Carg08224 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08224
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cox19-like CHCH family protein
Location	Cucurbita_argyrosperma_scaffold_015 : 213078 .. 216693 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAAGTAGGTTCGTATATAATGAGGCAAGCTTGATAAATCCGGTACAAACCCTAAAGAGGGCAGCCAACGCCATTTCGCTTACTTTTTCTCCTTAGCAGTCGTCGCTTCTCATCGTCAGCAATCATGCCTCGTCGGAGCTCTGGAGGTGAGGGTTTCGTCCATTTTTCCTCTGTATCTCCTTATGACGCTCGTTATTTCTATGTCCGTATGAAGTTTATCCAGCCAGATTTTGTTTTCGGTGCTTTTTTTTTTTTTTTTTCCTTGTTTCTTTACCTCATTTTATGTCTGGTGGTGGCTCTTGTATGAACTGTTGGATTGGACTTTTGGCTTTGGGAAACTTTCGTTTTTATTGATTTATTTTGACGACAAGACTTTCAACCATTTTTATTTTGGGGGCAAAACTAGGGTTTGAAGCTTTTGAAACTCGTGTTAGCTGTGAATATTTGAGCTTTGTTATTTATTAAATATATCTGATGCCTGTGGCAAGTGATTTATCTTTAATCTTTGTTGCAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACCTCGCAATACTCCGGCGCCAGGTAAAGTATCATGATATTTCTTTGGTTTAGTTTAATCATCTGTGTTTCAATATCTCTTTTGGGGTAGAAATGTTGAATTCCACTGTGAGGGCTTGTGTTTTATTAGTTGTCTATTTATCCTTCTCATGCCCGTGGTAGATTGGACTTATAGCCCGGTCTCCTTGGAGACTTGCCTATACCCAAGACATGTTTTTGTGGTTAACAATATATAGAAATACCTTCACGTTTTAGATCATAGTCTTGGTTTGAAAAGTTAGATGCTTCTCAAAAATTTGAAAACAAGGGTTCAATGATAAAAAGTTTAACTGAATTTTTTTTTAAACTTTTTTTTTTGATAAGAAACAATATGGTTGATGTTTGAAATCTACAAAGGGAATGCATTATTCATGATGCTTGCATAAGATCTTTCCAATTTACAATGAGGGAGGTGTACTATAGGTAACAGAAGTATTATAGTCAATTTACACCAAGTAATAGTGTGGTAAATAACATTTTTGTTGAATTATGTAAAAGTCTGTCGTCTCCGTGAATACTCTTGATTTCTTTATTTTCATAGGTTCCAAAAGTTGAATTGAATTCCAATTTAAAATATTGTTCAAAATATGTTAATAATATATTTACAAACGATGAGAACAGTTCTAGTTACTATCTATATTAAGTTCAATCTCAACTATTTATGAACATGTTTTATGTTTTAAATTTTGTAAATAAAAAATTATTGTTTAATGACATTACATACTTTATTATTTTAAAGCCAAGACATCCTCTATTGTAGGAAGTACAAGAGACATTTCCTAAGAATTATGAGATTAGATCAGTTGTAATGACAGAAAGAGTCGTTTCAACTTTCTCTATGATAGAGCTAAGAAAGTCATCATTTCGATATGATATTTTAATTTAACATAACTGAAATATGTTTGTAGATGAAGTTGTTTCAATTTAACATGAGTGAAATATATGTTTATAATCTAAAATACTTTATCAAAGTTTTAACCTTTCGAATTCCTAATTTGGATTTATAAAAGCTAATGACTGTTATAGAAATCAAATCTGCCAATGAGTCCATTTGGTTTAGTGAAATTTAAAACATTCAATGCAAATCTGCCAATATCAGTGAACCTAAGAACATAGTCTAAATTGCATGCTAAACAAGCCTTTAATAACCTAAAACTACAATAGTGAAACTTAAGAGATTGAAAACTATGGAGTAGTGGGGTCGGTAATCCAAGGAGATGAACCTTCTATACTTTTGGTCCATCCCCACGCTAATTATAATTCATAGGTGCCCTTTTTTGTGACGTTTATGTATATGAACTATTCTACCACAGTTATTCATGTGTAAATTGCTTATAATTGACGATATAAATTTGTGGTTAATGGCTTTTTTTATAGCTGGAATCTTGTGAATGTATCATTCTCAACTGGTGTTTGAATGAATGTTGTGTTCTTTTCCATATTCAACTGAGTGTTTCCCTATGTTTTTGACAATTTATTCCTAACAATATTGTTTTTGTCGCTAAATATTACTCGACTTCTGCAGCTCATTCTGCTCCTCCACCTGCACCTGTTCAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACTATTGCTCAAGGTGAGTTTAGAAGCTCTTGCACTTTCTTTTAGGGCATGTATCTGAGTGTTCTTTGAAATGACAAAGTCACTCTAAAACATGTTTTTAATGATTCAACAGAAATTTTGACTTCTGAAAAGTAGAGAATCAAACATTGAATTAACTTGATTGATTAAGAACTTGTCTAGGAGTGATTTTGAATGTAGCAAATAGTGTTTTCAACCATTTTAGAATCATTCCTAAACATGTCCTTCCCACGATAAATTATCTTAACTCTCGTCTTAACTTCCTTTTTGTACTGATGTGCAGGTATGGCCTTCGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCCGTTATGGGTCCTCGTGTCATCCAGCACGAGACTGTTGATTCATCAACTCCTTCGTCAGCACCTTCAGTAGCGAGCAATCCTGGAGGTTCTGATGCTTGTAATGTTCAGTCAAAGTCCTTTCAAGATGTAGGTTCCTTGTTCATCTCCATTGTTATTTACAACATTTTCCTTTTCCTTTTCTAGACGCTTAGATGCGTAAGCCATATTCTCATATTATCTTCAGACCCGATCAACTTATACTCTTTTACGTTTTCTTCCTTGGCAGTGCCTGAACCACTATGGAAGTGACATTAGCAAGTGCCAATTCTACTTAGATATGTTGCAGGAATGCCGCAAGAGCTCAGGTTCTGTTTTGGGTGCTTAAACAATTGATTCTTAGAACAGTTATCATGTATTCTCACTCGGATTGACCGCAGTGAGCGGTGTCAAGATTATCGTGCGTTTTGACTGTGTTTTCATTTTTACAAGTACTGCTTTAACTGTAATAAAGGGTGGCAATGATTTAAAAAACACTTCATCGTTTGGACCTTATTGTTTGGCTTTGAGCTTTGGGTATTTTCTTGTGAAATTAAAACTGCTGTTTTGGATTTATAATATCTACGTGACGAATATTGCAGATTACTCGGTTAAAACAACTATAATCGAGATTTGTAAATTAATTCGAGTTTGTATTAGCCAAATGACTTTTTTTTGTTCTTTTTGTGAAGTTTATGACTTTGATTTGTTGATGTTCTAAACTATATTGACTTAGCCATTTCTTGAAGATCGATCGGTTGATTATTAGCTAGCTCGAGTGGCCCTAGCCATTTCTTTCTGTTAATATGAATCGATATGCTACCATCGATTTTTTATAATGAAATTACGAGATCGAAGTTTGATTTTGCAGTTAGTGTCGGAGTCCTCTCCTTTTTGTTGGGACTTAATTTTTTTAATATGCCCAACGAAAACGTGGTTTTAGTAAAGAAAAGATCAATGCCAACCCAGAATTAGTGGGCATGTGATGTGTTGCATGCAAGTTGTGAGAAGGGGCTTCTCATTGACTTTGCTCAGCTTAGAGAACAAATCTTCCCCACCCATTGCT

