Carg08230 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08230
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal RNA small subunit methyltransferase A
Location	Cucurbita_argyrosperma_scaffold_015 : 280780 .. 282758 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGGCATTTCCCCAGCTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGACAGCTTTTCTACTGGTAAGAGTTGTTTCTTCTCAAGCTTGCCTTTCGATTCGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATAATCTTCTAGTCCTCTTTCGTAAATAGTGAACTCAATAACTTCGTTCATTTCCTATGATAGTTTAATTTCATTGCCCACGATCGAACTTATAATGTACATCAGGTCCGTATTCCAAACAAGAAAAAACTTTTATGTAATTTAATTGTTATCTCATATTCATAGACCCTTAATTTTTTTAGGATGATTATACTATTTCCTTTTCTGAATCAGTCTCGGGAGTCATTGTGAGACTTCATCTCTAAGAAATATTACTTGACACATTCCCAATAGGATAATTATGCATTAGAAAGATATCGGCAAATCGAAGAACAACCGAAGGATCTATCTTTGTTTCCTAGAAAAGGGTGTCACCAGATCCTTGTTTGAATTTCTTGTAGCAGAGCTAACACAAATTTATGTAGTAAAGTGATGAGTAAAGATCTCTTGAATGATCGCTGCGATTTCTGGTGCAAGTAAAGAAACTCCAGACATGGAGGAGCCGTTAGTTAAAAGTGATTTTGATCATTGAAAACCAATCCAGTAGTTAAATCTATTCTCTATCTGTAAAACTGATTAAGCAAATAGGCTTAGAGCTGATACAATGACAAGTTTAGAATGATAGAATCAAACTAAACTTCTTTCAGTGTGGAAACTTTTCGAAACTTCTGTTCTGCTTTGATTTCGTACTGACTTCATATAGTATGATTGTTCTTCTGGCCAATGTGAACAATACTAAAATTGGTAGCACATGCGTTAATTTCTTTTTGGTTGCTTTATGTTTTGTTGTAAGCTGATTATGTCTGCACTTTTCCATGAAACAGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGATACACAGGATTTATAATGGTTGCACGCGGACGCTAATGCCTTGTTTCCAAGAAGAAAACAATTTGTGATCTTAAGCCATTTAAACATTAAAAAAAAAAATGAAAAAATAAAAAGAAAAAGATGATACAGGACTATCTATTCTGGCTTCGTTTGATTTACTGCTGGGAAGCAAATTGGATGAACAGATTGGATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAATTTATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAAATTGACCATGTTCTTAAGAAGAGAGAGGCCTAAATTATGACCTCATCTGTGTTGAAGCCTGTTAAAATGGGATGTAAATACTTTAGAGACTCCTATATGAATATGGAAGGGAGACAGGAGGAAGAAGGCTGAGCCAACCAGCTGGGGTTTGATGAAAAAGAATATTAAGGAGGTGCGAGTGCAAATGTCTTGTTATTCTTTGAAGTTCAGTTCAGTTCATGTATAAAGTGGGAAAGGTGTTTAGTTTAGTTCAGTTCAGTTCAGTTCAGTTCATCTGAAAGTTGCTGTAAAAGTGACTCATCTATGCATGCATCA

mRNA sequence

ATGTCTGTGGCATTTCCCCAGCTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGACAGCTTTTCTACTGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGATACACAGGATTTATAATGGTTGCACGCGGACGCTAATGCCTTGTTTCCAAGAAGAAAACAATTTGTGATCTTAAGCCATTTAAACATTAAAAAAAAAAATGAAAAAATAAAAAGAAAAAGATGATACAGGACTATCTATTCTGGCTTCGTTTGATTTACTGCTGGGAAGCAAATTGGATGAACAGATTGGATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAATTTATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAAATTGACCATGTTCTTAAGAAGAGAGAGGCCTAAATTATGACCTCATCTGTGTTGAAGCCTGTTAAAATGGGATGTAAATACTTTAGAGACTCCTATATGAATATGGAAGGGAGACAGGAGGAAGAAGGCTGAGCCAACCAGCTGGGGTTTGATGAAAAAGAATATTAAGGAGGTGCGAGTGCAAATGTCTTGTTATTCTTTGAAGTTCAGTTCAGTTCATGTATAAAGTGGGAAAGGTGTTTAGTTTAGTTCAGTTCAGTTCAGTTCAGTTCATCTGAAAGTTGCTGTAAAAGTGACTCATCTATGCATGCATCA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAGCTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGACAGCTTTTCTACTGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGA

