Carg08249 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08249
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At1g09900
Location	Cucurbita_argyrosperma_scaffold_015 : 394633 .. 396441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATAACGTTACATGCAAAGCATTACACGGATGGATTCTGTTTGTTTCAGCGTCGCAGCACCAAAAATCGCGGCCGTAAAGTTAGGGCCGAAAGAAGGGCTACTCCGGAGACCAATTCTGTAAGTTTTTTTGTGGGAGGAAAGGGGAAACCTCGATTTCTTGTTGTTCCTTCTGATTGTTCTGAAGAATCCTTTGTTCGTGCGGTTCTGAAGAATCCTTCGCAACAGGGGGAGAAAAATGTTCATACCCATTTGAATGGCTCTAGTTCTTCATCATTGTCTTCGAATCATTCGCAGAGTTTTGAGGAATTTGAGAACAATAATCATCTTCGTCGACTGGTAAGAAATGGGGAATTGGAAGAAGGGTTTAAATTCATAGAGGGTATGGTTTATCGTGGTGATATTCCTGATGCAATTGTGTGTACTAGTTTGATTCGTGGTTTGTGTAAAACTGGAAAAACTAGGAAGGCTGCTCGAGTTATGGAAATTTTGGAGGATTCTGGGGCTGTTCCTGATGTGATAACTTACAATGTTCTTATTAGTGGTTACTGTAAATCTGGTGAAATTGACAATGCTTTGAAACTTTTGGATCGAATGAGTATTTCTCCTGATGTTATTACTTATAATATAATCTTGCGTACGCTCTGTGACAGTGGGAAGTTGAAGGAAGCCATGGAAGTTCTTCATAGACAGTTGCAGAGGGAGTGTTATCCAGATGTAATAACTTATACTATATTGATTGAAGCAACTTGTAAGGAGAGTGGAGTTGGGCAGGCGATGAAATTGTTGGATGAAATGAGGGAGAAAGGATGTAAGCCTGATGTTGTCACTTACAATGTTCTTATAAATGGGATTTGTAAGGAAGGAAGGTTGGATGAAGCTATTGAGTTTTTGAATGAAATGTCTTCCTATGGCTGCCAACCTAATGTGATTACTCATAACATCATCTTGCGTAGTATGTGTAGTACGGGGAGGTGGACGGATGCCGAGAAGCTGTTGGCTGAAATGGTTCGTAAGGGATGTTCTCCTAGTGTTGTTACTTTCAATATCTTGATTAATTTCTTGTGCCGAAAGGGGTTGTTGGGTCGAGCTATTGATATTTTGGAGAAGATGCCACAGCATGGCTGTACTCCGAATTCCTCGAGCTATAACCCGTTGCTTCATGGGTTCTGTAAAGAGAAGAAGATGGAGCGGGCGATCGAGTATTTGGATATCATGGCTTCGAGAGGTTGTTACCCTGATATTGTGACGTATAATACTCTATTGACTGCATTGTGTAAAGATGGGAAGGTAGATGTTGCTGTTGAGATACTGAATCAACTTGGTACTAAAGGTTGCTCTCCTGTATTGATTACTTACAACACAGTGATTGATGGGCTATCAAAGGCAGGCAAAACGGAAGATGCTGTTAAACTTCTAGACGAGATGAAGGAGAAGGGACTCAAACCTGATATAATTACGTACTCGTCGCTCGTTGGAGGGCTGTGCAGAGAAGGAAAAGTTGATGAAGCAATTGCATTTTTCCATGATCTAGAAGAAGTTGGTGTGAGGCCAAATGTTATCACATACAACTCTATCATGTTAGGACTCTGTAAGGTTCAACAAACGGTTCGTGCCATCGATTTCTTGGCATCGATGGTTGCCAGAGGCTGTAAACCGAACGAGGCTTCCTACATGATTCTTATTGAAGGGTTGGCCTATGAAGGTTTAGCCAAAGAGGCATTGGAGTTGCTTGATGAATTGTGCTCTAGAGGAGTTATGAAGAAGAGTTCTGCAGAGAGGGTAGTGATCAAAAACTCTTTTTGA

