Carg07905 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07905
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	alpha/beta-Hydrolases superfamily protein
Location	Cucurbita_argyrosperma_scaffold_066 : 669454 .. 670495 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATACATTTAGAAATTAAATTGTTAGTTGCATCTAGAAGAATATACACTTTGTTAAAGCGAACTGCTGAAGGAAAATCCCATGGCGGCATAGGAACAGCACATCAATGCACCAGAAAGATTCTGGATAATTGTCTCGACGTAACTTCCATTAATTTTTCTATTTCCCTCTTCTGTAGACCATACGATTCTCGAGAAGACGGGCAAGTTTCGATATCGGGAAGTACTTCGTAGGGACTTTTCAATGATCGTGAAACTCTGGACGAGAAACAGCTGCGTCAAAGGAATTATCACTTCGAGGGGCCACCAGCTGGGTTGCCTTTGTTTGCTGCTGTTTTTGTAGCCGTATCTTTTGGTCTCCTCCTTGACTTATGCGGATGATTCTGGATCTGGATATGCTTACTACCGAGTAATGTGTTTATGATTTGTTCATTCGTTGAGGGTTTCGTCGTTGGTTGATTTTGCTGTGGTGGGTTGTTTATGGTGTTTCTTTTTTGGTTTTGCAGATCGAGAAGTGGTTTTGGTGTTTGAGATGCTTGTGGAGCTTCTTTTTGAAGAATGGTGAACTGAATTTTTGACTTGGGATTTCCATTTCTATGAGGTGGAGTGGCTGTCGGGGACTCTTGGAATCGATATGATGGATCAGTTCATCAATTTTGTTATTCGGCCTCCTAGGTACTTTTTTTTTTCTGGTATGCCTTGTTGCTTTGCCGAGTTTTCGCTCTTTTTTTTCACTTCTTGCCAATTTCTTGAGCAATTTATCGAGCTGCTACTCAACTACGTGGCTTTAGTGTAGCCTCTAGTGAGCACAATTCTTCCGTTGAGATCTTTGTTTGTTTCTGAGGTTTGTGAGCAGCGGAATTACTCCGATTAGTCCACTTTTGTCTTCATTTTTTCTTGATGGAGCATCATATTTTTGCTGTACAGGGCGGATTATAACCCTGATCAATATTTATGGGAGAAAAATTTCACTCTCGCGGGTAGAGCATACCAACGACAGGATTTGGAGGCAAGTATGGATGGAAAAATTCTTCCGTAA

mRNA sequence

ATGGTTATACATTTAGAAATTAAATTGTTAGTTGCATCTAGAAGAATATACACTTTGTTAAAGCGAACTGCTGAAGGAAAATCCCATGGCGGCATAGGAACAGCACATCAATGCACCAGAAAGATTCTGGATAATTGTCTCGACGGACTTTTCAATGATCGTGAAACTCTGGACGAGAAACAGCTGCGTCAAAGGAATTATCACTTCGAGGGGCCACCAGCTGGGTTGCCTTTGTTTGCTGCTCCGTATCTTTTGGTCTCCTCCTTGACTTATGCGGATGATTCTGGATCTGGATATGCTTACTACCGAGTGGAGTGGCTGTCGGGGACTCTTGGAATCGATATGATGGATCAGTTCATCAATTTTGTTATTCGGCCTCCTAGGGCGGATTATAACCCTGATCAATATTTATGGGAGAAAAATTTCACTCTCGCGGGTAGAGCATACCAACGACAGGATTTGGAGGCAAGTATGGATGGAAAAATTCTTCCGTAA

Coding sequence (CDS)

ATGGTTATACATTTAGAAATTAAATTGTTAGTTGCATCTAGAAGAATATACACTTTGTTAAAGCGAACTGCTGAAGGAAAATCCCATGGCGGCATAGGAACAGCACATCAATGCACCAGAAAGATTCTGGATAATTGTCTCGACGGACTTTTCAATGATCGTGAAACTCTGGACGAGAAACAGCTGCGTCAAAGGAATTATCACTTCGAGGGGCCACCAGCTGGGTTGCCTTTGTTTGCTGCTCCGTATCTTTTGGTCTCCTCCTTGACTTATGCGGATGATTCTGGATCTGGATATGCTTACTACCGAGTGGAGTGGCTGTCGGGGACTCTTGGAATCGATATGATGGATCAGTTCATCAATTTTGTTATTCGGCCTCCTAGGGCGGATTATAACCCTGATCAATATTTATGGGAGAAAAATTTCACTCTCGCGGGTAGAGCATACCAACGACAGGATTTGGAGGCAAGTATGGATGGAAAAATTCTTCCGTAA

Protein sequence

MVIHLEIKLLVASRRIYTLLKRTAEGKSHGGIGTAHQCTRKILDNCLDGLFNDRETLDEKQLRQRNYHFEGPPAGLPLFAAPYLLVSSLTYADDSGSGYAYYRVEWLSGTLGIDMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMDGKILP

Homology

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: PON57688.1 (Alpha/beta hydrolase fold [Parasponia andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 6.7e-16
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGRAY+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRAYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: XP_022926851.1 (uncharacterized protein LOC111433838 isoform X2 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: XP_022926850.1 (uncharacterized protein LOC111433838 isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: XP_023517840.1 (uncharacterized protein LOC111781469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: PON78243.1 (Alpha/beta hydrolase fold [Trema orientalis])

