Carg07682 (gene) Silver-seed gourd

Overview
NameCarg07682
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_024 : 894669 .. 897026 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATGGGCCTTGAAATTAATGAGGCTCGGCCCAATATCGTGGTGGTGGGCCCATGAAGATTTGGCGGGGAACACTGGAAGTGATTTAGCGAGGGATTTGCGGTGTTCGAAATTCTCATCTCTCTGTTCATTTGCTTGAATCCTTAATTCCGTCGGTTCTGCCATCTGCGTCTGTGATTATCGGAGGTGGAGCTCTTCCGATGGCGGCCGAGAATGTGCGGAATTCAGGTCGGCAGATCTCTTGCATTTTTATAAGATTGATTTTCTTTTTCTTTCTTGGTGTTGTGATTGTCTATTGAAGCATCTAGTTTCTACTGTTCTTTGTTATTAGTGGAGGAATTTTATGGCAATGGCAGCGACTCTCCTGCCAATCTTAGAAAATCTCTTATTGAGCAAAATGGCCTTACGAAGGAAGAGATAGATTAAGCGATTAGGGTTTATTCTATCATTTCATATATGCTTGATTGTTTCATCCAAATCTTCGTGTGCCATGGATTGCGATTTAAGTAGCTTCAACTCAAACTTTACAGCCTTCAGCTTCTGCACCCACTGCGCCTTAGAACTGCCGTCGATTTCAGGTGCTGGAGTGGCTTTAATAATTAAGGCACCTGTCCAGTATAAATTCCTGTTGAAGTTGGAGATTCTAGGGATTCTCTTTTATTTTCATTGAACTTCATGTCATAGAGCAATATTTATGTGTGCAGTGAAATCCTCTACCGTGCCTCATCCTTCTGCGTTCATAGAGGAGGTAACTGACCTTCCAAAAGAAAATCATATTTCTGTAAGTAGATAACGCCTCTCAACTGTAAGCTGCTTATATTTGTTTGTGTGCTTTCTATGGCAGTGTTTTGATGCTTTTGTGTGTGCCGATCTGAAAACCTTAGATTTCTGAATTTGAGTAAGGGCAGAGGAGAGATACCTTCAAATAGTAGTTCTCATGCAGGATTCATTCCCCAACTCAAATCAGTAGAATATCAAAGGAATCCCTCCACCCCTAGAAGAATACAAGTATGTCCTTTGGCAACTTGCATATCCATCTCCTGAATTGATGGCCTATCCTGGGGTAGCAATATATCAAAATATATAACCAGGCAATTAGGGGCCATGGGTTTCTCCTCGGCTACCACTTCTCTCAGTACCAAAAGCATTTGTTGTGAAAATCTTTCCCCAACCGATGTATTTTAAAACCGTGAGGTTAACAGCGATATGTAAGGAGCTAAAGTAGACAATATCTACTAATGGTGGGCTTGAGTTGTTACAAATAGTATTATAGCCAGATACCAAGCGGCGTGTCGGTGAGGACTCTAGCCCCCAAGGGGGTGAATTGTGAGATCCTACGTTAGTTGGAGAGTAGAACGAAATATTCTTTGAAGGGTGTGGAAATCTCTTCCTAATAGATGCGTTTTAAAACCGTGAGGCTGAGGACGGTACGCAATGAGTCAAAGTAGACAACATCTGCTAATAGTGGCCTCGAGATGTTACAAAAACATTTAATAGTGGCCTCGAGGTGTTACAAAACATTGACCATCAATCAAAGCAAGCCCAAATACTGTAAGTATACTTATACAGCATTGTAAGTATCAGAGTGTCTATTGACAGAACACTCTTTAAGAGCTGCTCATATATTTTAGGTAATGGGTCTGTACGTGAATTGACATGTTTGTTAATATGCATTCCAAACAACGTGGGACAGCTACATTTTTCTCACATGGATACTTGACATCTTAAATATACAGGGGTCGTCTTAGTCTTATTCTAAATAAGCCAAATTATGTGTTTATTTTTTCCCCTTGTTGGCCAGGTGAGGCTGGAGTGGGGAAAGGGCTTGCTTCTGCACATGGGTGGGTTTGGATATTTATTTGAGAAGATCTGGAATACCCAAAGGACAGAATCAGACAGAAAAAACTTTTAACTTTTAGTACAGATATTGGAGCATACACTTGGCTGTTATATTGTGGCGGAAGACGGCGGCGCCCACAACATTGGCTGCCGGCGGCAGCCATTGTTTGATTGGACTCCCTTTTCTGGCTGCTAGCAATTGCAAAGCTCACCGTTCTGTAATTTTCAAGGGAATCCTCTCTTCTTCTTTAACGTCCCATTTTCCAAAGTCGGGATTCGCTTTTGCTGTTGGATTATTGTGTTTGTCTTTATTAATGATTGTGATTACCGCTCCTAATCTTGGCGATAAGAACATAATTGTGATTGCTTTCTTTTTCTTTTTTAATTTTGGCTTAATCGAGACTCTACTTCTTTTTCTGGAGCCTTTAAACAAAGTACACCATTTGTTCGATACTTTAGTCACTTTTGACTACACCTTCCAGACTCACAATTCTTTGTTCGATATTTGAGGATTCTTTTG