mRNA sequence

ATGGATATAACGTTACATGCAAAGCATTACACGGATGGATTCTGTTTGTTTCAGCGTCGCAGCACCAAAAATCGCGGCCGTAAAGTTAGGGCCGAAAGAAGGGCTACTCCGGAGACCAATTCTGTAAGTTTTTTTGTGGGAGGAAAGGGGAAACCTCGATTTCTTGTTGTTCCTTCTGATTGTTCTGAAGAATCCTTTGTTCGTGCGGTTCTGAAGAATCCTTCGCAACAGGGGGAGAAAAATGTTCATACCCATTTGAATGGCTCTAGTTCTTCATCATTGTCTTCGAATCATTCGCAGAGTTTTGAGGAATTTGAGAACAATAATCATCTTCGTCGACTGGTAAGAAATGGGGAATTGGAAGAAGGGTTTAAATTCATAGAGGGTATGGTTTATCGTGGTGATATTCCTGATGCAATTGTGTGTACTAGTTTGATTCGTGGTTTGTGTAAAACTGGAAAAACTAGGAAGGCTGCTCGAGTTATGGAAATTTTGGAGGATTCTGGGGCTGTTCCTGATGTGATAACTTACAATGTTCTTATTAGTGGTTACTGTAAATCTGGTGAAATTGACAATGCTTTGAAACTTTTGGATCGAATGAGTATTTCTCCTGATGTTATTACTTATAATATAATCTTGCGTACGCTCTGTGACAGTGGGAAGTTGAAGGAAGCCATGGAAGTTCTTCATAGACAGTTGCAGAGGGAGTGTTATCCAGATGTAATAACTTATACTATATTGATTGAAGCAACTTGTAAGGAGAGTGGAGTTGGGCAGGCGATGAAATTGTTGGATGAAATGAGGGAGAAAGGATGTAAGCCTGATGTTGTCACTTACAATGTTCTTATAAATGGGATTTGTAAGGAAGGAAGGTTGGATGAAGCTATTGAGTTTTTGAATGAAATGTCTTCCTATGGCTGCCAACCTAATGTGATTACTCATAACATCATCTTGCGTAGTATGTGTAGTACGGGGAGGTGGACGGATGCCGAGAAGCTGTTGGCTGAAATGGTTCGTAAGGGATGTTCTCCTAGTGTTGTTACTTTCAATATCTTGATTAATTTCTTGTGCCGAAAGGGGTTGTTGGGTCGAGCTATTGATATTTTGGAGAAGATGCCACAGCATGGCTGTACTCCGAATTCCTCGAGCTATAACCCGTTGCTTCATGGGTTCTGTAAAGAGAAGAAGATGGAGCGGGCGATCGAGTATTTGGATATCATGGCTTCGAGAGACGAGATGAAGGAGAAGGGACTCAAACCTGATATAATTACGTACTCGTCGCTCGTTGGAGGGCTGTGCAGAGAAGGAAAAGTTGATGAAGCAATTGCATTTTTCCATGATCTAGAAGAAGTTGGTGTGAGGCCAAATGTTATCACATACAACTCTATCATGTTAGGACTCTGTAAGGTTCAACAAACGGTTCGTGCCATCGATTTCTTGGCATCGATGGTTGCCAGAGGCTGTAAACCGAACGAGGCTTCCTACATGATTCTTATTGAAGGGTTGGCCTATGAAGGTTTAGCCAAAGAGGCATTGGAGTTGCTTGATGAATTGTGCTCTAGAGGAGTTATGAAGAAGAGTTCTGCAGAGAGGGTAGTGATCAAAAACTCTTTTTGA

Coding sequence (CDS)

