Carg07429 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07429
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_019 : 768012 .. 768964 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAAACCCCTTAAAACCCGTTTCTTCTTGCTCCACTACCGTACAGTTCATCATTCCAGAAACCGCTCGAAGCAGACGAGGATGTACACGAGAACAGCTGCTTCCAAATGGTTGAAGCGATTGAGCTTTCGTTCTACAGCATTCAATCGCACTTCCGAAACTCCCACTTCTATCAACGTGCCGATCTTCTCCTCCCGCTGTACGTAATTCAAGCTCTTCAATTAGTTCTTAACTGAATTTGTTGATGCAAAATTGTTGGACCTGCAATTATGTGAATTATAGAAGATTAGGAATAAGTTTTCGCTTGGAGCTAAGTTGTATGATGTTCGAATAACTGAACTGCCATTAGTTCTTAGCTAGCTTGTGTTGCGAGTCATGTTTTGCACTATATAGGAGTAAGAAACCTTGAGACATGTTATTAATCTCCGACCATGAAATCCAGATTGAACTTGGTTTTCAAATTGTTCACGGCATAGAAAAATGATTGAACGGTTCTTTAATTGATTCACAATTCCCCGAATGGCTTTTATTTTCGCTAATCATTTTTTTTTCTTGCAGGCAATGTGAAATCTTCTTCTCGCAATAATAGCAATGACTATCGCGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTCTCTGGACCTGCTGCAGGTCTGCTGTTTTCACCATTTTATGTACGCGTTTCAGTTTTTTTGGTTACTTGTCCATGTATTTGGTCACAGTCAGTGGCTGCTAGCTGGGGCACCTTGTCCTTGGTGGCTAAATTTTGTACAAAATCTCACGGAAGATGAAATTCATGTGTGATATCGAATATGAGACCCTGTCAATGCTTAGATTGCATGCTTTGGATGCTGAATTTCTGTAGGATTTCTCTTGCAAATTGCTCTTAATGAACTTATCCTCGCTACATCATTTCTTGGAAAAGGCATCCATTTCAGTTGAGCTGTAA

mRNA sequence

GCAAAAACCCCTTAAAACCCGTTTCTTCTTGCTCCACTACCGTACAGTTCATCATTCCAGAAACCGCTCGAAGCAGACGAGGATGTACACGAGAACAGCTGCTTCCAAATGGTTGAAGCGATTGAGCTTTCGTTCTACAGCATTCAATCGCACTTCCGAAACTCCCACTTCTATCAACGTGCCGATCTTCTCCTCCCGCTGCAATGTGAAATCTTCTTCTCGCAATAATAGCAATGACTATCGCGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTCTCTGGACCTGCTGCAGGTCTGCTGTTTTCACCATTTTATGATTTCTCTTGCAAATTGCTCTTAATGAACTTATCCTCGCTACATCATTTCTTGGAAAAGGCATCCATTTCAGTTGAGCTGTAA

Coding sequence (CDS)

ATGTACACGAGAACAGCTGCTTCCAAATGGTTGAAGCGATTGAGCTTTCGTTCTACAGCATTCAATCGCACTTCCGAAACTCCCACTTCTATCAACGTGCCGATCTTCTCCTCCCGCTGCAATGTGAAATCTTCTTCTCGCAATAATAGCAATGACTATCGCGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTCTCTGGACCTGCTGCAGGTCTGCTGTTTTCACCATTTTATGATTTCTCTTGCAAATTGCTCTTAATGAACTTATCCTCGCTACATCATTTCTTGGAAAAGGCATCCATTTCAGTTGAGCTGTAA

Protein sequence

MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNGFPWVLFSGPAAGLLFSPFYDFSCKLLLMNLSSLHHFLEKASISVEL

Homology

[Close]

BLAST of Carg07429 vs. NCBI nr
Match: XP_022997758.1 (uncharacterized protein LOC111492620 [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG
Sbjct: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWVLFSGPAA ++
Sbjct: 61 FPWVLFSGPAAAII 74

[Close]

BLAST of Carg07429 vs. NCBI nr
Match: XP_023525053.1 (uncharacterized protein LOC111788782 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG
Sbjct: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWVLFSGPAA ++
Sbjct: 61 FPWVLFSGPAAAII 74

[Close]

