Carg07578 (gene) Silver-seed gourd

Overview
NameCarg07578
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description26S proteasome non-ATPase regulatory subunit 6 homolog
LocationCucurbita_argyrosperma_scaffold_024 : 411210 .. 412860 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCTTGTTTGAAGAAGGTGGTGATTGGGAAAGAAAGAATCGTCTGAAGGTGTATGAAGGCTTGTACTGCCTGTCCACTCGAAACTTTAAGAAGGCAGCCAACTTGTTTCTGGATTCCATCTCAACTTTCACCACATATGAGCTTTTTCCTTACGACACATTCATATTTTATACTGTTCTCACAAGCATTATTTCATTGGATAGAGTGTCTCTAAAGCAAAAGGTATATCCACGGATTTGCAGTCAGCTTGTTTTTAATTTTTTTTCTTTTTGTAACGTCAATTTTAATTTATTTCCTGTAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCATTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGGTAAGTGGAAATGTAACTCAATGTCTAAAACTATGATTGATGGTCTGCTAGTTTCGTGTCTCATATAGTTCCTTCAACAAATGCAGCTGGTCTGACCGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGTAAGTGGTCATTCATTGTTGTACTTTTTAAAATATTTGTGAATAGAAGAAGCTTTTGTTATCTGCATGATGTATAAAGGACCGTTCTCCCTCTCATAAATTCTCTTTATGGTTTCAGGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAACTAGGCCTTTAGTTGATTTGAAATTTGTTCGAGCCAAAAAGCCTCAATGCACGAATGAAGTTTGAGCATTAGAACTTCGTGAAAATGGCGATGTAATATTGTTTCGAACATATCAACATCTCTGGCTTGCTGTTATCACTGTCGCTTGATTTTGTTTATTAACCAAGAACCTTATTAGAAATTCTATGAATGCTCTAAACCTACCCTTTTCATGCTCTTTTCTTCTTCTAGGTGCTTGCTTGTTCTTTGGCAGTTTATATTGCCTCTTGTGTACTGAGTGGAGTAAACAAATCCACGGTGATTTAACTCTTTGCTTATTTCAAACAAGTGGTAGGAATGCTATTTCTGATCCAGGATTACCTAGCTTCTTGCTTGACGATGATGCTGTAAATGCAATGCCCATACCTTTCAGCTGTAGAATCAATCTCCAAGAGCCAGAAATTGTGGCAAATAGCTTGTAATGGTATGTGTATGTGCTTTGGATATTCATTGAACTTAAAAGTGCTTGCAAATGCAAATGTACTTTGGATATTTATTGAACTCTTAAATGGGGAATTATTTCAACTTTGAATGTACTTACTCTTTATTAGTTTGGGATAAATAACAATTTCTACCTCGCTAGCGAGACATTAGGCGGTGTGCTAACAATGATACTGGACTCCAAAGAAGGTGGATTGTGAGATCCCGC

mRNA sequence

ATGCCAGCTTGTTTGAAGAAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCATTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGCTGGTCTGACCGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAACTAGGCCTTTAGTTGATTTGAAATTTGTTCGAGCCAAAAAGCCTCAATGCACGAATGAAGTTTGAGCATTAGAACTTCGTGAAAATGGCGATGTAATATTGTTTCGAACATATCAACATCTCTGGCTTGCTGTTATCACTGTCGCTTGATTTTGTTTATTAACCAAGAACCTTATTAGAAATTCTATGAATGCTCTAAACCTACCCTTTTCATGCTCTTTTCTTCTTCTAGGTGCTTGCTTGTTCTTTGGCAGTTTATATTGCCTCTTGTGTACTGAGTGGAGTAAACAAATCCACGGTGATTTAACTCTTTGCTTATTTCAAACAAGTGGTAGGAATGCTATTTCTGATCCAGGATTACCTAGCTTCTTGCTTGACGATGATGCTGTAAATGCAATGCCCATACCTTTCAGCTGTAGAATCAATCTCCAAGAGCCAGAAATTGTGGCAAATAGCTTGTAATGGTATGTGTATGTGCTTTGGATATTCATTGAACTTAAAAGTGCTTGCAAATGCAAATGTACTTTGGATATTTATTGAACTCTTAAATGGGGAATTATTTCAACTTTGAATGTACTTACTCTTTATTAGTTTGGGATAAATAACAATTTCTACCTCGCTAGCGAGACATTAGGCGGTGTGCTAACAATGATACTGGACTCCAAAGAAGGTGGATTGTGAGATCCCGC