ATGGATATAACGTTACATGCAAAGCATTACACGGATGGATTCTGTTTGTTTCAGCGTCGCAGCACCAAAAATCGCGGCCGTAAAGTTAGGGCCGAAAGAAGGGCTACTCCGGAGACCAATTCTGTAAGTTTTTTTGTGGGAGGAAAGGGGAAACCTCGATTTCTTGTTGTTCCTTCTGATTGTTCTGAAGAATCCTTTGTTCGTGCGGTTCTGAAGAATCCTTCGCAACAGGGGGAGAAAAATGTTCATACCCATTTGAATGGCTCTAGTTCTTCATCATTGTCTTCGAATCATTCGCAGAGTTTTGAGGAATTTGAGAACAATAATCATCTTCGTCGACTGGTAAGAAATGGGGAATTGGAAGAAGGGTTTAAATTCATAGAGGGTATGGTTTATCGTGGTGATATTCCTGATGCAATTGTGTGTACTAGTTTGATTCGTGGTTTGTGTAAAACTGGAAAAACTAGGAAGGCTGCTCGAGTTATGGAAATTTTGGAGGATTCTGGGGCTGTTCCTGATGTGATAACTTACAATGTTCTTATTAGTGGTTACTGTAAATCTGGTGAAATTGACAATGCTTTGAAACTTTTGGATCGAATGAGTATTTCTCCTGATGTTATTACTTATAATATAATCTTGCGTACGCTCTGTGACAGTGGGAAGTTGAAGGAAGCCATGGAAGTTCTTCATAGACAGTTGCAGAGGGAGTGTTATCCAGATGTAATAACTTATACTATATTGATTGAAGCAACTTGTAAGGAGAGTGGAGTTGGGCAGGCGATGAAATTGTTGGATGAAATGAGGGAGAAAGGATGTAAGCCTGATGTTGTCACTTACAATGTTCTTATAAATGGGATTTGTAAGGAAGGAAGGTTGGATGAAGCTATTGAGTTTTTGAATGAAATGTCTTCCTATGGCTGCCAACCTAATGTGATTACTCATAACATCATCTTGCGTAGTATGTGTAGTACGGGGAGGTGGACGGATGCCGAGAAGCTGTTGGCTGAAATGGTTCGTAAGGGATGTTCTCCTAGTGTTGTTACTTTCAATATCTTGATTAATTTCTTGTGCCGAAAGGGGTTGTTGGGTCGAGCTATTGATATTTTGGAGAAGATGCCACAGCATGGCTGTACTCCGAATTCCTCGAGCTATAACCCGTTGCTTCATGGGTTCTGTAAAGAGAAGAAGATGGAGCGGGCGATCGAGTATTTGGATATCATGGCTTCGAGAGACGAGATGAAGGAGAAGGGACTCAAACCTGATATAATTACGTACTCGTCGCTCGTTGGAGGGCTGTGCAGAGAAGGAAAAGTTGATGAAGCAATTGCATTTTTCCATGATCTAGAAGAAGTTGGTGTGAGGCCAAATGTTATCACATACAACTCTATCATGTTAGGACTCTGTAAGGTTCAACAAACGGTTCGTGCCATCGATTTCTTGGCATCGATGGTTGCCAGAGGCTGTAAACCGAACGAGGCTTCCTACATGATTCTTATTGAAGGGTTGGCCTATGAAGGTTTAGCCAAAGAGGCATTGGAGTTGCTTGATGAATTGTGCTCTAGAGGAGTTATGAAGAAGAGTTCTGCAGAGAGGGTAGTGATCAAAAACTCTTTTTGA

Protein sequence

MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSDCSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSSNHSQSFEEFENNNHLRRLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSLIRGLCKTGKTRKAARVMEILEDSGAVPDVITYNVLISGYCKSGEIDNALKLLDRMSISPDVITYNIILRTLCDSGKLKEAMEVLHRQLQRECYPDVITYTILIEATCKESGVGQAMKLLDEMREKGCKPDVVTYNVLINGICKEGRLDEAIEFLNEMSSYGCQPNVITHNIILRSMCSTGRWTDAEKLLAEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCTPNSSSYNPLLHGFCKEKKMERAIEYLDIMASRDEMKEKGLKPDIITYSSLVGGLCREGKVDEAIAFFHDLEEVGVRPNVITYNSIMLGLCKVQQTVRAIDFLASMVARGCKPNEASYMILIEGLAYEGLAKEALELLDELCSRGVMKKSSAERVVIKNSF

Homology

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BLAST of Carg08249 vs. NCBI nr
Match: XP_022961919.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata])

HSP 1 Score: 288.5 bits (737), Expect = 4.7e-74
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60
           MDITLHAKHYTDGFCLFQRRSTKNRGR VRAERRATPETNSVSFFVGGKGKPRFLVVPSD
Sbjct: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRNVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60

Query: 61  CSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSSNHSQSFEEFENNNHLRRLVRNGEL 120
           CSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSS SSNHSQSFEEFENNNHLRRLVRNGEL
Sbjct: 61  CSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSFSSNHSQSFEEFENNNHLRRLVRNGEL 120

Query: 121 EEGFKFIEGMVYRGDIPDAIVCTSL 146
           EEGFKFIEGMVYRGDIPDAIVCTSL
Sbjct: 121 EEGFKFIEGMVYRGDIPDAIVCTSL 145

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BLAST of Carg08249 vs. NCBI nr
Match: XP_023546483.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp. pepo] >XP_023546485.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp. pepo] >XP_023546486.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp. pepo] >XP_023546487.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.6 bits (732), Expect = 1.8e-73
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60
           MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPE NSVSFFVGGKGKPRFLV+PSD
Sbjct: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPEINSVSFFVGGKGKPRFLVIPSD 60

Query: 61  CSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSSNHSQSFEEFENNNHLRRLVRNGEL 120
           CSEESFVRAVLKNPSQQGEKN+HTHLNGSSSSS SSNHSQSFEEFENNNHLRRLVRNGEL
Sbjct: 61  CSEESFVRAVLKNPSQQGEKNLHTHLNGSSSSSFSSNHSQSFEEFENNNHLRRLVRNGEL 120

Query: 121 EEGFKFIEGMVYRGDIPDAIVCTSL 146
           EEGFKFIEGMVYRGDIPDAIVCTSL
Sbjct: 121 EEGFKFIEGMVYRGDIPDAIVCTSL 145

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BLAST of Carg08249 vs. NCBI nr
Match: XP_022997085.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997086.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997087.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997088.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997089.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997090.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997091.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022997092.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 1.4e-70
Identity = 137/145 (94.48%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60
           MDITLHAKHYTDGFCLFQRRSTKN  R VRAERRATPETNSVSF VGGKGKPRFLV+PSD
Sbjct: 1   MDITLHAKHYTDGFCLFQRRSTKNSSRNVRAERRATPETNSVSFSVGGKGKPRFLVIPSD 60

Query: 61  CSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSSNHSQSFEEFENNNHLRRLVRNGEL 120
           CSEESFVRAVLKNP QQGEKN+HTHLNGSSSSS SSNHSQSFEEFENNNHLRRLVRNGEL
Sbjct: 61  CSEESFVRAVLKNPLQQGEKNLHTHLNGSSSSSFSSNHSQSFEEFENNNHLRRLVRNGEL 120

Query: 121 EEGFKFIEGMVYRGDIPDAIVCTSL 146
           EEGFKFIEGMVYRGDIPDAIVCTSL
Sbjct: 121 EEGFKFIEGMVYRGDIPDAIVCTSL 145

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BLAST of Carg08249 vs. NCBI nr
Match: XP_022132179.1 (pentatricopeptide repeat-containing protein At1g09900 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 3.2e-38
Identity = 96/165 (58.18%), Postives = 107/165 (64.85%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVV-PS 60
           MD+TL AKHYTDGFCLFQR+ST+NRGRKVRA  R T E NS+  +VGGKGK RFLVV PS
Sbjct: 1   MDVTLPAKHYTDGFCLFQRQSTRNRGRKVRAGGRVTSEANSLRLYVGGKGKARFLVVPPS 60

Query: 61  DCS------------EESFVRAVLKNPS-------QQGEKNVHTHLNGSSSSSLSSNHSQ 120
           DCS            + S VRA+ +  +       Q GEKN+H HLNGS           
Sbjct: 61  DCSVYGEKSHDLISKQLSIVRAISRVDTFSSNGRLQHGEKNLHGHLNGSXXXXXXXXXXX 120

Query: 121 SFEEFENNNHLRRLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSL 146
                 NNNHLRRLVRNGELEEGFKF+E MV  GDIPD I CTSL
Sbjct: 121 XXXXXXNNNHLRRLVRNGELEEGFKFVENMVCHGDIPDIIACTSL 165

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BLAST of Carg08249 vs. NCBI nr
Match: XP_022951268.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata])

HSP 1 Score: 169.5 bits (428), Expect = 3.2e-38
Identity = 93/154 (60.39%), Postives = 111/154 (72.08%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60
           MD+TL AK+YTDGFCLFQR S K RGR+VRA++  T E NS+   VG KGK RFLV+PSD
Sbjct: 1   MDLTLPAKNYTDGFCLFQRHSAKIRGREVRAKQLVTSEANSLRLHVGAKGKSRFLVIPSD 60

Query: 61  CSEE---------SFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSSNHSQSFEEFENNNHL 120
            SEE         + VRAV +  + + +   H HLNG++SSS +SNHSQSFE FENNNHL
Sbjct: 61  DSEEPISSITKHLNIVRAVSRVDTLRLQ---HGHLNGANSSSSASNHSQSFEGFENNNHL 120

Query: 121 RRLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSL 146
           R LVRNGELE GFKF+E M +RG+IPD   CT L
Sbjct: 121 RLLVRNGELENGFKFLEDMFFRGEIPDINACTIL 151

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BLAST of Carg08249 vs. TAIR10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-15
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQR-RSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPS 60
           MD+ +      +GFCL Q+      RG K+    R +   +S    +G + + R ++V +
Sbjct: 1   MDLMVSTSSAQEGFCLIQQFHREYKRGNKLDVSCRTSGSISS-KIPLGSRKRNRLVLVSA 60

Query: 61  DCSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSS-NHSQSFEEFENNNHLRRLVRNG 120
               ES   + L   +Q+ E     + N + +   SS N S + E+ E+NNHLR++VR G
Sbjct: 61  ASKVES---SGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTG 120

Query: 121 ELEEGFKFIEGMVYRGDIPDAIVCTSL 146
           ELEEGFKF+E MVY G++PD I CT+L
Sbjct: 121 ELEEGFKFLENMVYHGNVPDIIPCTTL 143

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BLAST of Carg08249 vs. Swiss-Prot
Match: sp|Q3EDF8|PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-14
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQR-RSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPS 60
           MD+ +      +GFCL Q+      RG K+    R +   +S    +G + + R ++V +
Sbjct: 1   MDLMVSTSSAQEGFCLIQQFHREYKRGNKLDVSCRTSGSISS-KIPLGSRKRNRLVLVSA 60

Query: 61  DCSEESFVRAVLKNPSQQGEKNVHTHLNGSSSSSLSS-NHSQSFEEFENNNHLRRLVRNG 120
               ES   + L   +Q+ E     + N + +   SS N S + E+ E+NNHLR++VR G
Sbjct: 61  ASKVES---SGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTG 120

Query: 121 ELEEGFKFIEGMVYRGDIPDAIVCTSL 146
           ELEEGFKF+E MVY G++PD I CT+L
Sbjct: 121 ELEEGFKFLENMVYHGNVPDIIPCTTL 143

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BLAST of Carg08249 vs. TrEMBL
Match: tr|A0A1S3BB35|A0A1S3BB35_CUCME (pentatricopeptide repeat-containing protein At1g09900 OS=Cucumis melo OX=3656 GN=LOC103488143 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-32
Identity = 85/153 (55.56%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60
           MD+TL AKHYTDGFCLF R +TKNR R+V A+ R + ETNS+   VG KGK RF V+PS 
Sbjct: 1   MDLTLPAKHYTDGFCLFHRHTTKNRDRRVTAKGRVSSETNSLRLHVGEKGKHRFFVIPSY 60

Query: 61  CSEESFVRAVLKNPS-------QQGEKNVHTHLNG-SSSSSLSSNHSQSFEEFENNNHLR 120
            S+E  VRAV +  +         GEKN+HTHLNG                       LR
Sbjct: 61  GSDEQLVRAVPRVDTFSSNGRLPHGEKNLHTHLNGXXXXXXXXXXXXXXXXXXXXXXXLR 120

