Carg07855 (gene) Silver-seed gourd

Overview
NameCarg07855
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_066 : 492689 .. 494000 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGTAAAAGAAAGAGCTTCCTCTGCTCATGGTGTGTGCCTGCATTGTCAGCCAATTTAGAAGAGGCTTCCAAAGACTTGCCGGTACGTGTGAAAAGATGGTTACCATACTGATACTTGTGAATTTAACACTGATGTAATATAGTGACTTTGTTGAGAATATTATTTGGATATCTTTTAAATTGATATGATATGATAGCAATGGTTTGAGGAATAAAAACTCTTCAATAACTTTTTCTTGTTTTGAAACAATGTCAAAGTTAAGAGTTTGAATTAATTTTTATAAAGCATTTGTATAATTCTATGCGTCTTTTTTCAACTATGATGGTTTGAATTTGTTGGATTCCTGCTACAACATGATAGGGATGGTTTTATTTTTATTATTATTTTCAGTAAAACAGATAGGTTAGGATGAGCTCACTTTGGTCCATCAATTATTTTATTAAAAACGTATTTAAAAAAGATATCCTCTTTATAAAACATTTATAATTAAATACATGGTCAAATACAAAATATTATAACATTTATGAAGCTTATCTTAATTTAAATCATTAAACAAAACATTGTTAGGTATGGTTTGAGAAATGGTGGAAATGTCAGTAGGAAGCTTAAAATTAGCAGCAAAAATTAGCAGAAAAAGAAGAACACATTGAATAGGAGAGGAAGAGGAAGAAAAGGCAAAGACAAAAGAGAAAGTGAAAGGGAATATATGGGTGTGTTTTCTGTCATCAAAAAAGCCTATTCTCATTGGTTTGAACACCGCAGGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCTGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGCCCCTGCAATCACCCGGTGCCTATGGCTACCACTTGCCATGCTTGGATCTGCACACACAATCCAATATTTTTCACTAGATCTTTAAGAATAGAAGAAATCAATCATTAAATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATACACACTCGTGTAGCTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCCGTTGCACACTGTGGCACGTGCGTGCATAA

mRNA sequence

ATGGATCGTAAAAGAAAGAGCTTCCTCTGCTCATGGTGTGTGCCTGCATTGTCAGCCAATTTAGAAGAGGCTTCCAAAGACTTGCCGGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCTGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGCCCCTGCAATCACCCGAAGAAATCAATCATTAAATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATACACACTCGTGTAGCTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCCGTTGCACACTGTGGCACGTGCGTGCATAA

Coding sequence (CDS)

ATGGATCGTAAAAGAAAGAGCTTCCTCTGCTCATGGTGTGTGCCTGCATTGTCAGCCAATTTAGAAGAGGCTTCCAAAGACTTGCCGGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCTGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGCCCCTGCAATCACCCGAAGAAATCAATCATTAAATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATACACACTCGTGTAGCTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCCGTTGCACACTGTGGCACGTGCGTGCATAA

Protein sequence

MDRKRKSFLCSWCVPALSANLEEASKDLPVTGALAFSFFNNKIAAATPSAPAADTALTAPAITRRNQSLNDMIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTSFQRRCTLWHVRA
Homology
[Close]
BLAST of Carg07855 vs. NCBI nr
Match: PON91268.1 (hypothetical protein TorRG33x02_128310, partial [Trema orientalis])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 0 

Query: 79  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHS 138
           +S  +   T AQE  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   
Sbjct: 53  ISCHVCFPTKAQEILRMNIKPTSPASLTHILAPKTTRSHRNLKVNSDPIFRDLIIRL-SC 112

Query: 139 SNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTS------FQRRCTLWHVRA 185
           ++ PPIH  V   +L+HQ QR+    +IR A +S       +RR TL  V A
Sbjct: 113 ASVPPIHAGVTRTILQHQPQRLGRFRVIRTARSSTTAHSAIRRRATLGQVAA 163

[Close]
BLAST of Carg07855 vs. NCBI nr
Match: PON52123.1 (hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii])

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 0 

Query: 65  RNQSLNDMIWDT--FTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKI 124
           RN S + M+ +     +S  I   T A E  R+N+K T PA+L +ILA +T  S  N+K+
Sbjct: 37  RNNSNSPMLINAVIVAISCHIFFPTKAHEILRMNIKPTSPASLIHILALKTTRSHWNLKV 96

Query: 125 NSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAA------GTSFQRR 184
           NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A       ++ +RR
Sbjct: 97  NSDPIFRDLIIRL-SCTSVPPIHAGVTRTILQHQPQRLGRFRVIRTARSNTITHSTIRRR 156

[Close]
BLAST of Carg07855 vs. NCBI nr
Match: RDX70635.1 (hypothetical protein CR513_50104, partial [Mucuna pruriens])

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-09
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 97  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQ 156
           +KST   + Q ILA +    D NIKINS+PIF  LII    S+N  PI+  + S +LEHQ
Sbjct: 10  IKSTSSTSFQGILALKAAGGDRNIKINSDPIFRDLIIR-HRSANVLPINASITSTILEHQ 69