Coding sequence (CDS)

ATGCCAGCTTGTTTGAAGAAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCATTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGCTGGTCTGACCGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAA

Protein sequence

MPACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Homology
[Close]
BLAST of Carg07578 vs. NCBI nr
Match: XP_022923807.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata] >XP_023000805.1 26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 2.9e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. NCBI nr
Match: XP_023519947.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 2.9e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. NCBI nr
Match: XP_022137498.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Momordica charantia])

HSP 1 Score: 295.4 bits (755), Expect = 1.1e-76
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. NCBI nr
Match: XP_008439357.1 (PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Cucumis melo] >ADN33965.1 26S proteasome non-ATPase regulatory subunit [Cucumis melo subsp. melo])

HSP 1 Score: 293.9 bits (751), Expect = 3.3e-76
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLS+FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. NCBI nr
Match: XP_022954822.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata])

HSP 1 Score: 292.0 bits (746), Expect = 1.2e-75
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTI+AMA AFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIKAMANAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. TAIR10
Match: AT4G24820.1 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-73
Identity = 134/152 (88.16%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTV+GK+P+LS+FLNSLY+CQYK+FFSAFAG+  QIK DRYL+PHFR+YMR
Sbjct: 236 QKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMR 295

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVT+EAMAKAFGVSV+FID ELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 296 EVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETN 355

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 356 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387

[Close]
BLAST of Carg07578 vs. Swiss-Prot
Match: sp|Q93Y35|PSMD6_ARATH (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN7 PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-72
Identity = 134/152 (88.16%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTV+GK+P+LS+FLNSLY+CQYK+FFSAFAG+  QIK DRYL+PHFR+YMR
Sbjct: 236 QKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMR 295

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVT+EAMAKAFGVSV+FID ELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 296 EVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETN 355

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 356 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387

[Close]
BLAST of Carg07578 vs. Swiss-Prot
Match: sp|Q8W425|PSMD6_ORYSJ (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=RPN7 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-71
Identity = 135/151 (89.40%), Postives = 145/151 (96.03%), Query Frame = 0 

Query: 7   KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMRE 66
           KVVDAPEIL VIGKVP+LS+FLNSLY+CQYKSFF+AF+GLTEQIKLDRYL PHFRYYMRE
Sbjct: 239 KVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMRE 298

Query: 67  VRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNR 126
           VRTVVYSQFLESYKSVT+EAMA AFGV+V+FIDLELSRFIAAGKLHCKIDKVA VLETNR
Sbjct: 299 VRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNR 358

Query: 127 PDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           PD++NA YQATIKQGD LLNRIQKLSRVIDL
Sbjct: 359 PDARNAFYQATIKQGDFLLNRIQKLSRVIDL 389

[Close]
BLAST of Carg07578 vs. Swiss-Prot
Match: sp|Q9V3G7|PSMD6_DROME (26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster OX=7227 GN=Rpn7 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 89/151 (58.94%), Postives = 125/151 (82.78%), Query Frame = 0 

Query: 7   KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMRE 66
           KV+   EI  V+  +P +  FL SLY+CQY++F+   AG+ +Q++LD  +HPH+RYY+RE
Sbjct: 239 KVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVRE 298

Query: 67  VRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNR 126
           +R + Y+Q LESY+S+T++ MA++FGV+VE+ID EL+RFIAAG+LH K+D+V G++ETNR
Sbjct: 299 MRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNR 358

Query: 127 PDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           PD+KN  YQATIKQGD+LLNRIQKLSRVI++
Sbjct: 359 PDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389

[Close]
BLAST of Carg07578 vs. Swiss-Prot
Match: sp|Q15008|PSMD6_HUMAN (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-45
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0 

Query: 2   PACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFR 61
           P   +KV+   EIL V+  +P +  +L SLY+C+Y  FF + A + +++K D    PH+R
Sbjct: 234 PDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYR 293

Query: 62  YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGV 121
           YY+RE+R   YSQ LESY+S+T+  MA+AFGV VEFID ELSRFIAAG+LHCKIDKV  +
Sbjct: 294 YYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEI 353

Query: 122 LETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           +ETNRPDSKN  YQ TIK+GD+LLNR+QKLSRVI++
Sbjct: 354 VETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389

[Close]
BLAST of Carg07578 vs. Swiss-Prot
Match: sp|Q99JI4|PSMD6_MOUSE (26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-45
Identity = 90/156 (57.69%), Postives = 119/156 (76.28%), Query Frame = 0 