Query: 121 RLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSL 146
           RLVRNGELEEGFKF+E MVYRGDIPD I CTSL
Sbjct: 121 RLVRNGELEEGFKFLEDMVYRGDIPDIIACTSL 153

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BLAST of Carg08249 vs. TrEMBL
Match: tr|A0A0A0LP07|A0A0A0LP07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372160 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.8e-29
Identity = 82/153 (53.59%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVVPSD 60
           MD+TL AKHYTDGFCLF R + KNR R+V A+ R + ETNS+    G KG  RF V+PS 
Sbjct: 1   MDLTLPAKHYTDGFCLFHRHTAKNRDRRVMAKGRVSSETNSLRLHAGEKG--RFFVIPSY 60

Query: 61  CSEESFVRAVLKNPS-------QQGEKNVHTHLNG-SSSSSLSSNHSQSFEEFENNNHLR 120
            SEE  VRAV +  +         GEKN+HTHLNG                       LR
Sbjct: 61  GSEEQLVRAVPRVDTFSSNGRLSHGEKNLHTHLNGXXXXXXXXXXXXXXXXXXXXXXXLR 120

Query: 121 RLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSL 146
           RLVRNGELEEGFKF+E MV RGDIPD I CTSL
Sbjct: 121 RLVRNGELEEGFKFLEDMVCRGDIPDIIACTSL 151

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BLAST of Carg08249 vs. TrEMBL
Match: tr|A0A059BRH4|A0A059BRH4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02164 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-19
Identity = 71/169 (42.01%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQ---RRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVV 60
           MD+ + AKH  DGFC F    R S ++ G K     RA+ ++N       G G+ R +V+
Sbjct: 1   MDLAVPAKHTHDGFCSFHQFPRESRRDSGSKWSV--RASSDSNLGRVKAFGDGRARLIVL 60

Query: 61  PSD------------CSEES----FVRAVLKNPSQQGEKNV-----HTHLNGSSSSSLSS 120
             D            C  +     F  + ++     G  ++       ++NG SSS ++S
Sbjct: 61  SVDGVGSRGFGVSEGCRRQRLDCVFAVSRVEMLDSNGRSSILAKTPRGYINGRSSSLVTS 120

Query: 121 NHSQSFEEFENNNHLRRLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSL 146
             S S EEFE+NNHLRRLVRNGELEEGFKF+E MVYRGDIPD I CTSL
Sbjct: 121 --SSSLEEFESNNHLRRLVRNGELEEGFKFLENMVYRGDIPDVIACTSL 165

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BLAST of Carg08249 vs. TrEMBL
Match: tr|A0A2P4K6E1|A0A2P4K6E1_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_72755 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-18
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCLFQRRSTKNRGRKVR--AERRATPETNSVSFFVGGKGKPRFLVVP 60
           MD  +H  H  +GFC F     K  G  +   A  R    + S    V    K R LV+ 
Sbjct: 129 MDFMVHTNHAPEGFCSFPDFHVKGPGNVISFGARFRGRVGSKSREMIVHMSCKHRLLVLS 188

Query: 61  SDCSEES-----FVRAVLKNPSQQG-----EKNVHTHLNGSSSSSLSSNHSQSFEEFENN 120
                +      F  + ++N S  G     E+  H HL+ + S S++++ S++FEEFE+N
Sbjct: 189 GLWPRKQRRNCVFAVSRVENFSSNGRLQHIEQIPHGHLDDAESLSVNAHSSRNFEEFESN 248

Query: 121 NHLRRLVRNGELEEGFKFIEGMVYRGDIPDAIVCTSL 146
           NHLR+LVRNGELEEGFK++E MV RGDIPD I CTSL
Sbjct: 249 NHLRKLVRNGELEEGFKYLESMVNRGDIPDIIACTSL 285

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BLAST of Carg08249 vs. TrEMBL
Match: tr|A0A2N9FYM8|A0A2N9FYM8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20117 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-17
Identity = 67/153 (43.79%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 1   MDITLHAKHYTDGFCL---FQRRSTKNRGRKVRAERRATPETNSVSFFVGGKGKPRFLVV 60
           MD  +H KH  +GFC    F+ +  +N      A  R    + S S  V    K   LV+
Sbjct: 1   MDFMVHTKHAPEGFCSFPDFRVKGNRNVNSTSGARFRGKVGSKSRSVIVHMGCKASLLVL 60

