Carg08400 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08400
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA binding motif protein 18
Location	Cucurbita_argyrosperma_scaffold_022 : 73556 .. 77265 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTCAGCTGTTCATCTCTAGAATCTTCCTTGGCATGGGCAGAGGTGAAGAGAAGAATTGCAACCATTTTAATACCAATACATATTGAACGAATATGTTCACTTTTATGGATTTTTATATATTTTATAGCTCTGTATATTGTTGGGCAAGAATGTATACGCTGGAAAGTAGGTTGAATTTGCGGGGGAGTCTGGGGGTTTTGACCTTACTAAGAATAGTTAGCCTGTTGGTGATATGTTTCTATCTTGTATTAAAGAACTTTGTACATAACAATTATTTTTATATCAATTTGGATGTCTCTTAATAAGAAATATTATTGAAGTTGTTATTTTATCATATATAAATTCATGCAGATATGCTGTGAAGTCCAGAAAAATCCCTATACTTTCGTGGAACTGAACTTGCTGATTGGCTCACTTATGGTTATGGTATATTCATGATCCTATTTTTTATGCATTCACTTCCTTTTGACCATTTATTCTTTTAGTATTTGAGTCTAAATATCATATCTTATAGGTTTTTTTTTTTTTTTTCTTTTTTTTTGTGTGCGTGTTTTGAATCCCCAATTTATGGCATCGGTCATAGCTGAATAATGTTTGATGCTTGTCAAATGTTATCATCTTCTGGTGTTTCCTACTAGCAGGTTAATTTTTATGGAGATAGAGTCTCAAGTCCACAGTATCCACCCTGGAATTAATTTGGATGGTTCTATTCTAAATTATAATTAACCTTGAATCTGTGCCTGGTTTGTTGATTGTAAAGTTGCACATTATTAATAACCAAGTTATTTTTCAGAAAAAAAAAAGGACCAAGTTTTTTTGTTTGAGATCATGCGATTGACTATACCTACACAAGTTTCTTTCCACATTCTCTAATTTAGTGGCCGGTGTTTTTGGTGGGGATAGCCACTTGAATGGAGGGTAAAAATATTTATTCAGGAGCAAGATAAGTTATCCTGAAAAGTACGGTGGAAAATGTATATCTGGTTCGTGAATGAAGGGGTAAATTCAGATCACCTTCTCATTTTATCAGCAACTCAAGAGTTAAAATTGGGGCCCTGCACCTTCTTTTCGTTTAAAATTTATGTAGTTTGAACCACCCTTCTTTCCGAGCCCTCATTTCTTATTATCCTTAAACAACCTTTCCACCTACTGAAGATCGGGGGGAAATCTTGGTGTTCAATGGCTGGCCAGTTGCATATGCATGCTACAGTTGAAAGCCCTCATGGAGAAATGTTGGAACAGATGAAAGAGCTAAAAGAAAAACTAGTGCTCCTGAAGTTCTACTGGAAAGTGGCAGATTGGACGAGGAAAACAATAACGAAAGATTCAACTGAAAAACAGCCTTCTTGGTCTGACAGCAAGGAGGAATGTTTTTGGAGATAGAGATGCAAACAAAAATGGGTCAGGTAGGGAGATGAAAATCTTGGATGGGAGGATAGATCTTGAATTTTTTATCCCTTTTCAACAATTTGACAGTGGGGAAAGATTACTACTTGAGTGCTACAATTGGAATTCCATCTCATTTAGAAAGTACCAGACTTGTGCAAAACTTCATGGAGGAAGAGATTTTGGAGTAGTTTCTCCTGGAGTGGCCAAGTCCTGGGCACTGGTGTCACTTCGATTCTGATGTCTTGGAACAAGGAATATCATCAAAAACAATTTTGTGACTTCGTTCCAACATTTTTCTCTCGTCTAAAATTGCTTATGTTAGCATTAATGAAATGTATACCTGCTTCATTCCAAAAAGAGCATTGATTGTTGTGGAGATCAAGGACACTAGACCTTATTTGGCTAAAAAGTTCAAATTGGTTCTCACATAGATTATTACTAAGCATGCACACTCCCATAGGTTATTACTAGATGCCAAATGAGAAGACAAATCTTTATTTCAAATGGAAAATGAGGATTAGAGAGGGTATCTTCATCATACAGACTTCTTTATCATCCTTACTGGGAAGCCAAGAGGGAAACAAGAAGAGGATCTGAGTCAGGTTGGCCAACTGTATCCAATAGTTTGACTGGACCATATTTCCGATAGCTTTGAAGACAAGTTTCATTCTGGGCTTTGATGAGAGGCTGAGTAGAATGAAATTAGAGAACATTTCGAATGTGAGGAACACACAAATACTTGGGAGAATGCTACTTTTGTTGCTTCTTTTGGGAGTTCTTGCCCAAAACATTTTGTAACTATTTTCCCTCCTTTATAAACACTAATTGGCCTGCCTTCTTGTACGCTCCTAGAGCCACCCCTACCACAATAAATAATAAAATGAAATAATAATAATAATAATACAAGAAGAGAAAAAGGAGAAAAAAACATCTCAGGTGGAGAATGCTGGTGAAGTCAAACTTATCACTGTTTTGAAGCTTTTTGCTGAAACCTTCCTGAGAATAATAGTCTTCTGTTGGTATTTTATTCTGCTTTCTTATTTTTAGATTCTTTGTCCACTAAGTCTTGTAGTCTGCCACATCGGCATCCAACCTAACGCACTTGCATTATTCTATACTACAGCCATAGACATTGTGGTAATTTATTGGAGAATACCTTTCAGTTATACGTGAGCCGTATGGTGCTTAGCCTAGTTGTTTTTTGTTTCCACTTGTGAATTCTCTGTTAATACTATATATATGGTTAAAATATAAGTTCAATTTACTGTGTCAACACAGGTTCCGGATTTCTGAGTATATTTTTTATGAAAAGCCTATATATTTATATATTTATAACATTGACGACTTTTTTGGTTCTGTAAACTTGTTTACTTTTTAGCTGTATTTGTAACAGACCAAGCTCACCGCGGGCAGATATTTTCTAGCTAGATTTCTCGAGTATATTTTTTTGTTGTGGTACATCGTCCGGTGTCTGGCTTTAATATCACATCGATTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGCAAACACGTTTTAAAAACCTTGAGGGGAAGCCTGATAGGAAAACCCAAAAAGACCATATTTGCTAGCAGTGGGCTTGGACTGTTTCAGTATTAATATACACTATTTATTTATTTATTTATGGAATGACTTCCGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAGTAAGGAACATTAGTTTCCCAGCATCTGCAATGTATTTATTTGTCTTCCAGTTTCGCTCTTCTGTATTTAAGTCTGTATCAACATGTTTCAGAGCGGCTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACACGTGGTCCGAAGCGTGGAGAGCCACGCGGATTCGCCTTCATTGAATACAGCTCCAAGGAGGTAAATTGCTTGGTTTACTACTTAAAAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGAAGCTAAACTGGCTAAAGAGAATATGCATGGAAAATTAGCTTGCAGTCGTCCATTGGTCGTGCGCCTTGCGAGTGAGAAGCTCGTGATTAACACAACAAATAATAATAATACTTCAAGAGCAGCAGGTGAGACGAGCAAATCAAGACCGAGTGGCAGCAACTACGGACATATGAGTCGCAGCGATAAGATTGCTGCCATAAAGAACAAATTGAGAGCTTTGGAAGGAGGAGAGGGGGAGAGGTCTGGTGTGAAAAAACAGAAGCAAGGT