mRNA sequence

AATTAAGTAGGTTCGTATATAATGAGGCAAGCTTGATAAATCCGGTACAAACCCTAAAGAGGGCAGCCAACGCCATTTCGCTTACTTTTTCTCCTTAGCAGTCGTCGCTTCTCATCGTCAGCAATCATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACCTCGCAATACTCCGGCGCCAGCTCATTCTGCTCCTCCACCTGCACCTGTTCAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACTATTGCTCAAGGTATGGCCTTCGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCCGTTATGGGTCCTCGTGTCATCCAGCACGAGACTGTTGATTCATCAACTCCTTCGTCAGCACCTTCAGTAGCGAGCAATCCTGGAGGTTCTGATGCTTGTAATGTTCAGTCAAAGTCCTTTCAAGATTGCCTGAACCACTATGGAAGTGACATTAGCAAGTGCCAATTCTACTTAGATATGTTGCAGGAATGCCGCAAGAGCTCAGGTTCTGTTTTGGGTGCTTAAACAATTGATTCTTAGAACAGTTATCATGTATTCTCACTCGGATTGACCGCAGTGAGCGGTGTCAAGATTATCGTGCGTTTTGACTGTGTTTTCATTTTTACAAGTACTGCTTTAACTGTAATAAAGGGTGGCAATGATTTAAAAAACACTTCATCGTTTGGACCTTATTGTTTGGCTTTGAGCTTTGGGTATTTTCTTGTGAAATTAAAACTGCTGTTTTGGATTTATAATATCTACGTGACGAATATTGCAGATTACTCGGTTAAAACAACTATAATCGAGATTTGTAAATTAATTCGAGTTTGTATTAGCCAAATGACTTTTTTTTGTTCTTTTTGTGAAGTTTATGACTTTGATTTGTTGATGTTCTAAACTATATTGACTTAGCCATTTCTTGAAGATCGATCGGTTGATTATTAGCTAGCTCGAGTGGCCCTAGCCATTTCTTTCTGTTAATATGAATCGATATGCTACCATCGATTTTTTATAATGAAATTACGAGATCGAAGTTTGATTTTGCAGTTAGTGTCGGAGTCCTCTCCTTTTTGTTGGGACTTAATTTTTTTAATATGCCCAACGAAAACGTGGTTTTAGTAAAGAAAAGATCAATGCCAACCCAGAATTAGTGGGCATGTGATGTGTTGCATGCAAGTTGTGAGAAGGGGCTTCTCATTGACTTTGCTCAGCTTAGAGAACAAATCTTCCCCACCCATTGCT

Coding sequence (CDS)

ATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACCTCGCAATACTCCGGCGCCAGCTCATTCTGCTCCTCCACCTGCACCTGTTCAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACTATTGCTCAAGGTATGGCCTTCGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCCGTTATGGGTCCTCGTGTCATCCAGCACGAGACTGTTGATTCATCAACTCCTTCGTCAGCACCTTCAGTAGCGAGCAATCCTGGAGGTTCTGATGCTTGTAATGTTCAGTCAAAGTCCTTTCAAGATTGCCTGAACCACTATGGAAGTGACATTAGCAAGTGCCAATTCTACTTAGATATGTTGCAGGAATGCCGCAAGAGCTCAGGTTCTGTTTTGGGTGCTTAA

Protein sequence

MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

Homology

[Close]

BLAST of Carg08224 vs. NCBI nr
Match: XP_022962551.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita moschata] >XP_023545354.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFYLDMLQECRKSSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Carg08224 vs. NCBI nr
Match: XP_022997290.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 232.6 bits (592), Expect = 8.2e-58
Identity = 139/145 (95.86%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAPPRNT     XXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTXXXXXXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVA NPGGSDACNVQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVAINPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFYLDMLQECRKSSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Carg08224 vs. NCBI nr
Match: XP_011649682.1 (PREDICTED: hemiasterlin resistant protein 1-like [Cucumis sativus] >KGN62739.1 hypothetical protein Csa_2G370390 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 134/145 (92.41%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAP RN P    XXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPXXXXXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHETVDSS  SSAPSVASN GGSDACNVQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETVDSSA-SSAPSVASNSGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Carg08224 vs. NCBI nr
Match: XP_008444901.1 (PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 7.0e-49
Identity = 127/145 (87.59%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPA RAP         XXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSAPRPAARAPXXXXXXXXXXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVA+N GGSDACNVQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSA-SSAPSVANNSGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Carg08224 vs. NCBI nr
Match: XP_022132139.1 (uncharacterized protein C6C3.02c-like [Momordica charantia])