Query: 61  PSD---CSEESFVRAVLKNPS-------QQGEKNVHTHLNGSSSSSLSSNHSQSFEEFEN 120
           P         + V AV K  S       Q  E+  H HL+G+ SSS++++ S SFEEFE 
Sbjct: 61  PGPRPRKQRRNCVFAVSKVESFSSNGKMQHTEQIPHGHLDGTESSSVTNHSSHSFEEFEC 120

Query: 121 NNHLRRLVRNGELEEGFKFIEGMVYRGDIPDAI 141
           NNHLR+LVRNGELEEGFKF+E MV +GDIPD I
Sbjct: 121 NNHLRKLVRNGELEEGFKFLESMVNQGDIPDVI 153

The following BLAST results are available for this feature:

BLAST of Carg08249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961919.1	4.7e-74	98.62	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata]	[more]
XP_023546483.1	1.8e-73	97.24	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp...	[more]
XP_022997085.1	1.4e-70	94.48	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >X...	[more]
XP_022132179.1	3.2e-38	58.18	pentatricopeptide repeat-containing protein At1g09900 [Momordica charantia]	[more]
XP_022951268.1	3.2e-38	60.39	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita moschata]	[more]

BLAST of Carg08249 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09900.1	2.1e-15	36.73	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Carg08249 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3EDF8\|PPR28_ARATH	3.7e-14	36.73	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg08249 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BB35\|A0A1S3BB35_CUCME	2.9e-32	55.56	pentatricopeptide repeat-containing protein At1g09900 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LP07\|A0A0A0LP07_CUCSA	8.8e-29	53.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372160 PE=4 SV=1	[more]
tr\|A0A059BRH4\|A0A059BRH4_EUCGR	4.9e-19	42.01	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02164 PE=4 SV...	[more]
tr\|A0A2P4K6E1\|A0A2P4K6E1_QUESU	7.0e-18	41.40	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_7...	[more]
tr\|A0A2N9FYM8\|A0A2N9FYM8_FAGSY	3.5e-17	43.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20117 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08249-RA	Carg08249-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 423..457 e-value: 2.3E-8 score: 31.7 coord: 207..241 e-value: 9.9E-7 score: 26.6 coord: 242..276 e-value: 2.2E-7 score: 28.6 coord: 383..410 e-value: 6.2E-5 score: 20.9 coord: 458..492 e-value: 1.8E-7 score: 28.9 coord: 277..311 e-value: 7.4E-12 score: 42.7 coord: 347..380 e-value: 8.0E-8 score: 30.0 coord: 141..174 e-value: 2.1E-5 score: 22.4 coord: 175..201 e-value: 7.0E-8 score: 30.2 coord: 312..346 e-value: 2.1E-9 score: 34.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 421..469 e-value: 1.8E-13 score: 50.3 coord: 344..393 e-value: 6.3E-15 score: 55.0 coord: 274..323 e-value: 4.7E-19 score: 68.2 coord: 204..253 e-value: 2.0E-13 score: 50.2
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 169..201 e-value: 2.4E-14 score: 52.6 coord: 486..517 e-value: 7.9E-6 score: 25.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 421..455 score: 13.241
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 205..239 score: 11.641
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 345..379 score: 12.244
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 456..490 score: 11.17
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 310..344 score: 12.77
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 240..274 score: 12.573
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 380..414 score: 9.635
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 103..137 score: 6.818
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 173..203 score: 11.707
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 138..172 score: 10.786
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 491..525 score: 9.449
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 275..309 score: 14.82
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 411..537 e-value: 2.0E-33 score: 118.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 201..268 e-value: 1.4E-20 score: 75.6 coord: 269..339 e-value: 6.5E-27 score: 96.2 coord: 100..200 e-value: 8.1E-22 score: 79.6 coord: 340..410 e-value: 1.2E-21 score: 79.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..101
None	No IPR available	PANTHER	PTHR24015:SF358	SUBFAMILY NOT NAMED	coord: 455..524 coord: 71..410 coord: 411..465
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 455..524 coord: 71..410 coord: 411..465