mRNA sequence

AAGTTCAGCTGTTCATCTCTAGAATCTTCCTTGGCATGGGCAGAGATATGCTGTGAAGTCCAGAAAAATCCCTATACTTTCGTGGAACTGAACTTGCTGATTGGCTCACTTATGGTTATGATAATATCTGAGGATTTCTTGTGGCACACACGTGGTCCGAAGCGTGGAGAGCCACGCGGATTCGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAACTGGCTAAAGAGAATATGCATGGAAAATTAGCTTGCAGTCGTCCATTGGTCGTGCGCCTTGCGAGTGAGAAGCTCGTGATTAACACAACAAATAATAATAATACTTCAAGAGCAGCAGGTGAGACGAGCAAATCAAGACCGAGTGGCAGCAACTACGGACATATGAGTCGCAGCGATAAGATTGCTGCCATAAAGAACAAATTGAGAGCTTTGGAAGGAGGAGAGGGGGAGAGGTCTGGTGTGAAAAAACAGAAGCAAGGT

Coding sequence (CDS)

AAGTTCAGCTGTTCATCTCTAGAATCTTCCTTGGCATGGGCAGAGATATGCTGTGAAGTCCAGAAAAATCCCTATACTTTCGTGGAACTGAACTTGCTGATTGGCTCACTTATGGTTATGATAATATCTGAGGATTTCTTGTGGCACACACGTGGTCCGAAGCGTGGAGAGCCACGCGGATTCGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAACTGGCTAAAGAGAATATGCATGGAAAATTAGCTTGCAGTCGTCCATTGGTCGTGCGCCTTGCGAGTGAGAAGCTCGTGATTAACACAACAAATAATAATAATACTTCAAGAGCAGCAGGTGAGACGAGCAAATCAAGACCGAGTGGCAGCAACTACGGACATATGAGTCGCAGCGATAAGATTGCTGCCATAAAGAACAAATTGAGAGCTTTGGAAGGAGGAGAGGGGGAGAGGTCTGGTGTGAAAAAACAGAAGCAAGGT

Protein sequence

KFSCSSLESSLAWAEICCEVQKNPYTFVELNLLIGSLMVMIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG

Homology

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BLAST of Carg08400 vs. NCBI nr
Match: XP_022958046.1 (probable RNA-binding protein 18 isoform X2 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVI
Sbjct: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKESMHGKLACSRPLVVRLASEKLVI 100

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160
           NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
Sbjct: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160

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BLAST of Carg08400 vs. NCBI nr
Match: XP_022958043.1 (probable RNA-binding protein 18 isoform X1 [Cucurbita moschata] >XP_022958045.1 probable RNA-binding protein 18 isoform X1 [Cucurbita moschata] >XP_022958048.1 probable RNA-binding protein 18 isoform X1 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVI
Sbjct: 71  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKESMHGKLACSRPLVVRLASEKLVI 130

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160
           NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
Sbjct: 131 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 190

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BLAST of Carg08400 vs. NCBI nr
Match: XP_022958047.1 (probable RNA-binding protein 18 isoform X3 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVI
Sbjct: 39  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKESMHGKLACSRPLVVRLASEKLVI 98

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160
           NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
Sbjct: 99  NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 158

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BLAST of Carg08400 vs. NCBI nr
Match: XP_023534515.1 (probable RNA-binding protein 18 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 114/120 (95.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLV 
Sbjct: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVX 100

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160
            XXXXXXXX    ETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
Sbjct: 101 XXXXXXXXXXXXXETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160

[Close]

BLAST of Carg08400 vs. NCBI nr
Match: XP_023534514.1 (probable RNA-binding protein 18 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534516.1 probable RNA-binding protein 18 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 114/120 (95.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLV 
Sbjct: 71  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVX 130

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160
            XXXXXXXX    ETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
Sbjct: 131 XXXXXXXXXXXXXETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 190

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BLAST of Carg08400 vs. TAIR10
Match: AT5G52545.1 (unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-11
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 79  MHGKLACSRPLVVRLASEKLVINXXXXXXXXRAAGETSKSR-PSGSNYGHMSRSDKIAAI 138
           MHG+LAC RPLVVRLASEK  +         R+  E +++R  +GS+ G MSR +K+ AI
Sbjct: 1   MHGRLACGRPLVVRLASEK-HLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAI 60

Query: 139 KNKLRALEGGEGERSGVKKQK 159
           KNKL+ALE  E E+   KKQK
Sbjct: 61  KNKLKALE--EDEKRDPKKQK 78

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BLAST of Carg08400 vs. TAIR10
Match: AT1G71770.1 (poly(A)-binding protein 5)

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 55  RGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEK 98
           +G  RGF F+ YS+ EEA LA + M+GK+   +PL V LA  K
Sbjct: 378 QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 420

