Carg07700 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07700
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	Cucurbita_argyrosperma_scaffold_024 : 976506 .. 977502 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTTCCACCGTTAATCGATGGCTGAGACCTGAGGTATCACTCAGATCTGCCATCTGGTTATTCTCCGATCCTGTTTTGTTATTGATTGATGTTCGTTTCCTTGTCGTCTAATCATCTGAATTCCTTTTTAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGGTTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGGTCTCTCCGCGTTTTCCCTATTTTTAACTCTCCAATTGTTTTTTGTGGTTTAATCTGCATATTCTCACGGTATATGACGATACTGGATTCGAGGATGAATAATAAGAAGTTTTAAAAATAAACCTACCTTTGCTTCTTTTCTATTCCTGCGATTAGTTTGAATAGGAGGAATTTGTCAGATTATGATGCATGTATAAAAATGTATGAAGTAGTACTGAAATGGATTTAACCGGATGAAAGAGGATTTTTTTTTTTTTTTTCCCTTTGTGATTCCTGCGGCATAAATCTAAAGAACGTTAGGTTTTTCTTTTAGCATTTTTCTGCAACTTAGACAGTAGGCATGACCAAGAAGATATGTCAAGGTGTAAATTGTTATGAAATTAGATTCAATTCCCTAACGAGGAAAACTGAAACTGACGAGATCTGCAAATTGAATTCAACAATTCATTCCCCCTATACTTATTTGTTTCTATCTTTCATGGATTGTCTGTGTGCCCTAGTGAAAAAGGAAGTAATTGGCTTTCAATGAAATGGGATATAAACAGACCATATTTTTGTTCTTAATCAAGAGTTTTATAACCTGATTAGTAAGTCGTTTGTGATCCAATGAAAATCAGAGTGACCAAGGAGAATAGAGCCGCCGGAGTCCTGGATAACTTTGCTGAGGGAGAGAAGTATACCGAGCATTTCCTGAGGAAATTCGTGCGCAACAAGTCACCAGAAATTATGCCGTCAATCAACAACTTCTTCACAGACCCAAGTCGAAACTAA

mRNA sequence

ATGGCTCCTTCCACCGTTAATCGATGGCTGAGACCTGAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGGTTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGACCAAGGAGAATAGAGCCGCCGGAGTCCTGGATAACTTTGCTGAGGGAGAGAAGTATACCGAGCATTTCCTGAGGAAATTCGTGCGCAACAAGTCACCAGAAATTATGCCGTCAATCAACAACTTCTTCACAGACCCAAGTCGAAACTAA

Coding sequence (CDS)

ATGGCTCCTTCCACCGTTAATCGATGGCTGAGACCTGAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGGTTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGACCAAGGAGAATAGAGCCGCCGGAGTCCTGGATAACTTTGCTGAGGGAGAGAAGTATACCGAGCATTTCCTGAGGAAATTCGTGCGCAACAAGTCACCAGAAATTATGCCGTCAATCAACAACTTCTTCACAGACCCAAGTCGAAACTAA

Protein sequence

MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEGEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN

Homology

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BLAST of Carg07700 vs. NCBI nr
Match: XP_022924187.1 (uncharacterized protein LOC111431708 [Cucurbita moschata] >XP_023519445.1 uncharacterized protein LOC111782858 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 9.3e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60
          MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

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BLAST of Carg07700 vs. NCBI nr
Match: XP_023000853.1 (uncharacterized protein LOC111495175 [Cucurbita maxima])

HSP 1 Score: 193.0 bits (489), Expect = 4.6e-46
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60
          MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNF EG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFDEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

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BLAST of Carg07700 vs. NCBI nr
Match: XP_022137737.1 (uncharacterized protein LOC111009092 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 8.7e-45
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60
          MAPSTV+RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENR+AGVLDNFAEG
Sbjct: 1  MAPSTVSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Carg07700 vs. NCBI nr
Match: XP_008437938.1 (PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAP-STVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAE 60
          MAP ST++RWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Carg07700 vs. NCBI nr
Match: KGN64280.1 (hypothetical protein Csa_1G045780 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 4.8e-43
Identity = 87/94 (92.55%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPST-VNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAE 60
          MAPS+ ++RWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVTKENRAAGVLDNFAE
Sbjct: 1  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 61 GEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

