Carg07691 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07691
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Myc-type, basic helix-loop-helix (BHLH) domain containing protein
Location	Cucurbita_argyrosperma_scaffold_024 : 925795 .. 926852 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGTTCGGAGATACAAAGCTTCGGTATGACGACGACCTTTCGGGTAACTTGGTCTGACATTATTCTTATTGTCTTATTATCTTCTTCATGTTGAGGCATATGATAAAGTCATTTGTACTCAAACATTAGATACAGATAAGGGAGAGACAAGGTTGAAGATAGAGAGGTGGATGTATTACTTCCTTTCTTCCCATTCTCTTCGATTCCACATGGGGTTTTATTTGGCAGCGTTGAAGTTTCTTGTCCATTCCAAGACTTAATACTTTATTTTGAGGTTTTAAGGGAATGTCTCATTATGAGGTAGGTCCCTGCCAGTCCATTGAGCTGTTTCTCCCATTGCTTTCAGCATTCAATGAAATTTGTCTCTCTATCAGTCCATTGCTATCTGCAGATGTATTTGCACAGATGAAATGATCCATTGTTGAATTAGAAACACTTTTACTGACACAGCAATCATATAACTCTGCTGGACTGATTATATCTCTGTTCTTGTTTAGAATCTGAAAGTTTGAATGAATCTGCTCTGCTGTGTGCTTTGAACTGGATTGATTCATTCCTGAGTGACCCAAATGGTTATACAGATCAGAATTCCACTTCCCTTCTCTTCAAGGAACTGGATAAGCCACAGCATGTGGGTGATGACCAAGTAACCAGCTCGTGAGCTGAAGGACAGATGTTGGAACGCTGGCAAACAAACAAGTGGACATGATTTTGCATTCAGAATCTGCCTGACACGTGTACAGAGCCCACACCCAGCTGAGCCTCTGTTCTGAGTTCTTATATAAACAAACCTCCAAACCATTCCCAAACTCATCTCTTTTAGTATTGAATCTATGGGTTCCTCTTGCCATCTGAATGTGCCTGCTTTGAAGAGGAAGAGGAGAGAAGCGCGCCAGGTTCGCCGGAAAGTGCAGAAGCTCCGGTGGGTTGTGCCCGGTGGGAGAGGGTTGCAACAGGAACATCTCTTCGCCAAAACGGCTCATTATATACTGCATTTGAGATTGAAAGTCTGTGCTCTTCAAACCATTCTCAAATTGCAGGATGAGGCTTGA

mRNA sequence

ATGAATTTGTTCGGAGATACAAAGCTTCGGTATGACGACGACCTTTCGGAATCTGAAAGTTTGAATGAATCTGCTCTGCTGTGTGCTTTGAACTGGATTGATTCATTCCTGAGTGACCCAAATGGTTATACAGATCAGAATTCCACTTCCCTTCTCTTCAAGGAACTGGATAAGCCACAGCATGTGGGTGATGACCAAGTAACCAGCTCTATTGAATCTATGGGTTCCTCTTGCCATCTGAATGTGCCTGCTTTGAAGAGGAAGAGGAGAGAAGCGCGCCAGGTTCGCCGGAAAGTGCAGAAGCTCCGGTGGGTTGTGCCCGGTGGGAGAGGGTTGCAACAGGAACATCTCTTCGCCAAAACGGCTCATTATATACTGCATTTGAGATTGAAAGTCTGTGCTCTTCAAACCATTCTCAAATTGCAGGATGAGGCTTGA

Coding sequence (CDS)

ATGAATTTGTTCGGAGATACAAAGCTTCGGTATGACGACGACCTTTCGGAATCTGAAAGTTTGAATGAATCTGCTCTGCTGTGTGCTTTGAACTGGATTGATTCATTCCTGAGTGACCCAAATGGTTATACAGATCAGAATTCCACTTCCCTTCTCTTCAAGGAACTGGATAAGCCACAGCATGTGGGTGATGACCAAGTAACCAGCTCTATTGAATCTATGGGTTCCTCTTGCCATCTGAATGTGCCTGCTTTGAAGAGGAAGAGGAGAGAAGCGCGCCAGGTTCGCCGGAAAGTGCAGAAGCTCCGGTGGGTTGTGCCCGGTGGGAGAGGGTTGCAACAGGAACATCTCTTCGCCAAAACGGCTCATTATATACTGCATTTGAGATTGAAAGTCTGTGCTCTTCAAACCATTCTCAAATTGCAGGATGAGGCTTGA

Protein sequence

MNLFGDTKLRYDDDLSESESLNESALLCALNWIDSFLSDPNGYTDQNSTSLLFKELDKPQHVGDDQVTSSIESMGSSCHLNVPALKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILKLQDEA

Homology

[Close]

