Carg07347 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07347
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nucleolin 1
Location	Cucurbita_argyrosperma_scaffold_019 : 264518 .. 265161 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAGAAACAACTCATTCCAGAAAGGAGGAGGAAGGGGTGGTCCAAGCCATACAATTTTTGTTCGTGGTTTTGATCGATCCCTAGGCGAGGACGAGGTAACAAATAATATTATCTTATCTGTGATTTTGTAGCCATGTTACAGTAGTGTTCTGAAATCGTTTTTGTTACAGATTAGAAGTGCCCTACAAGATCATTTTAGTAGTTGTGGAGACGTTACCAGGGTATCCATTCCAAAGGACTACGAGACTGGCAACATCAAAGGGTTTGTATTCTCTACTTCATTTGTGTTTTCCTTCTCCAATCTATCAATTCTGATGTTTTGGCTTTGTCAATTTGTTTTTCCAGAATGGCTTACATGGACTTCAAAGATTCAGATAGTTTCAACAAAGCCCTCGAACTCAATGGCAGCGAACTCAGCGGCGAGTACCTAACAGTGGACGAAGCCAAGCCTCGTGGTGACAGCCGTGATGGTGGTGGTAGTGCAAGAGGAGGATGGAGTGGTGGAAGAAGTGGAGGAGGAAGAAGTGGTGGAAGGAGTGGAGGATGGAGTGGTGGTGATGGCAGAGGAGGAGGAGGACGATTCGGAGGCAGAGGAGGACGAGGCGGCGATCGCGGCGGGAGAGGCGGTAGAGGAGGACGAGGA

mRNA sequence

GACAGAAACAACTCATTCCAGAAAGGAGGAGGAAGGGGTGGTCCAAGCCATACAATTTTTGTTCGTGGTTTTGATCGATCCCTAGGCGAGGACGAGATTAGAAGTGCCCTACAAGATCATTTTAGTAGTTGTGGAGACGTTACCAGGGTATCCATTCCAAAGGACTACGAGACTGGCAACATCAAAGGAATGGCTTACATGGACTTCAAAGATTCAGATAGTTTCAACAAAGCCCTCGAACTCAATGGCAGCGAACTCAGCGGCGAGTACCTAACAGTGGACGAAGCCAAGCCTCGTGGTGACAGCCGTGATGGTGGTGGTAGTGCAAGAGGAGGATGGAGTGGTGGAAGAAGTGGAGGAGGAAGAAGTGGTGGAAGGAGTGGAGGATGGAGTGGTGGTGATGGCAGAGGAGGAGGAGGACGATTCGGAGGCAGAGGAGGACGAGGCGGCGATCGCGGCGGGAGAGGCGGTAGAGGAGGACGAGGA

Coding sequence (CDS)

GACAGAAACAACTCATTCCAGAAAGGAGGAGGAAGGGGTGGTCCAAGCCATACAATTTTTGTTCGTGGTTTTGATCGATCCCTAGGCGAGGACGAGATTAGAAGTGCCCTACAAGATCATTTTAGTAGTTGTGGAGACGTTACCAGGGTATCCATTCCAAAGGACTACGAGACTGGCAACATCAAAGGAATGGCTTACATGGACTTCAAAGATTCAGATAGTTTCAACAAAGCCCTCGAACTCAATGGCAGCGAACTCAGCGGCGAGTACCTAACAGTGGACGAAGCCAAGCCTCGTGGTGACAGCCGTGATGGTGGTGGTAGTGCAAGAGGAGGATGGAGTGGTGGAAGAAGTGGAGGAGGAAGAAGTGGTGGAAGGAGTGGAGGATGGAGTGGTGGTGATGGCAGAGGAGGAGGAGGACGATTCGGAGGCAGAGGAGGACGAGGCGGCGATCGCGGCGGGAGAGGCGGTAGAGGAGGACGAGGA

