Carg07617 (gene) Silver-seed gourd

Overview
NameCarg07617
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionBidirectional sugar transporter SWEET
LocationCucurbita_argyrosperma_scaffold_024 : 606382 .. 608094 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTATCATTCAATATGCATAACCCTGGAGCCTTTGCATTCGGCCTTCTCGGTACCTATTCTTTCACATCCCCTCTATCCTCAACCACAATTCAGCAACATAAATAACCCAACTCTCTTCTAATTTTGTAGGTAACCTTATCTCCTTCATCGTGTTCTTGGCTCCTCTGTAAGTATCCACTTCACTTCATTTTTTCAGTGTATTTTGAGCTACAAAATTAAAGGGTTTTGGTATGTGGGTGTGGCAGACCAACGTTTATAAGAATTTGTAAGAAGAAATCAACAGAAGGGTTCCAATCAGTTCCATACGTGGTGGCACTTTTTAGCGCCATGCTTTGGTTATACTACGCCTCATTCAAGCCTGATGAAACCCTTCTCATTACAATCAATTCAGTTGGGTGTGTCATTGAGATTGTTTACATAGCCATCTTCGTTGCTTTTGCTCCTAAGCAAATTCGGGTATTGTTCTTGGATTAGTTCTTAAAGGTTTCAACTTTTTTTATGGAATTTAACTTTTTGATCCAAATTTGTGCAGATTTCCACGTTGAGATTTGTTCTTCTGCTGAACTTTGGTGGGTTTTGTATAATTTTACTTGTGACTCACTTCTTAGTGCATGGCTCAAACAGAGTGAAGGTTCTTGGATGGATTTGTGTGGCCTTTTCTATCAGTGTCTTTGCAGCTCCATTAAGCATAATGGTAAGTATCTTCGTTACTATGTTAATTTGTGTTGTGTGGCGTATGCTACCGCCTTCAATGCTCTGATACCACTTGTTGTGTACCGAAATGCTACAACTTCAATGTTTTTTTATACCAATTGTTGTACTTATAGCGGAAGCAATATCGAATTTACTCACACACCCACGAATGAAATTTAAACAAAGAGACAGATTTAAAGAATTTTTCTCTTCGAACTACGTAAATCTTTGTCTCTTTGTTTAGATTTCGTTCATGGGTGTGTGAGTATATTTGATCTTGCTTCCGCTATGTTGAGGATTATTGGGAGTGAGTCCCACGTTGGCTAATTTAGAAATAATCATGGGTTTATAAGTGAAGTACTACATCTCCATTGATACTATGCCTCTTGGGGAAGCCCAAAGTAAAGTCATGAGAGCTTATTCTCAAATTGGACAATATCATACGATCGTAGAGGGTCATGATTCCTAACACGTTATTAGTATCAGAGCATAGAAGGTTGTAGCATTCAACCATTTCTTTGAAGAACGGTATGTTAATTTCTCGATTTTTCTTTACGAAAGAGATTGGTGATTCGCACGAAGAGCGTGGAGTTCATGCCGTTTTCTTTATCGTTCTTCCTCACACTGAGTGCCATTACATGGCTTCTTTATGGCGTATTGCTCAAAGACATCTATATTGCGGTATTTTTACTATTCACCCTATAAATTTTAGACCAATTATTAGTATAATTTGATGATTGAATTTCGTGTTTTGATTATGGTAAGCTTCCAAATGTGCCGGGGTTTATATTCGGGATAGCTCAAATGATTCTTTATATAATCTACAACAAACAAGAAATAGCAGAGGAAATGACTGCCGCCGCCGCCGCCGCCAACGCCGCCGCCACAAACTCTGACAAAGAAAAACAAGATTCTGTTGAAGCGGTTGAGGTAATCATAACCGAAGTCAACAACGAGGACAAAGACAAGAACTTGGAAGTCAACGGCCTTATTAGAAACCCTAATCATGTTTAA

mRNA sequence

ATGGCTTTATCATTCAATATGCATAACCCTGGAGCCTTTGCATTCGGCCTTCTCGTGCATGGCTCAAACAGAGTGAAGCTTCCAAATGTGCCGGGGTTTATATTCGGGATAGCTCAAATGATTCTTTATATAATCTACAACAAACAAGAAATAGCAGAGGAAATGACTGCCGCCGCCGCCGCCGCCAACGCCGCCGCCACAAACTCTGACAAAGAAAAACAAGATTCTGTTGAAGCGGTTGAGGTAATCATAACCGAAGTCAACAACGAGGACAAAGACAAGAACTTGGAAGTCAACGGCCTTATTAGAAACCCTAATCATGTTTAA

Coding sequence (CDS)