BLAST of Carg07691 vs. NCBI nr
Match: XP_010653274.1 (PREDICTED: transcription factor PAR1 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-07
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 86  KRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILKL 142
           K +RR  R VRRKV+KL+ ++PGGRGLQ + LF +TA YILHLR +V  LQ + K+
Sbjct: 13  KLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRFQVNVLQALSKI 68

[Close]

BLAST of Carg07691 vs. NCBI nr
Match: PIA62137.1 (hypothetical protein AQUCO_00200262v1 [Aquilegia coerulea])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 72  ESMGSSCHLNVPALKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLK 131
           + M SS   N  +LKR+R   R V+ KV++L+ +VPGG+GL+ + LF +TA+YILHLRL+
Sbjct: 10  KQMSSSSSRN--SLKRRRVVRRSVKTKVKRLQKIVPGGQGLEPDRLFLQTANYILHLRLQ 69

Query: 132 VCALQTILKL 142
           V  LQ + KL
Sbjct: 70  VDVLQALSKL 77

[Close]

BLAST of Carg07691 vs. NCBI nr
Match: CAN78770.1 (hypothetical protein VITISV_024249 [Vitis vinifera])

HSP 1 Score: 59.7 bits (143), Expect = 9.5e-06
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 86  KRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKV 133
           K +RR  R VRRKV+KL+ ++PGGRGLQ + LF +TA YILHLRL++
Sbjct: 13  KLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQM 59

[Close]

BLAST of Carg07691 vs. NCBI nr
Match: OMO78413.1 (hypothetical protein COLO4_24771 [Corchorus olitorius])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 85  LKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILK 141
           L +++R  R V+ K QKL+ VVPG  GL  +HL   TAHYILHLRL++C L+ ++K
Sbjct: 17  LGKRQRRQRSVQMKAQKLQRVVPGTHGLLLDHLLLHTAHYILHLRLQLCLLEALVK 72

[Close]

BLAST of Carg07691 vs. NCBI nr
Match: XP_010254299.1 (PREDICTED: transcription factor PAR1-like [Nelumbo nucifera])

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 87  RKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILKL 142
           R+  + R VR KV+KL+ +VPGGRGLQ + LF +TA YILHLRL++  LQ + KL
Sbjct: 15  RRVSDRRSVRMKVRKLQRLVPGGRGLQPDRLFLQTADYILHLRLQLKVLQALSKL 69

[Close]

BLAST of Carg07691 vs. TrEMBL
Match: tr|A0A2G5F2J9|A0A2G5F2J9_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00200262v1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 72  ESMGSSCHLNVPALKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLK 131
           + M SS   N  +LKR+R   R V+ KV++L+ +VPGG+GL+ + LF +TA+YILHLRL+
Sbjct: 10  KQMSSSSSRN--SLKRRRVVRRSVKTKVKRLQKIVPGGQGLEPDRLFLQTANYILHLRLQ 69

Query: 132 VCALQTILKL 142
           V  LQ + KL
Sbjct: 70  VDVLQALSKL 77

[Close]

BLAST of Carg07691 vs. TrEMBL
Match: tr|A5B8W0|A5B8W0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_024249 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-06
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 86  KRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKV 133
           K +RR  R VRRKV+KL+ ++PGGRGLQ + LF +TA YILHLRL++
Sbjct: 13  KLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQM 59

[Close]

BLAST of Carg07691 vs. TrEMBL
Match: tr|A0A1R3I760|A0A1R3I760_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24771 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.2e-06
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 85  LKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILK 141
           L +++R  R V+ K QKL+ VVPG  GL  +HL   TAHYILHLRL++C L+ ++K
Sbjct: 17  LGKRQRRQRSVQMKAQKLQRVVPGTHGLLLDHLLLHTAHYILHLRLQLCLLEALVK 72

[Close]

BLAST of Carg07691 vs. TrEMBL
Match: tr|A0A1U7ZQT4|A0A1U7ZQT4_NELNU (transcription factor PAR1-like OS=Nelumbo nucifera OX=4432 GN=LOC104595309 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 87  RKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILKL 142
           R+  + R VR KV+KL+ +VPGGRGLQ + LF +TA YILHLRL++  LQ + KL
Sbjct: 15  RRVSDRRSVRMKVRKLQRLVPGGRGLQPDRLFLQTADYILHLRLQLKVLQALSKL 69

[Close]

BLAST of Carg07691 vs. TrEMBL
Match: tr|A0A2C9WMT3|A0A2C9WMT3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G198300 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-05
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 86  KRKRREAR-QVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVCALQTILKL 142
           +R+RR  R  VR KV+KL+ ++PGG+GLQ + LF  TA YILHLRL+V  LQ + K+
Sbjct: 16  RRQRRAVRGSVRMKVKKLQKLIPGGQGLQPDRLFLMTADYILHLRLQVNVLQALSKI 72