Protein sequence

DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGSARGGWSGGRSGGGRSGGRSGGWSGGDGRGGGGRFGGRGGRGGDRGGRGGRGGRG

Homology

[Close]

BLAST of Carg07347 vs. NCBI nr
Match: XP_022948794.1 (nucleolin 1-like [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           DRNNSFQK GGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN
Sbjct: 557 DRNNSFQK-GGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 616

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
           IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS
Sbjct: 617 IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 663

[Close]

BLAST of Carg07347 vs. NCBI nr
Match: XP_023525133.1 (nucleolin 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 5.8e-52
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           DRNNSFQK GGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFS+CGDVTRVSIPKDYETGN
Sbjct: 557 DRNNSFQK-GGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSTCGDVTRVSIPKDYETGN 616

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
           IKGMAYMDFKDSDSFNKALELNGSEL+GEYLTVDEAKPRGDSRDGGGS
Sbjct: 617 IKGMAYMDFKDSDSFNKALELNGSELNGEYLTVDEAKPRGDSRDGGGS 663

[Close]

BLAST of Carg07347 vs. NCBI nr
Match: XP_022998396.1 (nucleolin 1-like [Cucurbita maxima])

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           DRNNSFQK GGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFS+CGDVTRVSIPKDYETGN
Sbjct: 557 DRNNSFQK-GGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSTCGDVTRVSIPKDYETGN 616

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
           IKGMAYMDFKD+DSFNKALELNGSEL+GEYLTVDEAKPRGDSRDGGGS
Sbjct: 617 IKGMAYMDFKDADSFNKALELNGSELNGEYLTVDEAKPRGDSRDGGGS 663

[Close]

BLAST of Carg07347 vs. NCBI nr
Match: XP_022934932.1 (nucleolin 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           DRNNSFQK GGRGG SHTIFVRGFDRSLGEDEIRS+LQ+HF SCG++TRVSIPKDYETGN
Sbjct: 468 DRNNSFQK-GGRGGASHTIFVRGFDRSLGEDEIRSSLQEHFGSCGEITRVSIPKDYETGN 527

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGG 108
           +KGMAYMDF D +SFNKALELNGSEL+GEYLTVDEAKPRGDSRDGGG
Sbjct: 528 VKGMAYMDFSDGNSFNKALELNGSELNGEYLTVDEAKPRGDSRDGGG 573

[Close]

BLAST of Carg07347 vs. NCBI nr
Match: XP_022934933.1 (nucleolin 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           DRNNSFQK GGRGG SHTIFVRGFDRSLGEDEIRS+LQ+HF SCG++TRVSIPKDYETGN
Sbjct: 467 DRNNSFQK-GGRGGASHTIFVRGFDRSLGEDEIRSSLQEHFGSCGEITRVSIPKDYETGN 526

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGG 108
           +KGMAYMDF D +SFNKALELNGSEL+GEYLTVDEAKPRGDSRDGGG
Sbjct: 527 VKGMAYMDFSDGNSFNKALELNGSELNGEYLTVDEAKPRGDSRDGGG 572

[Close]

BLAST of Carg07347 vs. TAIR10
Match: AT1G48920.1 (nucleolin like 1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 8   KGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYM 67
           + GG GG    IFV+GFD SL ED+I++ L++HFSSCG++  VS+P D +TGN KG+AY+
Sbjct: 392 RSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451

Query: 68  DFKDSDSFNKALELNGSELSGE-YLTVDEAKPRGDSRDGGG 108
           +F  S+   KALELNGS++ G  YL VDE +PRGDS  GGG
Sbjct: 452 EF--SEGKEKALELNGSDMGGGFYLVVDEPRPRGDSSGGGG 490

[Close]

BLAST of Carg07347 vs. TAIR10
Match: AT3G18610.1 (nucleolin like 2)