mRNA sequence

TAATGGGCCTTGAAATTAATGAGGCTCGGCCCAATATCGTGGTGGTGGGCCCATGAAGATTTGGCGGGGAACACTGGAAGTGATTTAGCGAGGGATTTGCGGTGTTCGAAATTCTCATCTCTCTGTTCATTTGCTTGAATCCTTAATTCCGTCGGTTCTGCCATCTGCGTCTGTGATTATCGGAGGTGGAGCTCTTCCGATGGCGGCCGAGAATGTGCGGAATTCAGTGAAATCCTCTACCGTGCCTCATCCTTCTGCGTTCATAGAGGAGGTAACTGACCTTCCAAAAGAAAATCATATTTCTGTGAGGCTGGAGTGGGGAAAGGGCTTGCTTCTGCACATGGGTGGGTTTGGATATTTATTTGAGAAGATCTGGAATACCCAAAGGACAGAATCAGACAGAAAAAACTTTTAACTTTTAGTACAGATATTGGAGCATACACTTGGCTGTTATATTGTGGCGGAAGACGGCGGCGCCCACAACATTGGCTGCCGGCGGCAGCCATTGTTTGATTGGACTCCCTTTTCTGGCTGCTAGCAATTGCAAAGCTCACCGTTCTGTAATTTTCAAGGGAATCCTCTCTTCTTCTTTAACGTCCCATTTTCCAAAGTCGGGATTCGCTTTTGCTGTTGGATTATTGTGTTTGTCTTTATTAATGATTGTGATTACCGCTCCTAATCTTGGCGATAAGAACATAATTGTGATTGCTTTCTTTTTCTTTTTTAATTTTGGCTTAATCGAGACTCTACTTCTTTTTCTGGAGCCTTTAAACAAAGTACACCATTTGTTCGATACTTTAGTCACTTTTGACTACACCTTCCAGACTCACAATTCTTTGTTCGATATTTGAGGATTCTTTTG

Coding sequence (CDS)

ATGGCGGCCGAGAATGTGCGGAATTCAGTGAAATCCTCTACCGTGCCTCATCCTTCTGCGTTCATAGAGGAGGTAACTGACCTTCCAAAAGAAAATCATATTTCTGTGAGGCTGGAGTGGGGAAAGGGCTTGCTTCTGCACATGGGTGGGTTTGGATATTTATTTGAGAAGATCTGGAATACCCAAAGGACAGAATCAGACAGAAAAAACTTTTAA