Protein sequence

MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

Homology

[Close]

BLAST of Carg08230 vs. NCBI nr
Match: XP_022961803.1 (uncharacterized protein LOC111462457 isoform X2 [Cucurbita moschata])

HSP 1 Score: 347.4 bits (890), Expect = 2.7e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 172
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171

[Close]

BLAST of Carg08230 vs. NCBI nr
Match: XP_022997281.1 (uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima])

HSP 1 Score: 346.3 bits (887), Expect = 6.0e-92
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 172
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]

BLAST of Carg08230 vs. NCBI nr
Match: XP_023545352.1 (uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 3.9e-91
Identity = 168/171 (98.25%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 172
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]

BLAST of Carg08230 vs. NCBI nr
Match: XP_022961798.1 (uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_022961799.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_022961802.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata])

HSP 1 Score: 342.8 bits (878), Expect = 6.6e-91
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC 172
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSALQNC 172

[Close]

BLAST of Carg08230 vs. NCBI nr
Match: XP_022997278.1 (uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997279.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997280.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 1.5e-90
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC 172
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSSLQNC 172

[Close]

BLAST of Carg08230 vs. TAIR10
Match: AT4G38060.2 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNISDSFSTESKKYMEQWLSALQ 170
           +LSAV N+ +    + K YMEQWLS+LQ
Sbjct: 108 LLSAVKNLPNGLPPDGKNYMEQWLSSLQ 134

[Close]

BLAST of Carg08230 vs. TAIR10
Match: AT5G65480.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 51/173 (29.48%), Postives = 73/173 (42.20%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSG-----KHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISS 60
           M+V+FP+L  WL  G     + K+     G S+L+ SL                      
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSLKXXXXXXXXXXXXXXXXXXXG- 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDD 120
                   W  R       E D +      G +   E DD +WSIGW EPHGPGF+++DD
Sbjct: 61  --------WIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSAL 169
               F VLVP Y ++ +   ++        + N   S +    K MEQWLS++
Sbjct: 121 DCGGFVVLVPLYKKVMDGSGNQ--------IPNGFFSPAAPDGKNMEQWLSSM 150

[Close]

BLAST of Carg08230 vs. TrEMBL
Match: tr|A0A1S3BB05|A0A1S3BB05_CUCME (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 158/171 (92.40%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 172
           AVLVPCY RIYNDFVDETK S+LSA+GNI+DSFS ESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]

BLAST of Carg08230 vs. TrEMBL
Match: tr|A0A0A0LLD0|A0A0A0LLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370490 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 6.2e-77
Identity = 145/164 (88.41%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQW 165
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS         W
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAADYVCTSPW 164

[Close]

BLAST of Carg08230 vs. TrEMBL
Match: tr|A0A2P5BLU5|A0A2P5BLU5_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228150 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.1e-64
Identity = 124/171 (72.51%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           M+VAF  LSWWL SGKH+EP+ SN GS+L+++ D+   E+DTLKF LV  AN++SSSRRV
Sbjct: 1   MAVAFTNLSWWLWSGKHQEPRLSN-GSSLSSAPDSGTWESDTLKFPLVQRANVASSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYD+VLVPSDGGC+SGSESDDSDWS+GW EPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDVVLVPSDGGCVSGSESDDSDWSVGWLEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 172
           AVLVPCY R   + V +TK ++L+AVG I D +S ESKK +EQWLS+LQNC
Sbjct: 121 AVLVPCYGRGLEEMVADTKNNILNAVGIIPDVYSAESKKNLEQWLSSLQNC 170