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-22
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 11  GRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFK 70
           G G  S TI+VRGF  SLGEDEI+  L+ HFS CG+VTRV +P D ETG  +G AY+D  
Sbjct: 473 GEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL- 532

Query: 71  DSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
            +  F++AL+L+GSE+ G  + V+E++PR DS +G  S
Sbjct: 533 -TSGFDEALQLSGSEIGGGNIHVEESRPR-DSDEGRSS 567

[Close]

BLAST of Carg07347 vs. TAIR10
Match: AT1G72800.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 21  VRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFKDSDSFNKALE 80
           V GFD SL  D+I+SAL  +FSS G++TRV +P  + TG   G AY+D K  +   KALE
Sbjct: 238 VTGFDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALE 297

Query: 81  LNGSELSGEYLTVDEAKP 99
           L   ++ G  L V +A+P
Sbjct: 298 LGRHDVGGWDLVVGKAEP 313

[Close]

BLAST of Carg07347 vs. TAIR10
Match: AT5G03480.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 16  SHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFKDSDSF 75
           S  I V G+D SL E  +R AL  HF+SCG++T++ +P+D++   +K +++M  K   + 
Sbjct: 23  STAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAE 82

Query: 76  NKALELNGSELSGEYLTVDEAKPR 100
           +KAL+L+G+++ G +  + + KP+
Sbjct: 83  DKALQLSGTDVGG-WTVIVKPKPK 105

[Close]

BLAST of Carg07347 vs. TAIR10
Match: AT5G03495.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-10
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 15  PSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFKDSDS 74
           P   I V G+D  L E  ++  L+ HF+SCG +T + +P+D+E G +K +A+M  K    
Sbjct: 27  PWTKISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGG 86

Query: 75  FNKALELNGSELSG 89
             KAL L+G++  G
Sbjct: 87  EEKALLLSGTDAGG 100

[Close]

BLAST of Carg07347 vs. Swiss-Prot
Match: sp|Q6Z1C0|NUCL1_ORYSJ (Nucleolin 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0192900 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 5   SFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGM 64
           SFQK     G S +IFV+GFD SL E +IR +L+ HF+ CG++TRVS+P D ETG  KG+
Sbjct: 401 SFQK--QNRGSSQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGI 460

Query: 65  AYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGG 108
           AY+DFKD  SF+KALEL+GS+L G  L VDEAKP+GDSRDGGG
Sbjct: 461 AYIDFKDQASFSKALELSGSDLGGYNLYVDEAKPKGDSRDGGG 501

[Close]

BLAST of Carg07347 vs. Swiss-Prot
Match: sp|Q7XTT4|NUCL2_ORYSJ (Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-27
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 3   NNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIK 62
           N+SF+K     G  +TIF++GFD SL   +IR++L++HF SCG++TRVSIPKDYETG  K
Sbjct: 537 NSSFKKPAQSSG--NTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASK 596

Query: 63  GMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGG 108
           GMAYMDF D+ S +KA ELNGS+L G  L VDEA+PR D+   GG
Sbjct: 597 GMAYMDFADNGSLSKAYELNGSDLGGYSLYVDEARPRPDNNREGG 639

[Close]

BLAST of Carg07347 vs. Swiss-Prot
Match: sp|Q9FVQ1|NUCL1_ARATH (Nucleolin 1 OS=Arabidopsis thaliana OX=3702 GN=NUCL1 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 8   KGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYM 67
           + GG GG    IFV+GFD SL ED+I++ L++HFSSCG++  VS+P D +TGN KG+AY+
Sbjct: 392 RSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451

Query: 68  DFKDSDSFNKALELNGSELSGE-YLTVDEAKPRGDSRDGGG 108
           +F  S+   KALELNGS++ G  YL VDE +PRGDS  GGG
Sbjct: 452 EF--SEGKEKALELNGSDMGGGFYLVVDEPRPRGDSSGGGG 490

[Close]