Protein sequence

MAAENVRNSVKSSTVPHPSAFIEEVTDLPKENHISVRLEWGKGLLLHMGGFGYLFEKIWNTQRTESDRKNF
Homology
[Close]
BLAST of Carg07682 vs. NCBI nr
Match: XP_022923733.1 (uncharacterized protein LOC111431352 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 9.7e-28
Identity = 67/87 (77.01%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MAAENVRN----------------SVKSSTVPHPSAFIEEVTDLPKENHISVRLEWGKGL 60
          M AENVRN                SVKSS VPHPSAFIEEVTDLPKENHISVRLEWGKGL
Sbjct: 1  MTAENVRNSAFSFCTHCAFELPSISVKSSAVPHPSAFIEEVTDLPKENHISVRLEWGKGL 60

Query: 61 LLHMGGFGYLFEKIWNTQRTESDRKNF 72
          LLHMGGFGYLFEKIWNTQRTESD+K F
Sbjct: 61 LLHMGGFGYLFEKIWNTQRTESDKKLF 87

The following BLAST results are available for this feature:
BLAST of Carg07682 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923733.19.7e-2877.01uncharacterized protein LOC111431352 [Cucurbita moschata][more]
BLAST of Carg07682 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg07682 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07682 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07682-RACarg07682-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg07682Silver-seed gourdcarcarB312
Carg07682Silver-seed gourdcarcarB394
Carg07682Silver-seed gourdcarcarB482
Carg07682Silver-seed gourdcarcarB546
Carg07682Cucumber (Gy14) v2carcgybB0990
Carg07682Cucumber (Gy14) v2carcgybB0991
Carg07682Cucumber (Gy14) v1carcgyB1120
Carg07682Cucumber (Gy14) v1carcgyB1123
Carg07682Cucurbita maxima (Rimu)carcmaB1390
Carg07682Cucurbita maxima (Rimu)carcmaB1393
Carg07682Cucurbita maxima (Rimu)carcmaB1396
Carg07682Cucurbita moschata (Rifu)carcmoB1345
Carg07682Cucurbita moschata (Rifu)carcmoB1347
Carg07682Cucurbita moschata (Rifu)carcmoB1349
Carg07682Cucurbita moschata (Rifu)carcmoB1351
Carg07682Cucurbita moschata (Rifu)carcmoB1354
Carg07682Cucurbita pepo (Zucchini)carcpeB1394
Carg07682Cucurbita pepo (Zucchini)carcpeB1399
Carg07682Cucurbita pepo (Zucchini)carcpeB1401
Carg07682Cucurbita pepo (Zucchini)carcpeB1403
Carg07682Wild cucumber (PI 183967)carcpiB1042
Carg07682Wild cucumber (PI 183967)carcpiB1043
Carg07682Cucumber (Chinese Long) v2carcuB1018
Carg07682Cucumber (Chinese Long) v2carcuB1019
Carg07682Cucumber (Chinese Long) v3carcucB1047
Carg07682Cucumber (Chinese Long) v3carcucB1048
Carg07682Bottle gourd (USVL1VR-Ls)carlsiB919
Carg07682Bottle gourd (USVL1VR-Ls)carlsiB921
Carg07682Melon (DHL92) v3.5.1carmeB0976
Carg07682Melon (DHL92) v3.5.1carmeB0979
Carg07682Melon (DHL92) v3.6.1carmedB0986
Carg07682Melon (DHL92) v3.6.1carmedB0989
Carg07682Watermelon (Charleston Gray)carwcgB0978
Carg07682Watermelon (Charleston Gray)carwcgB0982
Carg07682Watermelon (97103) v1carwmB1002
Carg07682Watermelon (97103) v1carwmB1006
Carg07682Watermelon (97103) v1carwmB1008
Carg07682Watermelon (97103) v2carwmbB1058
Carg07682Watermelon (97103) v2carwmbB1064
Carg07682Watermelon (97103) v2carwmbB1065
Carg07682Wax gourdcarwgoB1174
Carg07682Wax gourdcarwgoB1180