[Close]

BLAST of Carg07700 vs. TAIR10
Match: AT3G48140.1 (B12D protein)

HSP 1 Score: 147.9 bits (372), Expect = 3.1e-36
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 7  NRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEGEKYTEH 66
          +RWLRPEVYPLFAA GVAVGIC F L+RNI  NPEVR TKENRAAG+LDN AEGEKY E+
Sbjct: 3  SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query: 67 FLRKFVRNKSPEIMPSINNFFTDPS 92
          FLRKFVRNK PEIMP +N FFTDP+
Sbjct: 63 FLRKFVRNKKPEIMPGLNKFFTDPT 87

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BLAST of Carg07700 vs. TAIR10
Match: AT3G29970.1 (B12D protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-22
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 6  VNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEGEKYTE 65
          + RW+RPEVYPL  A+G    +  FQL RN  +NP+ R+ KE+R  G+L+N  EGEKY +
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 66 HFLRKFVRNKSPEIMPSINNFFT 89
          H  RK++R + P++MPS+N FF+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFS 83

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BLAST of Carg07700 vs. TrEMBL
Match: tr|A0A1S3AVT0|A0A1S3AVT0_CUCME (uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAP-STVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAE 60
          MAP ST++RWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Carg07700 vs. TrEMBL
Match: tr|A0A0A0LQT3|A0A0A0LQT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045780 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-43
Identity = 87/94 (92.55%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPST-VNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAE 60
          MAPS+ ++RWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVTKENRAAGVLDNFAE
Sbjct: 1  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 61 GEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

[Close]

BLAST of Carg07700 vs. TrEMBL
Match: tr|A0A2N9H0H4|A0A2N9H0H4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35888 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-41
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60
          MA S  +RWLRPEVYPLFAAVGVAVGICGF L+RNICINPEVRV+KE RAAGVLDNFAEG
Sbjct: 1  MASSNASRWLRPEVYPLFAAVGVAVGICGFSLIRNICINPEVRVSKETRAAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKYTEHFLRKFVRNKSPEIMPSIN+FFTDPSR+
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINSFFTDPSRS 93

[Close]

BLAST of Carg07700 vs. TrEMBL
Match: tr|A0A2I4FIS1|A0A2I4FIS1_9ROSI (uncharacterized protein LOC108999191 OS=Juglans regia OX=51240 GN=LOC108999191 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.9e-41
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60
          MAP   NRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV KENR AGVLDNFAEG
Sbjct: 1  MAP---NRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRTAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY+EHFLRKFVRNK+PEIMPS+N+FFTDPSRN
Sbjct: 61 EKYSEHFLRKFVRNKTPEIMPSLNSFFTDPSRN 90

[Close]

BLAST of Carg07700 vs. TrEMBL
Match: tr|A0A2I0K633|A0A2I0K633_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_016341 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.6e-41
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60
          MA S++NRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVL+NF EG
Sbjct: 1  MASSSMNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLENFTEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY+EH LRKFVRNKSPEIMP+INNFFT P R+
Sbjct: 61 EKYSEHALRKFVRNKSPEIMPAINNFFTSPDRS 93

The following BLAST results are available for this feature:

BLAST of Carg07700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924187.1	9.3e-47	100.00	uncharacterized protein LOC111431708 [Cucurbita moschata] >XP_023519445.1 unchar...	[more]
XP_023000853.1	4.6e-46	98.92	uncharacterized protein LOC111495175 [Cucurbita maxima]	[more]
XP_022137737.1	8.7e-45	95.70	uncharacterized protein LOC111009092 [Momordica charantia]	[more]
XP_008437938.1	2.1e-43	93.62	PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo]	[more]
KGN64280.1	4.8e-43	92.55	hypothetical protein Csa_1G045780 [Cucumis sativus]	[more]

BLAST of Carg07700 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48140.1	3.1e-36	80.00	B12D protein	[more]
AT3G29970.1	4.3e-22	49.40	B12D protein	[more]