BLAST of Carg07347 vs. Swiss-Prot
Match: sp|Q1PEP5|NUCL2_ARATH (Nucleolin 2 OS=Arabidopsis thaliana OX=3702 GN=NUCL2 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 11  GRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFK 70
           G G  S TI+VRGF  SLGEDEI+  L+ HFS CG+VTRV +P D ETG  +G AY+D  
Sbjct: 473 GEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL- 532

Query: 71  DSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
            +  F++AL+L+GSE+ G  + V+E++PR DS +G  S
Sbjct: 533 -TSGFDEALQLSGSEIGGGNIHVEESRPR-DSDEGRSS 567

[Close]

BLAST of Carg07347 vs. Swiss-Prot
Match: sp|P41891|GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gar2 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 15  PSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIKGMAYMDFKDSDS 74
           PS T+FV     +  ED++ +A    F  CGD+  + +P D ++G +KG  Y+ F D DS
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTA----FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 423

Query: 75  FNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
             K +E+NG  ++G    +D + P    R GGGS
Sbjct: 424 AKKCVEMNGHFIAGRPCRLDFSTP----RTGGGS 449

[Close]

BLAST of Carg07347 vs. TrEMBL
Match: tr|A0A1S3CH06|A0A1S3CH06_CUCME (nucleolin 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500357 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.5e-45
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           +RNNSFQKGG   GPS T+FVRGFDRS GEDEIRSALQ+HF +CGD+TRVSIPKDYETGN
Sbjct: 483 ERNNSFQKGG--RGPSQTVFVRGFDRSSGEDEIRSALQEHFGACGDITRVSIPKDYETGN 542

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
           +KGMAYMDF DSDSFNKALELNGSEL G YLTV+EAKPRGDSRDGGGS
Sbjct: 543 VKGMAYMDFGDSDSFNKALELNGSELHGNYLTVEEAKPRGDSRDGGGS 588

[Close]

BLAST of Carg07347 vs. TrEMBL
Match: tr|A0A1S3CG57|A0A1S3CG57_CUCME (nucleolin 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500357 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.5e-45
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           +RNNSFQKGG   GPS T+FVRGFDRS GEDEIRSALQ+HF +CGD+TRVSIPKDYETGN
Sbjct: 484 ERNNSFQKGG--RGPSQTVFVRGFDRSSGEDEIRSALQEHFGACGDITRVSIPKDYETGN 543

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGGS 109
           +KGMAYMDF DSDSFNKALELNGSEL G YLTV+EAKPRGDSRDGGGS
Sbjct: 544 VKGMAYMDFGDSDSFNKALELNGSELHGNYLTVEEAKPRGDSRDGGGS 589

[Close]

BLAST of Carg07347 vs. TrEMBL
Match: tr|A0A0A0LC82|A0A0A0LC82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653460 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   DRNNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGN 60
           +RNNSFQKGG   GPS T+FVRGFDRSLGEDE      DHF +CGD+ RVSIPKDYETGN
Sbjct: 522 ERNNSFQKGG--RGPSQTVFVRGFDRSLGEDE------DHFGACGDINRVSIPKDYETGN 581

Query: 61  IKGMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDS 103
           +KGMAYMDF DSDSFNKALELNGSEL G YLTVDEAKPRGDS
Sbjct: 582 VKGMAYMDFGDSDSFNKALELNGSELHGNYLTVDEAKPRGDS 615

[Close]

BLAST of Carg07347 vs. TrEMBL
Match: tr|A0A199USM2|A0A199USM2_ANACO (Nucleolin 2 OS=Ananas comosus OX=4615 GN=ACMD2_25698 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.4e-35
Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 3   NNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIK 62
           N S+QKGG   G   TIFVRGFD+SL ED+IRS+L++HF SCG+VTR+S+PKDYE+G+ K
Sbjct: 51  NASYQKGG--KGSGQTIFVRGFDKSLEEDQIRSSLEEHFGSCGEVTRISLPKDYESGSFK 110