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BLAST of Carg08400 vs. TAIR10
Match: AT3G16380.1 (poly(A) binding protein 6)

HSP 1 Score: 40.8 bits (94), Expect = 9.2e-04
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEK 98
           I+S   + H    + G  +GF F+ +S+ EE+K AK  ++G L   +P+VVR+A  K
Sbjct: 330 IVSAKVMCH----ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382

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BLAST of Carg08400 vs. Swiss-Prot
Match: sp|Q6PBM8|RBM18_DANRE (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 45  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINXXX 104
           DFL+H  GP  G+PRG+ F+ + +KEEA+ A + ++GKLA S+ LVVR A  +       
Sbjct: 53  DFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVVRWAHAQR-FEPFR 112

Query: 105 XXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSG 154
                 A+ E S S         +S + KI AI+ KL+ +E    + SG
Sbjct: 113 GEKNMPASLEPSSSEAEDLPTS-LSVNAKIRAIEAKLQMMEENPDDYSG 159

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BLAST of Carg08400 vs. Swiss-Prot
Match: sp|Q66J99|RBM18_XENLA (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 45  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASE--KLVINX 104
           DFL+H  GP  G+PRG+ F+ + +K EA+ A   ++GK+A S+ LVVR A    K   N 
Sbjct: 55  DFLFHKSGPLEGQPRGYCFVNFETKAEAERAIHCLNGKMALSKKLVVRWAHAQIKRYDNC 114

Query: 105 XXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRAL 145
                   +   +S + P+ S    +S S KI AI+ KL+ +
Sbjct: 115 KNEKVLPISLEPSSSTEPTQST---LSVSAKIKAIEAKLKMM 153

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BLAST of Carg08400 vs. Swiss-Prot
Match: sp|Q3ZCC5|RBM18_BOVIN (Probable RNA-binding protein 18 OS=Bos taurus OX=9913 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-07
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 45  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRL--ASEKLVINX 104
           DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR   A  K   + 
Sbjct: 55  DFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHN 114

Query: 105 XXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRAL 145
                   +   +S + P+ SN   +S + KI AI+ KL+ +
Sbjct: 115 KNDKILPISLEPSSSTEPAQSN---LSVTAKIKAIEAKLKMM 153

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BLAST of Carg08400 vs. Swiss-Prot
Match: sp|Q96H35|RBM18_HUMAN (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-07
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 45  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRL--ASEKLVINX 104
           DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR   A  K   + 
Sbjct: 55  DFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHN 114

Query: 105 XXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRAL 145
                   +   +S + P+ SN   +S + KI AI+ KL+ +
Sbjct: 115 KNDKILPISLEPSSSTEPTQSN---LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Carg08400 vs. Swiss-Prot
Match: sp|Q9CR83|RBM18_MOUSE (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-07
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 45  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRL--ASEKLVINX 104
           DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR   A  K   + 
Sbjct: 55  DFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHN 114

Query: 105 XXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRAL 145
                   +   +S + P+ SN   +S + KI AI+ KL+ +
Sbjct: 115 KNDKILPISLEPSSSTEPAQSN---LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Carg08400 vs. TrEMBL
Match: tr|A0A1S3ATX2|A0A1S3ATX2_CUCME (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.6e-40
Identity = 93/119 (78.15%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE MHGKLAC RPLVVRLASEKL++
Sbjct: 39  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMV 98

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQ 160
           N        +AA E+ KSR  GS+YG ++RSDKIAAIKNKLRALEGG GE S VKK KQ
Sbjct: 99  N--TANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGG-GESSSVKKPKQ 154

[Close]

BLAST of Carg08400 vs. TrEMBL
Match: tr|A0A0A0KJM9|A0A0A0KJM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-39
Identity = 93/119 (78.15%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE MHGKLAC RPLVVRLASEKL+ 
Sbjct: 71  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMT 130

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQ 160
           N        R A E+ KSR  GS+YG ++RSDKIAAIKNKLRALEGG GE S VKK KQ
Sbjct: 131 N--TTNDTSRTASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGG-GESSSVKKPKQ 186

[Close]