BLAST of Carg07700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVT0\|A0A1S3AVT0_CUCME	1.4e-43	93.62	uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=...	[more]
tr\|A0A0A0LQT3\|A0A0A0LQT3_CUCSA	3.2e-43	92.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045780 PE=4 SV=1	[more]
tr\|A0A2N9H0H4\|A0A2N9H0H4_FAGSY	2.3e-41	89.25	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35888 PE=4 SV=1	[more]
tr\|A0A2I4FIS1\|A0A2I4FIS1_9ROSI	3.9e-41	90.32	uncharacterized protein LOC108999191 OS=Juglans regia OX=51240 GN=LOC108999191 P...	[more]
tr\|A0A2I0K633\|A0A2I0K633_PUNGR	8.6e-41	88.17	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_016341 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010530	B12D

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07700-RA	Carg07700-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 11..78 e-value: 6.9E-25 score: 86.5
None	No IPR available	PANTHER	PTHR33417:SF7	SUBFAMILY NOT NAMED	coord: 2..92
None	No IPR available	PANTHER	PTHR33417	FAMILY NOT NAMED	coord: 2..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07700	Cla008315	Watermelon (97103) v1	carwmB1006
Carg07700	Csa1G045780	Cucumber (Chinese Long) v2	carcuB1019
Carg07700	MELO3C002233	Melon (DHL92) v3.5.1	carmeB0976
Carg07700	ClCG01G014150	Watermelon (Charleston Gray)	carwcgB0977
Carg07700	CSPI01G08190	Wild cucumber (PI 183967)	carcpiB1043
Carg07700	CmaCh13G009100	Cucurbita maxima (Rimu)	carcmaB1393
Carg07700	CmoCh13G009380	Cucurbita moschata (Rifu)	carcmoB1349
Carg07700	Lsi02G003440	Bottle gourd (USVL1VR-Ls)	carlsiB919
Carg07700	Cp4.1LG20g02100	Cucurbita pepo (Zucchini)	carcpeB1401
Carg07700	CsGy1G008100	Cucumber (Gy14) v2	carcgybB0991
Carg07700	MELO3C002233.2	Melon (DHL92) v3.6.1	carmedB0986
Carg07700	CsaV3_1G008160	Cucumber (Chinese Long) v3	carcucB1048
Carg07700	Cla97C01G013150	Watermelon (97103) v2	carwmbB1057
Carg07700	Bhi08G001196	Wax gourd	carwgoB1181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07700	Silver-seed gourd	carcarB312
Carg07700	Silver-seed gourd	carcarB394
Carg07700	Silver-seed gourd	carcarB482
Carg07700	Silver-seed gourd	carcarB546
Carg07700	Cucumber (Gy14) v2	carcgybB0990
Carg07700	Cucumber (Gy14) v1	carcgyB1120
Carg07700	Cucumber (Gy14) v1	carcgyB1123
Carg07700	Cucurbita maxima (Rimu)	carcmaB1390
Carg07700	Cucurbita maxima (Rimu)	carcmaB1396
Carg07700	Cucurbita moschata (Rifu)	carcmoB1345
Carg07700	Cucurbita moschata (Rifu)	carcmoB1347
Carg07700	Cucurbita moschata (Rifu)	carcmoB1351
Carg07700	Cucurbita moschata (Rifu)	carcmoB1354
Carg07700	Cucurbita pepo (Zucchini)	carcpeB1394
Carg07700	Cucurbita pepo (Zucchini)	carcpeB1399
Carg07700	Cucurbita pepo (Zucchini)	carcpeB1403
Carg07700	Wild cucumber (PI 183967)	carcpiB1042
Carg07700	Cucumber (Chinese Long) v2	carcuB1018
Carg07700	Cucumber (Chinese Long) v3	carcucB1047
Carg07700	Bottle gourd (USVL1VR-Ls)	carlsiB921
Carg07700	Melon (DHL92) v3.5.1	carmeB0979
Carg07700	Melon (DHL92) v3.6.1	carmedB0989
Carg07700	Watermelon (Charleston Gray)	carwcgB0982
Carg07700	Watermelon (97103) v1	carwmB1002
Carg07700	Watermelon (97103) v1	carwmB1008
Carg07700	Watermelon (97103) v2	carwmbB1062
Carg07700	Watermelon (97103) v2	carwmbB1064
Carg07700	Watermelon (97103) v2	carwmbB1065
Carg07700	Wax gourd	carwgoB1174
Carg07700	Wax gourd	carwgoB1184