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 122/146 (83.56%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAP RN P P  XXXXXXXXXXXXXXX  GGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPQPXXXXXXXXXXXXXXXXXXXGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSS-TPSSAPSVASNPGGSDACNVQSKSFQDCLNHYG 120
           GSAVAHRAVDAVMGPRVIQHE+VDSS  PSS P+ ASN GGS+ CN QSK+ QDCLNHYG
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYG 120

Query: 121 SDISKCQFYLDMLQECRKSSGSVLGA 146
           SDI KCQFY+DMLQECR+SSG  LGA
Sbjct: 121 SDIGKCQFYMDMLQECRRSSGPGLGA 146

[Close]

BLAST of Carg08224 vs. TAIR10
Match: AT5G09570.1 (Cox19-like CHCH family protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-30
Identity = 79/146 (54.11%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPA-PRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFG 60
           MPR SSGGRS+ RP+ P A          XXXXXXX         LG +GA+I +G+A+G
Sbjct: 1   MPRGSSGGRSSYRPSRPAAARSXXXXXXXXXXXXXXAQPSSGGSFLGNIGASITEGLAWG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYG 120
           TG+A  HR VD+VMGPR  +HETV S  PS+A ++        AC++ SK+FQDC+NH+G
Sbjct: 61  TGTAFGHRVVDSVMGPRTFKHETVVSQVPSAANTMT-------ACDIHSKAFQDCVNHFG 120

Query: 121 SDISKCQFYLDMLQECRKSSGSVLGA 146
           SDISKCQFY+DML EC+K+SGSV+ A
Sbjct: 121 SDISKCQFYMDMLSECKKNSGSVVAA 139

[Close]

BLAST of Carg08224 vs. TAIR10
Match: AT5G64400.2 (BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1))

HSP 1 Score: 74.7 bits (182), Expect = 5.2e-14
Identity = 67/114 (58.77%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MPRRSSGGRSA-SRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFG 60
           M RRSSGGRSA                  XXXXXXXXXXXXXXX   G+G+TIAQGMAFG
Sbjct: 1   MGRRSSGGRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSGIGSTIAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQD 114
           TGSAVAHRAVD+VMGPR IQHE V++++ S+AP  A +   S  C++ +K+FQD
Sbjct: 61  TGSAVAHRAVDSVMGPRTIQHEAVEAASASAAP--AGSAMLSSTCDIHAKAFQD 112

[Close]

BLAST of Carg08224 vs. TrEMBL
Match: tr|A0A0A0LNY2|A0A0A0LNY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.1e-53
Identity = 134/145 (92.41%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAP RN P    XXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPXXXXXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHETVDSS  SSAPSVASN GGSDACNVQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETVDSSA-SSAPSVASNSGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Carg08224 vs. TrEMBL
Match: tr|A0A1S3BAZ1|A0A1S3BAZ1_CUCME (uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-49
Identity = 127/145 (87.59%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPA RAP         XXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSAPRPAARAPXXXXXXXXXXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVA+N GGSDACNVQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSA-SSAPSVANNSGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Carg08224 vs. TrEMBL
Match: tr|A0A1U8QAZ0|A0A1U8QAZ0_NELNU (hemiasterlin resistant protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104611952 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 98/146 (67.12%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPR-APPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFG 60
           MPRRSSGGRSA R A R AP RN P PA                +LG LGAT+AQGMAFG
Sbjct: 1   MPRRSSGGRSAPRAARRPAPVRNPPQPASHAPPPAPVQGSSGGSILGNLGATVAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYG 120
           TGSAVAHRAVDAV+GPR IQHETV S   ++AP+   N  GSDACN+ SK+FQDCLN+YG
Sbjct: 61  TGSAVAHRAVDAVLGPRTIQHETVVSEAAAAAPAPTMNNVGSDACNIHSKAFQDCLNNYG 120