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGR Y+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRTYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. TAIR10
Match: AT4G17150.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 111 LGIDMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           LGI M+DQFINFVIRPPRA+Y+PDQYLWEK F+L G   +RQDLE
Sbjct: 6   LGIKMIDQFINFVIRPPRAEYDPDQYLWEKEFSLGGTKCKRQDLE 50

[Close]

BLAST of Carg07905 vs. TAIR10
Match: AT4G14290.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-10
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 116 MDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEA-SMDGKIL 164
           M+Q +NFVIRPPRA+YNP+  L E+ F L GR YQR+DLE  ++ G IL
Sbjct: 1   MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDIL 49

[Close]

BLAST of Carg07905 vs. TAIR10
Match: AT3G23540.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 116 MDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MDQ +NF+IRPPRA+Y+P+  L EK F + GR YQR+DLE
Sbjct: 1   MDQLVNFIIRPPRAEYDPEHDLLEKKFMMKGRWYQRKDLE 40

[Close]

BLAST of Carg07905 vs. TrEMBL
Match: tr|A0A2P5C9G6|A0A2P5C9G6_PARAD (Alpha/beta hydrolase fold OS=Parasponia andersonii OX=3476 GN=PanWU01x14_172360 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGRAY+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRAYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. TrEMBL
Match: tr|A0A2P5DY95|A0A2P5DY95_9ROSA (Alpha/beta hydrolase fold OS=Trema orientalis OX=63057 GN=TorRG33x02_238370 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGR Y+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRTYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. TrEMBL
Match: tr|A0A1S3B1U1|A0A1S3B1U1_CUCME (uncharacterized protein LOC103485206 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485206 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           M+DQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MIDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. TrEMBL
Match: tr|A0A1S3B316|A0A1S3B316_CUCME (uncharacterized protein LOC103485206 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485206 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           M+DQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MIDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. TrEMBL
Match: tr|A0A0A0KJQ5|A0A0A0KJQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510270 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           M+DQFINFVIRPPRADYNPDQYLWEK+FTLAGRAYQRQDLE
Sbjct: 1   MIDQFINFVIRPPRADYNPDQYLWEKSFTLAGRAYQRQDLE 41

The following BLAST results are available for this feature:

BLAST of Carg07905 vs. NCBI nr


Match Name	E-value	Identity	Description
PON57688.1	6.7e-16	91.11	Alpha/beta hydrolase fold [Parasponia andersonii]	[more]
XP_022926851.1	1.5e-15	100.00	uncharacterized protein LOC111433838 isoform X2 [Cucurbita moschata]	[more]
XP_022926850.1	1.5e-15	100.00	uncharacterized protein LOC111433838 isoform X1 [Cucurbita moschata]	[more]
XP_023517840.1	1.5e-15	100.00	uncharacterized protein LOC111781469 [Cucurbita pepo subsp. pepo]	[more]
PON78243.1	2.0e-15	88.89	Alpha/beta hydrolase fold [Trema orientalis]	[more]

BLAST of Carg07905 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17150.1	5.3e-15	75.56	alpha/beta-Hydrolases superfamily protein	[more]
AT4G14290.1	6.7e-10	59.18	alpha/beta-Hydrolases superfamily protein	[more]
AT3G23540.1	1.5e-09	62.50	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of Carg07905 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07905 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5C9G6\|A0A2P5C9G6_PARAD	4.5e-16	91.11	Alpha/beta hydrolase fold OS=Parasponia andersonii OX=3476 GN=PanWU01x14_172360 ...	[more]
tr\|A0A2P5DY95\|A0A2P5DY95_9ROSA	1.3e-15	88.89	Alpha/beta hydrolase fold OS=Trema orientalis OX=63057 GN=TorRG33x02_238370 PE=4...	[more]
tr\|A0A1S3B1U1\|A0A1S3B1U1_CUCME	2.9e-15	97.56	uncharacterized protein LOC103485206 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B316\|A0A1S3B316_CUCME	2.9e-15	97.56	uncharacterized protein LOC103485206 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KJQ5\|A0A0A0KJQ5_CUCSA	1.1e-14	95.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510270 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07905-RA	Carg07905-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43358	FAMILY NOT NAMED	coord: 115..156
None	No IPR available	PANTHER	PTHR43358:SF1	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 115..156

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07905	Silver-seed gourd	carcarB425
Carg07905	Cucumber (Gy14) v2	carcgybB0640
Carg07905	Cucumber (Gy14) v1	carcgyB0714
Carg07905	Cucurbita maxima (Rimu)	carcmaB0912
Carg07905	Cucurbita maxima (Rimu)	carcmaB0914
Carg07905	Cucurbita moschata (Rifu)	carcmoB0886
Carg07905	Cucurbita moschata (Rifu)	carcmoB0888
Carg07905	Cucurbita pepo (Zucchini)	carcpeB0913
Carg07905	Cucurbita pepo (Zucchini)	carcpeB0915
Carg07905	Wild cucumber (PI 183967)	carcpiB0672
Carg07905	Cucumber (Chinese Long) v2	carcuB0663
Carg07905	Cucumber (Chinese Long) v3	carcucB0674
Carg07905	Bottle gourd (USVL1VR-Ls)	carlsiB585
Carg07905	Melon (DHL92) v3.5.1	carmeB0643
Carg07905	Melon (DHL92) v3.6.1	carmedB0653
Carg07905	Watermelon (Charleston Gray)	carwcgB0623
Carg07905	Watermelon (97103) v1	carwmB0642
Carg07905	Watermelon (97103) v2	carwmbB0669
Carg07905	Wax gourd	carwgoB0759