BLAST of Carg07429 vs. NCBI nr
Match: XP_022948435.1 (uncharacterized protein LOC111452120 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNN NDYRDGYLNG
Sbjct: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNRNDYRDGYLNG 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWVLFSGPAA ++
Sbjct: 61 FPWVLFSGPAAAII 74

[Close]

BLAST of Carg07429 vs. NCBI nr
Match: XP_008457118.2 (PREDICTED: uncharacterized protein LOC103496867 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTR AASKWLKRLSFRSTAF+ TSE P   NV IFSSRCNVKSSSR NSN Y DGYLNG
Sbjct: 1  MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWV  SGPAA ++
Sbjct: 61 FPWVFLSGPAAAII 74

[Close]

BLAST of Carg07429 vs. NCBI nr
Match: KGN57457.1 (hypothetical protein Csa_3G187310 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.4e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTR AASKWLKRLSFRSTAF+ TS  P   NV IFSSRCN KSSSR NSN Y DGYLN 
Sbjct: 1  MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWVL SGPA+ ++
Sbjct: 61 FPWVLLSGPASAII 74

[Close]

BLAST of Carg07429 vs. TrEMBL
Match: tr|A0A1S3C5G7|A0A1S3C5G7_CUCME (uncharacterized protein LOC103496867 OS=Cucumis melo OX=3656 GN=LOC103496867 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTR AASKWLKRLSFRSTAF+ TSE P   NV IFSSRCNVKSSSR NSN Y DGYLNG
Sbjct: 1  MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWV  SGPAA ++
Sbjct: 61 FPWVFLSGPAAAII 74

[Close]

BLAST of Carg07429 vs. TrEMBL
Match: tr|A0A0A0LA19|A0A0A0LA19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187310 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MYTRTAASKWLKRLSFRSTAFNRTSETPTSINVPIFSSRCNVKSSSRNNSNDYRDGYLNG 60
          MYTR AASKWLKRLSFRSTAF+ TS  P   NV IFSSRCN KSSSR NSN Y DGYLN 
Sbjct: 1  MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61 FPWVLFSGPAAGLL 75
          FPWVL SGPA+ ++
Sbjct: 61 FPWVLLSGPASAII 74

The following BLAST results are available for this feature:

BLAST of Carg07429 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997758.1	3.3e-32	95.95	uncharacterized protein LOC111492620 [Cucurbita maxima]	[more]
XP_023525053.1	3.3e-32	95.95	uncharacterized protein LOC111788782 [Cucurbita pepo subsp. pepo]	[more]
XP_022948435.1	1.3e-31	94.59	uncharacterized protein LOC111452120 [Cucurbita moschata]	[more]
XP_008457118.2	2.8e-23	78.38	PREDICTED: uncharacterized protein LOC103496867 [Cucumis melo]	[more]
KGN57457.1	3.4e-21	74.32	hypothetical protein Csa_3G187310 [Cucumis sativus]	[more]

BLAST of Carg07429 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07429 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07429 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5G7\|A0A1S3C5G7_CUCME	1.9e-23	78.38	uncharacterized protein LOC103496867 OS=Cucumis melo OX=3656 GN=LOC103496867 PE=...	[more]
tr\|A0A0A0LA19\|A0A0A0LA19_CUCSA	2.3e-21	74.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187310 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07429-RA	Carg07429-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07429	Silver-seed gourd	carcarB213
Carg07429	Cucumber (Gy14) v2	carcgybB0758
Carg07429	Cucumber (Gy14) v1	carcgyB0856
Carg07429	Cucurbita maxima (Rimu)	carcmaB1057
Carg07429	Cucurbita maxima (Rimu)	carcmaB1059
Carg07429	Cucurbita moschata (Rifu)	carcmoB1031
Carg07429	Cucurbita moschata (Rifu)	carcmoB1033
Carg07429	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07429	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07429	Wild cucumber (PI 183967)	carcpiB0799
Carg07429	Cucumber (Chinese Long) v2	carcuB0781
Carg07429	Cucumber (Chinese Long) v3	carcucB0802
Carg07429	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07429	Melon (DHL92) v3.5.1	carmeB0756
Carg07429	Melon (DHL92) v3.6.1	carmedB0771
Carg07429	Watermelon (Charleston Gray)	carwcgB0739
Carg07429	Watermelon (97103) v1	carwmB0760
Carg07429	Watermelon (97103) v2	carwmbB0795
Carg07429	Wax gourd	carwgoB0895