Query: 121 SDISKCQFYLDMLQECRKSSGSVLGA 146
           SDISKCQFYLDML ECR++SGSVL A
Sbjct: 121 SDISKCQFYLDMLNECRRNSGSVLSA 146

[Close]

BLAST of Carg08224 vs. TrEMBL
Match: tr|A0A0L9T900|A0A0L9T900_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan393s002900 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.9e-40
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPAPRA P  +P P H   XXXXXX      ML G+G+TIAQGMAFGT
Sbjct: 1   MPRRSSGGRSA-RPAPRAAPARSPQPVH--NXXXXXXAQSGGGMLSGIGSTIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHETV S   ++AP+  +N  GSD+CNV +K+FQDCLN YG+
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETVVSEAAAAAPAPTANTFGSDSCNVHTKAFQDCLNSYGN 120

Query: 121 DISKCQFYLDMLQECRKSSGSVLGA 146
           DISKCQFY+DML ECR++SG+ L A
Sbjct: 121 DISKCQFYMDMLAECRRNSGASLSA 142

[Close]

BLAST of Carg08224 vs. TrEMBL
Match: tr|A0A2I4F5K6|A0A2I4F5K6_9ROSI (uncharacterized protein C6C3.02c-like OS=Juglans regia OX=51240 GN=LOC108995753 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.7e-40
Identity = 94/147 (63.95%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MPRRSSGGRSASR-PAPRAPPRNTPAPAHXXXXXXXXXXXXXXXMLGGLGATIAQGMAFG 60
           MPRRSSGGR ASR P   AP RN P P +               +LGG+G+TIAQGMAFG
Sbjct: 1   MPRRSSGGRPASRAPLRPAPVRNPPQPVNHAPPPAPAQAVSGGSILGGIGSTIAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNP-GGSDACNVQSKSFQDCLNHY 120
           TGSAVAHRAVDAVMGPR IQHETV S   ++AP+  +N   GSDACN+ SK+FQDCLN+Y
Sbjct: 61  TGSAVAHRAVDAVMGPRTIQHETVVSEAAAAAPASTTNSLSGSDACNIHSKAFQDCLNNY 120

Query: 121 GSDISKCQFYLDMLQECRKSSGSVLGA 146
           G+DISKCQFY+DML ECR++SGS+L A
Sbjct: 121 GNDISKCQFYMDMLAECRRNSGSMLNA 147

The following BLAST results are available for this feature:

BLAST of Carg08224 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962551.1	1.4e-62	100.00	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ...	[more]
XP_022997290.1	8.2e-58	95.86	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]
XP_011649682.1	4.7e-53	92.41	PREDICTED: hemiasterlin resistant protein 1-like [Cucumis sativus] >KGN62739.1 h...	[more]
XP_008444901.1	7.0e-49	87.59	PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo]	[more]
XP_022132139.1	2.9e-47	83.56	uncharacterized protein C6C3.02c-like [Momordica charantia]	[more]

BLAST of Carg08224 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09570.1	1.0e-30	54.11	Cox19-like CHCH family protein	[more]
AT5G64400.2	5.2e-14	58.77	BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR...	[more]

