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRL 180
           GNAAK+GLKAGDQVLYTSSFFGDELWPADKLGFTKTA+QAKPDSVYFVV+RGAEVDVKRL
Sbjct: 121 GNAAKAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAVQAKPDSVYFVVNRGAEVDVKRL 180

Query: 181 PKRPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARY 240
            KRPAPPRFGRKLTEAQKA+A+HICLDCGYIYT  KPFDEQ D Y CPQCRAPKKRFA+Y
Sbjct: 181 TKRPAPPRFGRKLTEAQKARASHICLDCGYIYTAQKPFDEQPDTYACPQCRAPKKRFAKY 240

Query: 241 DVNTGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           DVNTGKA+GGGLPPIGVI GL+AG+GAVGALLVYGLQ
Sbjct: 241 DVNTGKAIGGGLPPIGVIIGLIAGVGAVGALLVYGLQ 276

[Close]
BLAST of Carg08476 vs. TrEMBL
Match: tr|A0A1U8NPM1|A0A1U8NPM1_GOSHI (uncharacterized protein LOC107950574 OS=Gossypium hirsutum OX=3635 GN=LOC107950574 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.6e-106
Identity = 211/276 (76.45%), Postives = 231/276 (83.70%), Query Frame = 0 

Query: 1   MSSAIVAGS----SAAFA---RTSIGAPPFPAPNPSLSLQKSAFQGVSVQEAKKGVSHWF 60
           MSSA++AG+    SAAF      S      P+P    + QK+A QG+S+QEAK+GVS +F
Sbjct: 1   MSSAVIAGASSSCSAAFTSRKNCSNKTTSTPSPKAFNTSQKTALQGLSLQEAKRGVSDFF 60

Query: 61  VAE--NGAPRGKTWKGLEIKAAKTAGASKTIEVEVDKPLGLTLGQKPGGGVVITGVDGGG 120
           +AE  +        +GLEI  A+TAGASKTIEVEVDKPLGLTLGQK GGGVVIT VDGGG
Sbjct: 61  IAEKKSSVCSSHARRGLEI-TARTAGASKTIEVEVDKPLGLTLGQKQGGGVVITAVDGGG 120

Query: 121 NAAKSGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLP 180
           NAAK+GLKAGDQ LYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLP
Sbjct: 121 NAAKAGLKAGDQALYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKRLP 180

Query: 181 KRPAPPRFGRKLTEAQKAKATHICLDCGYIYTLSKPFDEQADGYVCPQCRAPKKRFARYD 240
           KRPAPPRFGRKLTEAQKA+ATHICLDCGYIYT  KPFDEQ D Y CPQC+APKKRFA YD
Sbjct: 181 KRPAPPRFGRKLTEAQKARATHICLDCGYIYTAQKPFDEQPDTYGCPQCQAPKKRFAPYD 240

Query: 241 VNTGKAVGGGLPPIGVIAGLVAGLGAVGALLVYGLQ 268
           VNTGKA+GGGLPPIGVI GL+AG+GAVGALLVYGLQ
Sbjct: 241 VNTGKAIGGGLPPIGVIIGLLAGVGAVGALLVYGLQ 275