Query: 2   PACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFR 61
           P   +KV+   EIL V+  +P +  +L SLY+C+Y  FF + A + +++K D    PH+R
Sbjct: 234 PDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYR 293

Query: 62  YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGV 121
           YY+RE+R   YSQ LESY+S+T+  MA+AFGV V+FID ELSRFIAAG+LHCKIDKV  +
Sbjct: 294 YYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEI 353

Query: 122 LETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           +ETNRPDSKN  YQ TIK+GD+LLNR+QKLSRVI++
Sbjct: 354 VETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389

[Close]
BLAST of Carg07578 vs. TrEMBL
Match: tr|A0A1S3AZ95|A0A1S3AZ95_CUCME (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucumis melo OX=3656 GN=LOC103484168 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.2e-76
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLS+FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. TrEMBL
Match: tr|E5GBW6|E5GBW6_CUCME (26S proteasome non-ATPase regulatory subunit OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.2e-76
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLS+FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. TrEMBL
Match: tr|W9RQY4|W9RQY4_9ROSA (26S proteasome non-ATPase regulatory subunit 6 OS=Morus notabilis OX=981085 GN=L484_006921 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEIL VIGKVPYLSDFLNSLYDCQYKSFF+AFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 253 QKVVDAPEILAVIGKVPYLSDFLNSLYDCQYKSFFTAFAGLTEQIKLDRYLHPHFRYYMR 312

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGV+VEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 313 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 372

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 373 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 404

[Close]
BLAST of Carg07578 vs. TrEMBL
Match: tr|A0A2P5EIC9|A0A2P5EIC9_9ROSA (26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_189630 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 145/152 (95.39%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGK+PYLS+FLNSLYDCQYKSFF+AFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFTAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGV+VEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]
BLAST of Carg07578 vs. TrEMBL
Match: tr|A0A0A0LRF8|A0A0A0LRF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050170 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLS+FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLH HFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHLHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

The following BLAST results are available for this feature:
BLAST of Carg07578 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923807.12.9e-7799.3426S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata] >XP_... [more]
XP_023519947.12.9e-7799.3426S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pe... [more]
XP_022137498.11.1e-7698.6826S proteasome non-ATPase regulatory subunit 6 homolog [Momordica charantia][more]
XP_008439357.13.3e-7698.03PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Cucumis melo]... [more]
XP_022954822.11.2e-7597.3726S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata][more]
BLAST of Carg07578 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24820.11.8e-7388.1626S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain[more]
BLAST of Carg07578 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q93Y35|PSMD6_ARATH3.3e-7288.1626S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana O... [more]
sp|Q8W425|PSMD6_ORYSJ2.1e-7189.4026S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica O... [more]
sp|Q9V3G7|PSMD6_DROME1.3e-4758.9426S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster OX=722... [more]
sp|Q15008|PSMD6_HUMAN1.6e-4558.3326S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 ... [more]
sp|Q99JI4|PSMD6_MOUSE4.5e-4557.6926S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6... [more]
BLAST of Carg07578 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZ95|A0A1S3AZ95_CUCME2.2e-7698.0326S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucumis melo OX=3656 G... [more]
tr|E5GBW6|E5GBW6_CUCME2.2e-7698.0326S proteasome non-ATPase regulatory subunit OS=Cucumis melo subsp. melo OX=4126... [more]
tr|W9RQY4|W9RQY4_9ROSA3.1e-7596.0526S proteasome non-ATPase regulatory subunit 6 OS=Morus notabilis OX=981085 GN=L... [more]
tr|A0A2P5EIC9|A0A2P5EIC9_9ROSA3.1e-7595.3926S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit OS=Trema... [more]
tr|A0A0A0LRF8|A0A0A0LRF8_CUCSA3.1e-7597.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050170 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR035268PSMD6
IPR000717PCI_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0030234 enzyme regulator activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07578-RACarg07578-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 58..141
e-value: 3.4E-22
score: 89.8
NoneNo IPR availableGENE3DG3DSA:1.25.40.570coord: 26..156
e-value: 1.0E-11
score: 46.5
NoneNo IPR availablePANTHERPTHR1414526S PROTESOME SUBUNIT 6coord: 6..157
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 58..141
e-value: 3.4E-22
score: 89.8
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 24..125
e-value: 7.0E-17
score: 61.8
IPR000717Proteasome component (PCI) domainPROSITEPS50250PCIcoord: 1..129
score: 20.881
IPR03526826S Proteasome non-ATPase regulatory subunit 6PANTHERPTHR14145:SF126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6coord: 6..157
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 53..134