BLAST of Carg08224 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08224 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNY2\|A0A0A0LNY2_CUCSA	3.1e-53	92.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 SV=1	[more]
tr\|A0A1S3BAZ1\|A0A1S3BAZ1_CUCME	4.6e-49	87.59	uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE...	[more]
tr\|A0A1U8QAZ0\|A0A1U8QAZ0_NELNU	1.2e-41	67.12	hemiasterlin resistant protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC10461195...	[more]
tr\|A0A0L9T900\|A0A0L9T900_PHAAN	3.9e-40	68.97	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan393s002900 P...	[more]
tr\|A0A2I4F5K6\|A0A2I4F5K6_9ROSI	8.7e-40	63.95	uncharacterized protein C6C3.02c-like OS=Juglans regia OX=51240 GN=LOC108995753 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR010625	CHCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08224-RA	Carg08224-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 104..137 e-value: 4.5E-7 score: 29.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..102
None	No IPR available	PANTHER	PTHR13523:SF9	SUBFAMILY NOT NAMED	coord: 1..142
None	No IPR available	PANTHER	PTHR13523	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77	coord: 1..142
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	SSF47072	Cysteine alpha-hairpin motif	coord: 101..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08224	Cla022140	Watermelon (97103) v1	carwmB0058
Carg08224	Csa2G370390	Cucumber (Chinese Long) v2	carcuB0059
Carg08224	MELO3C011073	Melon (DHL92) v3.5.1	carmeB0058
Carg08224	ClCG08G011560	Watermelon (Charleston Gray)	carwcgB0063
Carg08224	CSPI02G21500	Wild cucumber (PI 183967)	carcpiB0063
Carg08224	Cucsa.160490	Cucumber (Gy14) v1	carcgyB0066
Carg08224	CmaCh05G005340	Cucurbita maxima (Rimu)	carcmaB0083
Carg08224	CmoCh12G001640	Cucurbita moschata (Rifu)	carcmoB0082
Carg08224	Cp4.1LG11g04760	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08224	Cp4.1LG07g01790	Cucurbita pepo (Zucchini)	carcpeB0091
Carg08224	CsGy2G021230	Cucumber (Gy14) v2	carcgybB0060
Carg08224	MELO3C011073.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08224	CsaV3_2G030140	Cucumber (Chinese Long) v3	carcucB0065
Carg08224	Cla97C08G154580	Watermelon (97103) v2	carwmbB0061
Carg08224	Bhi04G001118	Wax gourd	carwgoB0070

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08224	Carg22503	Silver-seed gourd	carcarB069

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08224	Silver-seed gourd	carcarB064
Carg08224	Silver-seed gourd	carcarB066
Carg08224	Cucumber (Gy14) v2	carcgybB0062
Carg08224	Cucumber (Gy14) v2	carcgybB0063
Carg08224	Cucumber (Gy14) v1	carcgyB0065
Carg08224	Cucumber (Gy14) v1	carcgyB0067
Carg08224	Cucurbita maxima (Rimu)	carcmaB0071
Carg08224	Cucurbita maxima (Rimu)	carcmaB0078
Carg08224	Cucurbita maxima (Rimu)	carcmaB0082
Carg08224	Cucurbita maxima (Rimu)	carcmaB0084
Carg08224	Cucurbita moschata (Rifu)	carcmoB0075
Carg08224	Cucurbita moschata (Rifu)	carcmoB0086
Carg08224	Cucurbita moschata (Rifu)	carcmoB0087
Carg08224	Cucurbita moschata (Rifu)	carcmoB0088
Carg08224	Cucurbita pepo (Zucchini)	carcpeB0078
Carg08224	Cucurbita pepo (Zucchini)	carcpeB0081
Carg08224	Cucurbita pepo (Zucchini)	carcpeB0085
Carg08224	Wild cucumber (PI 183967)	carcpiB0065
Carg08224	Wild cucumber (PI 183967)	carcpiB0067
Carg08224	Cucumber (Chinese Long) v2	carcuB0061
Carg08224	Cucumber (Chinese Long) v2	carcuB0063
Carg08224	Cucumber (Chinese Long) v3	carcucB0067
Carg08224	Cucumber (Chinese Long) v3	carcucB0069
Carg08224	Bottle gourd (USVL1VR-Ls)	carlsiB053
Carg08224	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08224	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08224	Melon (DHL92) v3.5.1	carmeB0061
Carg08224	Melon (DHL92) v3.5.1	carmeB0063
Carg08224	Melon (DHL92) v3.6.1	carmedB0061
Carg08224	Melon (DHL92) v3.6.1	carmedB0063
Carg08224	Watermelon (Charleston Gray)	carwcgB0059
Carg08224	Watermelon (Charleston Gray)	carwcgB0061
Carg08224	Watermelon (97103) v1	carwmB0059
Carg08224	Watermelon (97103) v1	carwmB0060
Carg08224	Watermelon (97103) v2	carwmbB0056
Carg08224	Watermelon (97103) v2	carwmbB0057
Carg08224	Wax gourd	carwgoB0071
Carg08224	Wax gourd	carwgoB0072