ATGGCTTTATCATTCAATATGCATAACCCTGGAGCCTTTGCATTCGGCCTTCTCGTGCATGGCTCAAACAGAGTGAAGCTTCCAAATGTGCCGGGGTTTATATTCGGGATAGCTCAAATGATTCTTTATATAATCTACAACAAACAAGAAATAGCAGAGGAAATGACTGCCGCCGCCGCCGCCGCCAACGCCGCCGCCACAAACTCTGACAAAGAAAAACAAGATTCTGTTGAAGCGGTTGAGGTAATCATAACCGAAGTCAACAACGAGGACAAAGACAAGAACTTGGAAGTCAACGGCCTTATTAGAAACCCTAATCATGTTTAA

Protein sequence

MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVIITEVNNEDKDKNLEVNGLIRNPNHV
Homology
[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_022923939.1 (bidirectional sugar transporter SWEET12-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-23
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII
Sbjct: 193 IALPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 252

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 253 TEVNNEDKDKNLEVNGLIRNPNHV 276

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_022923938.1 (bidirectional sugar transporter SWEET12-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-23
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 277

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_023000940.1 (bidirectional sugar transporter SWEET12-like [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNK EIA EM    XXXXXXXXXXXXXXXXSVEA+EVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKHEIAGEM--TAXXXXXXXXXXXXXXXXSVEAIEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 275

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_023520033.1 (bidirectional sugar transporter SWEET12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-20
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNK EIAEEM  XXXXXXXXXXXXXXXXXX VE +EVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKHEIAEEM--XXXXXXXXXXXXXXXXXXXVETIEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 275

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_023519900.1 (bidirectional sugar transporter SWEET12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-05
Identity = 61/106 (57.55%), Postives = 68/106 (64.15%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEI--AEEM------------XXXXXXXXXXXXXXX 84
           V LPNV GFIFG+AQMILY+IY KQEI  A+EM            XXXXXXXXXXXXXXX
Sbjct: 193 VALPNVLGFIFGVAQMILYLIYKKQEIAMAKEMKLPEHTTEIIXXXXXXXXXXXXXXXXX 252

Query: 85  XXXXXSVEAVEVIIT-----------EVNNEDKDKNLEVNGLIRNP 106
           XX   SV A+EVIIT           ++  +DKDKNLEVN  I  P
Sbjct: 253 XXLPPSVGAIEVIITNGIEHDNKMELDLKVKDKDKNLEVNDQITVP 298

[Close]
BLAST of Carg07617 vs. TAIR10
Match: AT5G50790.1 (Nodulin MtN3 family protein)

HSP 1 Score: 43.5 bits (101), Expect = 9.6e-05
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 13  FAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNK 49
           F +GLL+   N + LPNV GFIFG+ QMIL++IY K
Sbjct: 180 FFYGLLLKDMN-IALPNVLGFIFGVLQMILFLIYKK 214

[Close]
BLAST of Carg07617 vs. TAIR10
Match: AT2G39060.1 (Nodulin MtN3 family protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.7e-04
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 1   MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIY 47
           ++LS  ++    F +GLL+     + +PN+ GF+FG+AQMILY++Y
Sbjct: 168 LSLSLTLNAVMWFFYGLLIK-DKFIAMPNILGFLFGVAQMILYMMY 212

[Close]
BLAST of Carg07617 vs. TrEMBL
Match: tr|A0A0A0LTX7|A0A0A0LTX7_CUCSA (Bidirectional sugar transporter SWEET OS=Cucumis sativus OX=3659 GN=Csa_1G051720 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.8e-04
Identity = 30/60 (50.00%), Postives = 33/60 (55.00%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMXXXXXXXXXXXXXXXXXXXXSVEAVEVII 84
           V LPNV GFIFG+AQMILY+IY K EIA                       SVEA+EVII
Sbjct: 193 VALPNVLGFIFGVAQMILYLIYRKYEIAIAKEMKLPEQTTVDIVMKQKQDSSVEAIEVII 252

The following BLAST results are available for this feature:
BLAST of Carg07617 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923939.13.7e-2397.62bidirectional sugar transporter SWEET12-like isoform X3 [Cucurbita moschata][more]
XP_022923938.13.7e-2397.62bidirectional sugar transporter SWEET12-like isoform X2 [Cucurbita moschata][more]
XP_023000940.12.3e-2089.29bidirectional sugar transporter SWEET12-like [Cucurbita maxima][more]
XP_023520033.13.9e-2090.48bidirectional sugar transporter SWEET12-like [Cucurbita pepo subsp. pepo][more]
XP_023519900.17.9e-0557.55bidirectional sugar transporter SWEET12-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg07617 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50790.19.6e-0558.33Nodulin MtN3 family protein[more]
AT2G39060.14.7e-0441.30Nodulin MtN3 family protein[more]
BLAST of Carg07617 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07617 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTX7|A0A0A0LTX7_CUCSA9.8e-0450.00Bidirectional sugar transporter SWEET OS=Cucumis sativus OX=3659 GN=Csa_1G051720... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07617-RACarg07617-RAmRNA