Query: 157 LQRIHGLGMIRAAGTSFQRR 177
            QR+ G G++RAA T+ +R+
Sbjct: 70  PQRLSGFGIVRAASTARERK 88

[Close]
BLAST of Carg07855 vs. TrEMBL
Match: tr|A0A2P5F0F7|A0A2P5F0F7_9ROSA (Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_128310 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 0 

Query: 79  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHS 138
           +S  +   T AQE  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   
Sbjct: 53  ISCHVCFPTKAQEILRMNIKPTSPASLTHILAPKTTRSHRNLKVNSDPIFRDLIIRL-SC 112

Query: 139 SNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTS------FQRRCTLWHVRA 185
           ++ PPIH  V   +L+HQ QR+    +IR A +S       +RR TL  V A
Sbjct: 113 ASVPPIHAGVTRTILQHQPQRLGRFRVIRTARSSTTAHSAIRRRATLGQVAA 163

[Close]
BLAST of Carg07855 vs. TrEMBL
Match: tr|A0A2P5BTK1|A0A2P5BTK1_PARAD (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_211130 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 0 

Query: 65  RNQSLNDMIWDT--FTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKI 124
           RN S + M+ +     +S  I   T A E  R+N+K T PA+L +ILA +T  S  N+K+
Sbjct: 37  RNNSNSPMLINAVIVAISCHIFFPTKAHEILRMNIKPTSPASLIHILALKTTRSHWNLKV 96

Query: 125 NSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAA------GTSFQRR 184
           NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A       ++ +RR
Sbjct: 97  NSDPIFRDLIIRL-SCTSVPPIHAGVTRTILQHQPQRLGRFRVIRTARSNTITHSTIRRR 156

The following BLAST results are available for this feature:
BLAST of Carg07855 vs. NCBI nr
Match NameE-valueIdentityDescription
PON91268.11.9e-1142.86hypothetical protein TorRG33x02_128310, partial [Trema orientalis][more]
PON52123.11.6e-1039.84hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii][more]
RDX70635.14.0e-0947.50hypothetical protein CR513_50104, partial [Mucuna pruriens][more]
BLAST of Carg07855 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg07855 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07855 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5F0F7|A0A2P5F0F7_9ROSA1.3e-1142.86Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_12... [more]
tr|A0A2P5BTK1|A0A2P5BTK1_PARAD1.1e-1039.84Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07855-RACarg07855-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07855CmaCh07G003260Cucurbita maxima (Rimu)carcmaB0914
Carg07855CmoCh07G003140Cucurbita moschata (Rifu)carcmoB0888
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg07855Silver-seed gourdcarcarB359
Carg07855Silver-seed gourdcarcarB563
Carg07855Silver-seed gourdcarcarB565
Carg07855Cucumber (Gy14) v2carcgybB0637
Carg07855Cucumber (Gy14) v2carcgybB0640
Carg07855Cucumber (Gy14) v2carcgybB0641
Carg07855Cucumber (Gy14) v1carcgyB0714
Carg07855Cucumber (Gy14) v1carcgyB0715
Carg07855Cucumber (Gy14) v1carcgyB0717
Carg07855Cucurbita maxima (Rimu)carcmaB0906
Carg07855Cucurbita maxima (Rimu)carcmaB0912
Carg07855Cucurbita moschata (Rifu)carcmoB0882
Carg07855Cucurbita moschata (Rifu)carcmoB0886
Carg07855Cucurbita pepo (Zucchini)carcpeB0913
Carg07855Cucurbita pepo (Zucchini)carcpeB0915
Carg07855Cucurbita pepo (Zucchini)carcpeB0916
Carg07855Wild cucumber (PI 183967)carcpiB0673
Carg07855Wild cucumber (PI 183967)carcpiB0670
Carg07855Wild cucumber (PI 183967)carcpiB0672
Carg07855Cucumber (Chinese Long) v2carcuB0661
Carg07855Cucumber (Chinese Long) v2carcuB0663
Carg07855Cucumber (Chinese Long) v2carcuB0664
Carg07855Cucumber (Chinese Long) v3carcucB0672
Carg07855Cucumber (Chinese Long) v3carcucB0674
Carg07855Cucumber (Chinese Long) v3carcucB0675
Carg07855Bottle gourd (USVL1VR-Ls)carlsiB585
Carg07855Bottle gourd (USVL1VR-Ls)carlsiB584
Carg07855Bottle gourd (USVL1VR-Ls)carlsiB587
Carg07855Melon (DHL92) v3.5.1carmeB0639
Carg07855Melon (DHL92) v3.5.1carmeB0640
Carg07855Melon (DHL92) v3.5.1carmeB0642
Carg07855Melon (DHL92) v3.6.1carmedB0649
Carg07855Melon (DHL92) v3.6.1carmedB0650
Carg07855Melon (DHL92) v3.6.1carmedB0652
Carg07855Watermelon (Charleston Gray)carwcgB0623
Carg07855Watermelon (Charleston Gray)carwcgB0624
Carg07855Watermelon (Charleston Gray)carwcgB0626
Carg07855Watermelon (97103) v1carwmB0641
Carg07855Watermelon (97103) v1carwmB0642
Carg07855Watermelon (97103) v2carwmbB0669
Carg07855Watermelon (97103) v2carwmbB0672
Carg07855Wax gourdcarwgoB0758
Carg07855Wax gourdcarwgoB0759
Carg07855Wax gourdcarwgoB0760