BLAST of Carg08400 vs. TrEMBL
Match: tr|A0A2I4G3Z0|A0A2I4G3Z0_9ROSI (probable RNA-binding protein 18 isoform X1 OS=Juglans regia OX=51240 GN=LOC109004511 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-33
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           I+SEDFLWHTRGPKRG PRGFAF++YS+KEEAKLAKE MHGKLAC RPLVVRLASEK ++
Sbjct: 40  IVSEDFLWHTRGPKRGAPRGFAFVQYSTKEEAKLAKEKMHGKLACGRPLVVRLASEKYLV 99

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG 160
                    +  GE++K+  SGSN G MSR  KIAAI+NKL+ALE  E E SG KKQK G
Sbjct: 100 E--TAEKSSKGMGESNKTSLSGSNSGQMSRGAKIAAIRNKLKALE--EEESSGGKKQKLG 155

[Close]

BLAST of Carg08400 vs. TrEMBL
Match: tr|A0A067JEG3|A0A067JEG3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26067 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 83/119 (69.75%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 41  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI 100
           I+SEDFLWHTRGPKRGEPRGFAFI++S+KEEAKLAKE MHGKLAC RPLVVRLASEK + 
Sbjct: 39  IVSEDFLWHTRGPKRGEPRGFAFIQFSTKEEAKLAKEKMHGKLACGRPLVVRLASEKCM- 98

Query: 101 NXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQ 160
                    RA GE +K+   G   G MSRS KIAAIKNKLRAL   E E S VKKQKQ
Sbjct: 99  -EEVAQNSSRAVGEMNKTGIVGGTSGQMSRSAKIAAIKNKLRAL---EEEGSSVKKQKQ 152

[Close]

BLAST of Carg08400 vs. TrEMBL
Match: tr|A0A061G0D7|A0A061G0D7_THECC (RNA recognition motif and CCHC-type zinc finger domains containing protein OS=Theobroma cacao OX=3641 GN=TCM_015236 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 85/137 (62.04%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 28  VELNLLIGSLMVM------IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHG 87
           ++L +  G+L+ M      IISEDFLWHTRGPKRGEPRGFAFI+YS KEEAKLAKE MHG
Sbjct: 20  LDLRITEGALIKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSMKEEAKLAKEKMHG 79

Query: 88  KLACSRPLVVRLASEKLVINXXXXXXXXRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKL 147
           +LAC RPLVVRLASEK +          +A GE  KS  +GS  G MSRS KIAAIKNKL
Sbjct: 80  RLACGRPLVVRLASEKYL--EEAAHNSSKAGGEAIKSGTAGSTSGQMSRSAKIAAIKNKL 139

Query: 148 RALEGGEGERSGVKKQK 159
           +AL   + ER   KKQK
Sbjct: 140 KAL---DEERGSAKKQK 151

The following BLAST results are available for this feature:

BLAST of Carg08400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958046.1	1.1e-52	99.17	probable RNA-binding protein 18 isoform X2 [Cucurbita moschata]	[more]
XP_022958043.1	1.1e-52	99.17	probable RNA-binding protein 18 isoform X1 [Cucurbita moschata] >XP_022958045.1 ...	[more]
XP_022958047.1	1.1e-52	99.17	probable RNA-binding protein 18 isoform X3 [Cucurbita moschata]	[more]
XP_023534515.1	3.5e-49	95.00	probable RNA-binding protein 18 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023534514.1	3.5e-49	95.00	probable RNA-binding protein 18 isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]

BLAST of Carg08400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52545.1	7.7e-11	51.85	unknown protein	[more]
AT1G71770.1	1.4e-04	48.84	poly(A)-binding protein 5	[more]
AT3G16380.1	9.2e-04	36.84	poly(A) binding protein 6	[more]

BLAST of Carg08400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6PBM8\|RBM18_DANRE	1.7e-07	36.70	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
sp\|Q66J99\|RBM18_XENLA	2.2e-07	36.27	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]
sp\|Q3ZCC5\|RBM18_BOVIN	5.0e-07	35.29	Probable RNA-binding protein 18 OS=Bos taurus OX=9913 GN=RBM18 PE=2 SV=1	[more]
sp\|Q96H35\|RBM18_HUMAN	5.0e-07	35.29	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
sp\|Q9CR83\|RBM18_MOUSE	5.0e-07	35.29	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]