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08249	Cla022172	Watermelon (97103) v1	carwmB0058
Carg08249	Csa2G372160	Cucumber (Chinese Long) v2	carcuB0059
Carg08249	MELO3C011106	Melon (DHL92) v3.5.1	carmeB0058
Carg08249	ClCG08G011830	Watermelon (Charleston Gray)	carwcgB0063
Carg08249	CSPI02G21810	Wild cucumber (PI 183967)	carcpiB0063
Carg08249	Cucsa.160800	Cucumber (Gy14) v1	carcgyB0066
Carg08249	CmaCh12G001840	Cucurbita maxima (Rimu)	carcmaB0078
Carg08249	CmaCh05G005600	Cucurbita maxima (Rimu)	carcmaB0083
Carg08249	CmoCh05G005860	Cucurbita moschata (Rifu)	carcmoB0087
Carg08249	Lsi08G010400	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08249	Cp4.1LG07g01540	Cucurbita pepo (Zucchini)	carcpeB0091
Carg08249	CsGy2G021530	Cucumber (Gy14) v2	carcgybB0060
Carg08249	MELO3C011106.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08249	CsaV3_2G030450	Cucumber (Chinese Long) v3	carcucB0065
Carg08249	Cla97C08G154930	Watermelon (97103) v2	carwmbB0061
Carg08249	Bhi04G000750	Wax gourd	carwgoB0068

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08249	Carg22527	Silver-seed gourd	carcarB069

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08249	Silver-seed gourd	carcarB064
Carg08249	Silver-seed gourd	carcarB066
Carg08249	Silver-seed gourd	carcarB070
Carg08249	Cucumber (Gy14) v2	carcgybB0063
Carg08249	Cucumber (Gy14) v1	carcgyB0065
Carg08249	Cucumber (Gy14) v1	carcgyB0067
Carg08249	Cucurbita maxima (Rimu)	carcmaB0071
Carg08249	Cucurbita maxima (Rimu)	carcmaB0074
Carg08249	Cucurbita maxima (Rimu)	carcmaB0082
Carg08249	Cucurbita maxima (Rimu)	carcmaB0084
Carg08249	Cucurbita moschata (Rifu)	carcmoB0078
Carg08249	Cucurbita moschata (Rifu)	carcmoB0075
Carg08249	Cucurbita moschata (Rifu)	carcmoB0082
Carg08249	Cucurbita moschata (Rifu)	carcmoB0086
Carg08249	Cucurbita moschata (Rifu)	carcmoB0088
Carg08249	Cucurbita pepo (Zucchini)	carcpeB0078
Carg08249	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08249	Cucurbita pepo (Zucchini)	carcpeB0081
Carg08249	Cucurbita pepo (Zucchini)	carcpeB0085
Carg08249	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08249	Wild cucumber (PI 183967)	carcpiB0065
Carg08249	Cucumber (Chinese Long) v2	carcuB0061
Carg08249	Cucumber (Chinese Long) v2	carcuB0063
Carg08249	Cucumber (Chinese Long) v3	carcucB0067
Carg08249	Cucumber (Chinese Long) v3	carcucB0069
Carg08249	Bottle gourd (USVL1VR-Ls)	carlsiB053
Carg08249	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08249	Melon (DHL92) v3.5.1	carmeB0063
Carg08249	Melon (DHL92) v3.6.1	carmedB0061
Carg08249	Melon (DHL92) v3.6.1	carmedB0063
Carg08249	Watermelon (Charleston Gray)	carwcgB0059
Carg08249	Watermelon (Charleston Gray)	carwcgB0061
Carg08249	Watermelon (97103) v1	carwmB0059
Carg08249	Watermelon (97103) v1	carwmB0060
Carg08249	Watermelon (97103) v2	carwmbB0056
Carg08249	Watermelon (97103) v2	carwmbB0057
Carg08249	Wax gourd	carwgoB0071
Carg08249	Wax gourd	carwgoB0072