[Close]

BLAST of Carg08230 vs. TrEMBL
Match: tr|A0A2P5F1E4|A0A2P5F1E4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_126460 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.5e-64
Identity = 124/171 (72.51%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           M+VAF  LSWWL SGKH+EP+ SN GS+LN++ D+   E+DTLKF LV  AN++SSSRRV
Sbjct: 1   MAVAFTNLSWWLWSGKHQEPRLSN-GSSLNSAPDSGTWESDTLKFPLVQRANVASSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKW SREERKIDREYD+VLVPSDGGC+SGSESDDSDWS+GW EPHGP FQSDDDSDNSF
Sbjct: 61  KRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDWSVGWLEPHGPAFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 172
           AVLVPCY R   + V++TK ++L+AVG I D +S ESKK MEQWLS+LQNC
Sbjct: 121 AVLVPCYGRGLEEMVEDTKNNILNAVGIIPDVYSAESKKNMEQWLSSLQNC 170

[Close]

BLAST of Carg08230 vs. TrEMBL
Match: tr|V4V532|V4V532_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002684mg PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 3.3e-62
Identity = 120/170 (70.59%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           M++AF  LSWWLRSGKH+EP+ SN GS+LN+S D+   E D LKF LV  AN++SSSR+V
Sbjct: 1   MALAFTNLSWWLRSGKHQEPKISN-GSSLNSSSDSGLWELDNLKFPLVGRANVASSSRKV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKW SREERKIDREYD+VLVPSDGGC+SGSESDDSD+S+GW EPHGPGFQSDDD+DNSF
Sbjct: 61  KRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQN 171
           AVLVPCY  + +D V+ T  + L A+ NI D++S ESKKYMEQWLS+LQN
Sbjct: 121 AVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169

The following BLAST results are available for this feature:

BLAST of Carg08230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961803.1	2.7e-92	100.00	uncharacterized protein LOC111462457 isoform X2 [Cucurbita moschata]	[more]
XP_022997281.1	6.0e-92	99.42	uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima]	[more]
XP_023545352.1	3.9e-91	98.25	uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022961798.1	6.6e-91	99.42	uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_0229617...	[more]
XP_022997278.1	1.5e-90	98.84	uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997279...	[more]

BLAST of Carg08230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38060.2	1.1e-15	48.86	unknown protein	[more]
AT5G65480.1	3.1e-10	29.48	unknown protein	[more]