Query: 63  GMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGG 108
           G+AYMDFKD D+FNK+LELNGS+L+G  LTV+EAKPR DSRDGGG
Sbjct: 111 GIAYMDFKDQDAFNKSLELNGSDLNGYNLTVEEAKPRTDSRDGGG 153

[Close]

BLAST of Carg07347 vs. TrEMBL
Match: tr|A0A199UFK7|A0A199UFK7_ANACO (Nucleolin 2 OS=Ananas comosus OX=4615 GN=ACMD2_00530 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.4e-35
Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 3   NNSFQKGGGRGGPSHTIFVRGFDRSLGEDEIRSALQDHFSSCGDVTRVSIPKDYETGNIK 62
           N S+QKGG   G   TIFVRGFD+SL ED+IRS+L++HF SCG+VTR+S+PKDYE+G+ K
Sbjct: 539 NASYQKGG--KGSGQTIFVRGFDKSLEEDQIRSSLEEHFGSCGEVTRISLPKDYESGSFK 598

Query: 63  GMAYMDFKDSDSFNKALELNGSELSGEYLTVDEAKPRGDSRDGGG 108
           G+AYMDFKD D+FNK+LELNGS+L+G  LTV+EAKPR DSRDGGG
Sbjct: 599 GIAYMDFKDQDAFNKSLELNGSDLNGYNLTVEEAKPRTDSRDGGG 641

The following BLAST results are available for this feature:

BLAST of Carg07347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948794.1	1.2e-52	99.07	nucleolin 1-like [Cucurbita moschata]	[more]
XP_023525133.1	5.8e-52	97.22	nucleolin 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998396.1	1.3e-51	96.30	nucleolin 1-like [Cucurbita maxima]	[more]
XP_022934932.1	2.5e-47	88.79	nucleolin 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022934933.1	2.5e-47	88.79	nucleolin 1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg07347 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48920.1	1.7e-26	56.44	nucleolin like 1	[more]
AT3G18610.1	5.8e-22	52.04	nucleolin like 2	[more]
AT1G72800.1	1.2e-11	46.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G03480.1	2.1e-11	35.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G03495.1	3.9e-10	37.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg07347 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6Z1C0\|NUCL1_ORYSJ	2.1e-29	63.11	Nucleolin 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0192900 PE=2 SV=1	[more]
sp\|Q7XTT4\|NUCL2_ORYSJ	3.4e-27	59.05	Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2	[more]
sp\|Q9FVQ1\|NUCL1_ARATH	3.1e-25	56.44	Nucleolin 1 OS=Arabidopsis thaliana OX=3702 GN=NUCL1 PE=1 SV=1	[more]
sp\|Q1PEP5\|NUCL2_ARATH	1.0e-20	52.04	Nucleolin 2 OS=Arabidopsis thaliana OX=3702 GN=NUCL2 PE=1 SV=1	[more]
sp\|P41891\|GAR2_SCHPO	2.9e-10	36.17	Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Carg07347 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CH06\|A0A1S3CH06_CUCME	4.5e-45	85.19	nucleolin 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500357 PE=4 SV=1	[more]
tr\|A0A1S3CG57\|A0A1S3CG57_CUCME	4.5e-45	85.19	nucleolin 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500357 PE=4 SV=1	[more]
tr\|A0A0A0LC82\|A0A0A0LC82_CUCSA	2.0e-37	80.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653460 PE=4 SV=1	[more]
tr\|A0A199USM2\|A0A199USM2_ANACO	9.4e-35	70.48	Nucleolin 2 OS=Ananas comosus OX=4615 GN=ACMD2_25698 PE=4 SV=1	[more]
tr\|A0A199UFK7\|A0A199UFK7_ANACO	9.4e-35	70.48	Nucleolin 2 OS=Ananas comosus OX=4615 GN=ACMD2_00530 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07347-RA	Carg07347-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..94 e-value: 1.7E-13 score: 60.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..91 e-value: 2.8E-14 score: 52.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..98 score: 15.886
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..115 e-value: 1.9E-20 score: 75.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..162
None	No IPR available	PANTHER	PTHR23236:SF11	EUKARYOTIC TRANSLATION INITIATION FACTOR 4H	coord: 37..160
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 37..160
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 14..128