The following BLAST results are available for this feature:
BLAST of Carg08476 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958499.13.0e-146100.00uncharacterized protein LOC111459708 [Cucurbita moschata] >XP_023532687.1 unchar... [more]
XP_022995246.13.3e-14599.25uncharacterized protein LOC111490851 [Cucurbita maxima][more]
XP_022158726.11.1e-12486.86uncharacterized protein LOC111025185 [Momordica charantia][more]
XP_023549894.13.2e-12486.13uncharacterized protein LOC111808255 [Cucurbita pepo subsp. pepo][more]
XP_022969752.19.3e-12485.77protein MET1, chloroplastic-like [Cucurbita maxima][more]
BLAST of Carg08476 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17170.11.3e-10374.17rubredoxin family protein[more]
AT5G51010.14.9e-1034.29Rubredoxin-like superfamily protein[more]
AT1G55480.16.2e-0538.46protein containing PDZ domain, a K-box domain, and a TPR region[more]
BLAST of Carg08476 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg08476 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPK9|A0A0A0KPK9_CUCSA1.4e-12084.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168980 PE=4 SV=1[more]
tr|A0A1S3CT84|A0A1S3CT84_CUCME3.1e-11582.91uncharacterized protein LOC103504684 OS=Cucumis melo OX=3656 GN=LOC103504684 PE=... [more]
tr|A0A2C9VGY3|A0A2C9VGY3_MANES6.8e-10776.73Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G164800 PE=4 SV=... [more]
tr|A0A061EZ95|A0A061EZ95_THECC1.5e-10675.45Rubredoxin family protein OS=Theobroma cacao OX=3641 GN=TCM_025366 PE=4 SV=1[more]
tr|A0A1U8NPM1|A0A1U8NPM1_GOSHI2.6e-10676.45uncharacterized protein LOC107950574 OS=Gossypium hirsutum OX=3635 GN=LOC1079505... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR024934Rubredoxin-like_dom
IPR001478PDZ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005506 iron ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08476-RACarg08476-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.20.28.10coord: 186..230
e-value: 5.1E-8
score: 34.1
NoneNo IPR availableGENE3DG3DSA:2.30.42.10coord: 69..129
e-value: 1.9E-6
score: 29.5
NoneNo IPR availablePANTHERPTHR45293FAMILY NOT NAMEDcoord: 3..267
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 81..125
e-value: 1.63567E-6
score: 43.7095
NoneNo IPR availableCDDcd00350rubredoxin_likecoord: 193..227
e-value: 1.17313E-7
score: 46.0068
NoneNo IPR availableSUPERFAMILYSSF57802Rubredoxin-likecoord: 191..233
IPR001478PDZ domainPROSITEPS50106PDZcoord: 69..125
score: 9.431
IPR024934Rubredoxin-like domainPROSITEPS50903RUBREDOXIN_LIKEcoord: 190..230
score: 9.823
IPR036034PDZ superfamilySUPERFAMILYSSF50156PDZ domain-likecoord: 88..162

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08476Cla003586Watermelon (97103) v1carwmB0710
Carg08476CmaCh15G013750Cucurbita maxima (Rimu)carcmaB0993
Carg08476CmaCh02G010010Cucurbita maxima (Rimu)carcmaB0999
Carg08476CmoCh15G014370Cucurbita moschata (Rifu)carcmoB0965
Carg08476CmoCh02G010150Cucurbita moschata (Rifu)carcmoB0971
Carg08476Lsi09G005300Bottle gourd (USVL1VR-Ls)carlsiB648
Carg08476Cp4.1LG13g00720Cucurbita pepo (Zucchini)carcpeB0995
Carg08476Cp4.1LG05g07160Cucurbita pepo (Zucchini)carcpeB1002
Carg08476Cla97C01G005250Watermelon (97103) v2carwmbB0741
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg08476Carg20830Silver-seed gourdcarcarB586
The following block(s) are covering this gene:
GeneOrganismBlock
Carg08476Watermelon (97103) v2carwmbB0743
Carg08476Watermelon (97103) v2carwmbB0744
Carg08476Wax gourdcarwgoB0834
Carg08476Wax gourdcarwgoB0837
Carg08476Cucumber (Gy14) v2carcgybB0708
Carg08476Cucumber (Gy14) v2carcgybB0711
Carg08476Cucumber (Gy14) v1carcgyB0793
Carg08476Cucumber (Gy14) v1carcgyB0796
Carg08476Cucurbita maxima (Rimu)carcmaB0995
Carg08476Cucurbita moschata (Rifu)carcmoB0966
Carg08476Cucurbita moschata (Rifu)carcmoB0967
Carg08476Cucurbita moschata (Rifu)carcmoB0972
Carg08476Cucurbita pepo (Zucchini)carcpeB0998
Carg08476Cucurbita pepo (Zucchini)carcpeB1001
Carg08476Wild cucumber (PI 183967)carcpiB0746
Carg08476Wild cucumber (PI 183967)carcpiB0749
Carg08476Cucumber (Chinese Long) v2carcuB0733
Carg08476Cucumber (Chinese Long) v3carcucB0749
Carg08476Cucumber (Chinese Long) v3carcucB0752
Carg08476Bottle gourd (USVL1VR-Ls)carlsiB653
Carg08476Melon (DHL92) v3.5.1carmeB0710
Carg08476Melon (DHL92) v3.5.1carmeB0705
Carg08476Melon (DHL92) v3.6.1carmedB0718
Carg08476Melon (DHL92) v3.6.1carmedB0723
Carg08476Watermelon (Charleston Gray)carwcgB0688
Carg08476Watermelon (Charleston Gray)carwcgB0691
Carg08476Watermelon (97103) v1carwmB0707