BLAST of Carg08230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BB05\|A0A1S3BB05_CUCME	1.1e-86	92.40	uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=...	[more]
tr\|A0A0A0LLD0\|A0A0A0LLD0_CUCSA	6.2e-77	88.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370490 PE=4 SV=1	[more]
tr\|A0A2P5BLU5\|A0A2P5BLU5_PARAD	2.1e-64	72.51	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228150 PE...	[more]
tr\|A0A2P5F1E4\|A0A2P5F1E4_9ROSA	3.5e-64	72.51	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_126460 PE=4 S...	[more]
tr\|V4V532\|V4V532_9ROSI	3.3e-62	70.59	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002684mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08230-RA	Carg08230-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34464	FAMILY NOT NAMED	coord: 1..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08230	Cla022153	Watermelon (97103) v1	carwmB0058
Carg08230	Csa2G370490	Cucumber (Chinese Long) v2	carcuB0059
Carg08230	Csa6G498970	Cucumber (Chinese Long) v2	carcuB0063
Carg08230	MELO3C007713	Melon (DHL92) v3.5.1	carmeB0063
Carg08230	MELO3C011084	Melon (DHL92) v3.5.1	carmeB0058
Carg08230	ClCG01G018350	Watermelon (Charleston Gray)	carwcgB0061
Carg08230	ClCG08G011650	Watermelon (Charleston Gray)	carwcgB0063
Carg08230	CSPI06G29780	Wild cucumber (PI 183967)	carcpiB0067
Carg08230	CSPI02G21600	Wild cucumber (PI 183967)	carcpiB0063
Carg08230	Cucsa.103980	Cucumber (Gy14) v1	carcgyB0065
Carg08230	Cucsa.160580	Cucumber (Gy14) v1	carcgyB0066
Carg08230	CmaCh05G005410	Cucurbita maxima (Rimu)	carcmaB0083
Carg08230	CmaCh12G002020	Cucurbita maxima (Rimu)	carcmaB0078
Carg08230	CmaCh07G005730	Cucurbita maxima (Rimu)	carcmaB0084
Carg08230	CmoCh12G001560	Cucurbita moschata (Rifu)	carcmoB0078
Carg08230	CmoCh07G005800	Cucurbita moschata (Rifu)	carcmoB0088
Carg08230	CmoCh05G005670	Cucurbita moschata (Rifu)	carcmoB0087
Carg08230	Lsi01G008130	Bottle gourd (USVL1VR-Ls)	carlsiB053
Carg08230	Lsi08G010210	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08230	Cp4.1LG11g04810	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08230	Cp4.1LG07g01720	Cucurbita pepo (Zucchini)	carcpeB0091
Carg08230	CsGy6G029260	Cucumber (Gy14) v2	carcgybB0063
Carg08230	MELO3C007713.2	Melon (DHL92) v3.6.1	carmedB0063
Carg08230	MELO3C011084.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08230	CsaV3_6G044980	Cucumber (Chinese Long) v3	carcucB0069
Carg08230	CsaV3_2G030230	Cucumber (Chinese Long) v3	carcucB0065
Carg08230	Cla97C01G017690	Watermelon (97103) v2	carwmbB0056
Carg08230	Cla97C08G154680	Watermelon (97103) v2	carwmbB0061
Carg08230	Bhi04G001106	Wax gourd	carwgoB0070

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08230	Carg22510	Silver-seed gourd	carcarB069

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08230	Watermelon (97103) v2	carwmbB0057
Carg08230	Watermelon (97103) v2	carwmbB0059
Carg08230	Wax gourd	carwgoB0071
Carg08230	Wax gourd	carwgoB0072
Carg08230	Silver-seed gourd	carcarB064
Carg08230	Silver-seed gourd	carcarB066
Carg08230	Cucumber (Gy14) v2	carcgybB0060
Carg08230	Cucumber (Gy14) v1	carcgyB0067
Carg08230	Cucurbita maxima (Rimu)	carcmaB0071
Carg08230	Cucurbita maxima (Rimu)	carcmaB0082
Carg08230	Cucurbita moschata (Rifu)	carcmoB0075
Carg08230	Cucurbita moschata (Rifu)	carcmoB0082
Carg08230	Cucurbita moschata (Rifu)	carcmoB0086
Carg08230	Cucurbita pepo (Zucchini)	carcpeB0078
Carg08230	Cucurbita pepo (Zucchini)	carcpeB0081
Carg08230	Cucurbita pepo (Zucchini)	carcpeB0085
Carg08230	Wild cucumber (PI 183967)	carcpiB0065
Carg08230	Cucumber (Chinese Long) v2	carcuB0061
Carg08230	Cucumber (Chinese Long) v3	carcucB0067
Carg08230	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08230	Melon (DHL92) v3.5.1	carmeB0060
Carg08230	Melon (DHL92) v3.5.1	carmeB0061
Carg08230	Melon (DHL92) v3.6.1	carmedB0061
Carg08230	Watermelon (Charleston Gray)	carwcgB0059
Carg08230	Watermelon (97103) v1	carwmB0059
Carg08230	Watermelon (97103) v1	carwmB0060