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07347	Cla017311	Watermelon (97103) v1	carwmB0759
Carg07347	Csa3G653460	Cucumber (Chinese Long) v2	carcuB0777
Carg07347	MELO3C024024	Melon (DHL92) v3.5.1	carmeB0755
Carg07347	ClCG10G011940	Watermelon (Charleston Gray)	carwcgB0738
Carg07347	CSPI03G29040	Wild cucumber (PI 183967)	carcpiB0795
Carg07347	CmaCh14G009680	Cucurbita maxima (Rimu)	carcmaB1057
Carg07347	CmaCh01G002540	Cucurbita maxima (Rimu)	carcmaB1059
Carg07347	CmoCh14G009920	Cucurbita moschata (Rifu)	carcmoB1031
Carg07347	CmoCh01G002650	Cucurbita moschata (Rifu)	carcmoB1033
Carg07347	Lsi03G011650	Bottle gourd (USVL1VR-Ls)	carlsiB699
Carg07347	Cp4.1LG03g04840	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07347	Cp4.1LG02g15850	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07347	CsGy3G026910	Cucumber (Gy14) v2	carcgybB0754
Carg07347	MELO3C024024.2	Melon (DHL92) v3.6.1	carmedB0770
Carg07347	CsaV3_3G031420	Cucumber (Chinese Long) v3	carcucB0798
Carg07347	Cla97C10G194760	Watermelon (97103) v2	carwmbB0794
Carg07347	Bhi11G001132	Wax gourd	carwgoB0894

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07347	Carg11192	Silver-seed gourd	carcarB605

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07347	Silver-seed gourd	carcarB132
Carg07347	Silver-seed gourd	carcarB453
Carg07347	Cucumber (Gy14) v2	carcgybB0756
Carg07347	Cucumber (Gy14) v2	carcgybB0760
Carg07347	Cucumber (Gy14) v1	carcgyB0857
Carg07347	Cucumber (Gy14) v1	carcgyB0860
Carg07347	Cucumber (Gy14) v1	carcgyB0861
Carg07347	Cucurbita maxima (Rimu)	carcmaB1058
Carg07347	Cucurbita maxima (Rimu)	carcmaB1060
Carg07347	Cucurbita moschata (Rifu)	carcmoB1032
Carg07347	Cucurbita moschata (Rifu)	carcmoB1034
Carg07347	Cucurbita pepo (Zucchini)	carcpeB1070
Carg07347	Cucurbita pepo (Zucchini)	carcpeB1071
Carg07347	Wild cucumber (PI 183967)	carcpiB0797
Carg07347	Wild cucumber (PI 183967)	carcpiB0801
Carg07347	Cucumber (Chinese Long) v2	carcuB0779
Carg07347	Cucumber (Chinese Long) v2	carcuB0783
Carg07347	Cucumber (Chinese Long) v3	carcucB0800
Carg07347	Cucumber (Chinese Long) v3	carcucB0804
Carg07347	Bottle gourd (USVL1VR-Ls)	carlsiB697
Carg07347	Melon (DHL92) v3.5.1	carmeB0753
Carg07347	Melon (DHL92) v3.6.1	carmedB0768
Carg07347	Watermelon (Charleston Gray)	carwcgB0735
Carg07347	Watermelon (97103) v1	carwmB0757
Carg07347	Watermelon (97103) v2	carwmbB0796
Carg07347	Wax gourd	carwgoB0897