BLAST of Carg08400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATX2\|A0A1S3ATX2_CUCME	5.6e-40	78.15	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]
tr\|A0A0A0KJM9\|A0A0A0KJM9_CUCSA	2.1e-39	78.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV=1	[more]
tr\|A0A2I4G3Z0\|A0A2I4G3Z0_9ROSI	3.9e-33	67.50	probable RNA-binding protein 18 isoform X1 OS=Juglans regia OX=51240 GN=LOC10900...	[more]
tr\|A0A067JEG3\|A0A067JEG3_JATCU	2.5e-32	69.75	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26067 PE=4 SV=1	[more]
tr\|A0A061G0D7\|A0A061G0D7_THECC	3.3e-32	62.04	RNA recognition motif and CCHC-type zinc finger domains containing protein OS=Th...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08400-RA	Carg08400-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 36..158 e-value: 7.2E-11 score: 44.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 54..89 e-value: 1.7E-6 score: 27.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 29..96 score: 9.695
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..128
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 41..147
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 51..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08400	Cla004944	Watermelon (97103) v1	carwmB0711
Carg08400	Csa5G140500	Cucumber (Chinese Long) v2	carcuB0732
Carg08400	MELO3C005836	Melon (DHL92) v3.5.1	carmeB0707
Carg08400	ClCG01G000950	Watermelon (Charleston Gray)	carwcgB0687
Carg08400	CSPI05G03740	Wild cucumber (PI 183967)	carcpiB0748
Carg08400	Cucsa.193000	Cucumber (Gy14) v1	carcgyB0799
Carg08400	CmaCh02G010780	Cucurbita maxima (Rimu)	carcmaB0999
Carg08400	CmoCh02G010950	Cucurbita moschata (Rifu)	carcmoB0971
Carg08400	Lsi09G000820	Bottle gourd (USVL1VR-Ls)	carlsiB647
Carg08400	Cp4.1LG05g06510	Cucurbita pepo (Zucchini)	carcpeB1002
Carg08400	CsGy5G000950	Cucumber (Gy14) v2	carcgybB0710
Carg08400	MELO3C005837.2	Melon (DHL92) v3.6.1	carmedB0720
Carg08400	CsaV3_5G001090	Cucumber (Chinese Long) v3	carcucB0751
Carg08400	Cla97C01G001020	Watermelon (97103) v2	carwmbB0740
Carg08400	Bhi12G000683	Wax gourd	carwgoB0832

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08400	Melon (DHL92) v3.6.1	carmedB0722
Carg08400	Watermelon (Charleston Gray)	carwcgB0690
Carg08400	Watermelon (97103) v1	carwmB0708
Carg08400	Watermelon (97103) v2	carwmbB0743
Carg08400	Silver-seed gourd	carcarB505
Carg08400	Silver-seed gourd	carcarB583
Carg08400	Silver-seed gourd	carcarB585
Carg08400	Cucumber (Gy14) v2	carcgybB0707
Carg08400	Cucumber (Gy14) v1	carcgyB0794
Carg08400	Cucurbita maxima (Rimu)	carcmaB0992
Carg08400	Cucurbita maxima (Rimu)	carcmaB0994
Carg08400	Cucurbita maxima (Rimu)	carcmaB0996
Carg08400	Cucurbita moschata (Rifu)	carcmoB0964
Carg08400	Cucurbita moschata (Rifu)	carcmoB0966
Carg08400	Cucurbita moschata (Rifu)	carcmoB0968
Carg08400	Cucurbita pepo (Zucchini)	carcpeB0994
Carg08400	Cucurbita pepo (Zucchini)	carcpeB0997
Carg08400	Cucurbita pepo (Zucchini)	carcpeB0998
Carg08400	Wild cucumber (PI 183967)	carcpiB0745
Carg08400	Cucumber (Chinese Long) v2	carcuB0730
Carg08400	Cucumber (Chinese Long) v3	carcucB0748
Carg08400	Bottle gourd (USVL1VR-Ls)	carlsiB650
Carg08400	Melon (DHL92) v3.5.1	carmeB0709