The following BLAST results are available for this feature:

BLAST of Carg07691 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010653274.1	6.6e-07	57.14	PREDICTED: transcription factor PAR1 [Vitis vinifera]	[more]
PIA62137.1	1.9e-06	50.00	hypothetical protein AQUCO_00200262v1 [Aquilegia coerulea]	[more]
CAN78770.1	9.5e-06	61.70	hypothetical protein VITISV_024249 [Vitis vinifera]	[more]
OMO78413.1	1.2e-05	51.79	hypothetical protein COLO4_24771 [Corchorus olitorius]	[more]
XP_010254299.1	2.1e-05	56.36	PREDICTED: transcription factor PAR1-like [Nelumbo nucifera]	[more]

BLAST of Carg07691 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07691 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07691 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G5F2J9\|A0A2G5F2J9_AQUCA	1.3e-06	50.00	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00200262v1 PE=4...	[more]
tr\|A5B8W0\|A5B8W0_VITVI	6.3e-06	61.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_024249 PE=4 SV=1	[more]
tr\|A0A1R3I760\|A0A1R3I760_9ROSI	8.2e-06	51.79	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24771 PE=4 SV=1	[more]
tr\|A0A1U7ZQT4\|A0A1U7ZQT4_NELNU	1.4e-05	56.36	transcription factor PAR1-like OS=Nelumbo nucifera OX=4432 GN=LOC104595309 PE=4 ...	[more]
tr\|A0A2C9WMT3\|A0A2C9WMT3_MANES	5.3e-05	54.39	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G198300 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07691-RA	Carg07691-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 84..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07691	MELO3C002247	Melon (DHL92) v3.5.1	carmeB0976
Carg07691	CSPI01G08320	Wild cucumber (PI 183967)	carcpiB1043
Carg07691	CmaCh13G009010	Cucurbita maxima (Rimu)	carcmaB1393
Carg07691	Lsi02G003550	Bottle gourd (USVL1VR-Ls)	carlsiB919
Carg07691	Cp4.1LG09g10440	Cucurbita pepo (Zucchini)	carcpeB1394
Carg07691	MELO3C002247.2	Melon (DHL92) v3.6.1	carmedB0986
Carg07691	Cla97C01G013010	Watermelon (97103) v2	carwmbB1057
Carg07691	Bhi08G001292	Wax gourd	carwgoB1180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07691	Watermelon (97103) v2	carwmbB1062
Carg07691	Watermelon (97103) v2	carwmbB1064
Carg07691	Watermelon (97103) v2	carwmbB1065
Carg07691	Wax gourd	carwgoB1174
Carg07691	Wax gourd	carwgoB1184
Carg07691	Silver-seed gourd	carcarB312
Carg07691	Silver-seed gourd	carcarB394
Carg07691	Silver-seed gourd	carcarB482
Carg07691	Silver-seed gourd	carcarB546
Carg07691	Cucumber (Gy14) v2	carcgybB0990
Carg07691	Cucumber (Gy14) v2	carcgybB0991
Carg07691	Cucumber (Gy14) v1	carcgyB1120
Carg07691	Cucumber (Gy14) v1	carcgyB1123
Carg07691	Cucurbita maxima (Rimu)	carcmaB1390
Carg07691	Cucurbita maxima (Rimu)	carcmaB1396
Carg07691	Cucurbita moschata (Rifu)	carcmoB1345
Carg07691	Cucurbita moschata (Rifu)	carcmoB1347
Carg07691	Cucurbita moschata (Rifu)	carcmoB1349
Carg07691	Cucurbita moschata (Rifu)	carcmoB1351
Carg07691	Cucurbita moschata (Rifu)	carcmoB1354
Carg07691	Cucurbita pepo (Zucchini)	carcpeB1399
Carg07691	Cucurbita pepo (Zucchini)	carcpeB1401
Carg07691	Cucurbita pepo (Zucchini)	carcpeB1403
Carg07691	Wild cucumber (PI 183967)	carcpiB1042
Carg07691	Cucumber (Chinese Long) v2	carcuB1018
Carg07691	Cucumber (Chinese Long) v2	carcuB1019
Carg07691	Cucumber (Chinese Long) v3	carcucB1047
Carg07691	Cucumber (Chinese Long) v3	carcucB1048
Carg07691	Bottle gourd (USVL1VR-Ls)	carlsiB921
Carg07691	Melon (DHL92) v3.5.1	carmeB0979
Carg07691	Melon (DHL92) v3.6.1	carmedB0989
Carg07691	Watermelon (Charleston Gray)	carwcgB0982
Carg07691	Watermelon (97103) v1	carwmB1002
Carg07691	Watermelon (97103) v1	carwmB1006
Carg07691	Watermelon (97103) v1	carwmB1008