Carg07346 (gene) Silver-seed gourd

Overview
NameCarg07346
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLysM and putative peptidoglycan-binding domain-containing protein
LocationCucurbita_argyrosperma_scaffold_019 : 260374 .. 263557 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTGGAGTTGTTTTGATGAAATTGGCGTGGGTTTGGATTGATTTTGAATCTTGGGTGATTCAATGATGGTTTCATTTCTTGACGGAAATTGATTTGGATGGTGGATTTGAGAGACGCAGATGGAAAGGGGGCGGATGAACGGAAATGGGATTTGTGATTATAGTTACGAGGGCAATGGTTTTCATGCGTTAGATCTTGTGGATGTCTATGGAGGAGAGAGCACGCCGAATGGAAGAAGCTCTGGGAAGACCTCGCAGGGTTCATCTCCTACTAGTTGCATCCTGCATCCAGTATCGAAATTAGATACTCTTGCTGGAGTTGCAATCAAATACGGTGTCGAGGTAAGCCGCACTTGAGAATTTTAGATATTTCTTTGATGAAATGGGAATTTTTGTAATGAGCATTCGTTTGTATCGTTCTCAACTTTAGTTAAATTGCTGTTGTGATGGAGAAACAATGGAAATGATTAGTTCAAATTCTTTTTGCTTTTCTGATATTCGCGTGTCAGTGTTGCTTTATTAATGAATCTTATCATCTGCACCGACAAGGCTAGAGTTTATCTCTTTCCCTTTTGGCAGGCATGATTTCTTAGAAAACCATATCGATGTGAACTCAATCGGGCCTTAAATTTTCTGTTATGATCAAATGAGGCTTATGGCGGATTCATCTCGAGAATGGAATGAATCATAACAAATTATCATTATTTTTCCCTCATGAGATAATCATTAGACTTGTATGGACTATGTGCAGATGTTCGTAAGACCTTTTTTTTTTTTTTCCTGTTCTCCCCCCCTTGATTTTACCTTTTTGAAGTCTATAGTTTAAAGGGACCGAGCGCCGGAGCCATAGTTTTTTTGTTGGGGAGCAAACATATATGAAAATAAAATTTAACAAAAATTGAGAAACTGGCCTAAAATCAAACAATAATTCATAAGGCGAATTGTCAATTGAAAATTTTCTTATCGAAAAAATATAAGAAATCAAAAGGACAAAATCCTTGTCTCAGTTAACTTTTAGAACTTAGATTTGAAGAACGTGGTTGACAATTTTATACCCTTCACTTGTAACCAAGGGTTTAAAAGTGGCCCACCATAGTGTGGAGGCAAAATTTTCTCTTCACTTGGTTGCCCCGTTTAATAGTAAGAGGTTGATAGTGCGCAATTGTGATGAATATCGACTTTCTTCTTCTTGTTGTGGTCAGTATGTAGAGAAATTTTTACTCCAAAGTCATGGACCATTTCATTCATCCCTCATTCATATTTTTTGTTATCTGATTGCACTTATAGCATAGCTGATCCAAGCACACGCTTCAATGGGCATAGCACACTATCATTCCGTCTTTGTATGTTATGTTTTGGAATAACTTAAGTGGATCTATTTAGGAGAAAAATGTAATTTTGGTTTTTGATGATTCGCCAGGTTGCAGATATAAGGAAGATGAATGGGCTAGTCACAGATTTTCAAATGTTTGCTCTTAAATCTCTCCAGATTCCTCTTCCTGGAAGGCATCCTCCTTCTCCTTGCTTACTGGAAGAGCTAAGTACACCAGGGTACGTGTATTGATTATCATATGTTTCCACATTATTGCACACGAGTGACGTAAGTTGAGTGCATGTTTGCCATTTTTGACATTTTTTCCCCTGAGATTGCTATGGCTATGGCTATGTCTCGTTGAGCTGTGTCCAATGCCTTGTTTGATCCATGGTAGTGACTTGCAGAATCATCAGTTATTGGTCATATAGGACTTGAGGTTAAGGGTGGGGTTCAAGTAGTGTTGCTACTTGTAGAACCGTGCTTTGAGTGGACTAAGCGAAGCCATTAAGAAAGAAAATTTGAGTGGAGCCAGCGCCATGCTTTGATGTTGATGCCTGGACGTCTTAGGGCCCTTTAGGTTCTTTTTTTTGATGGAGGTGATGGGATGGAATAGTGTATACTGATAATTCTTTTGCTGTAGGAATTGTTGGTGATGGTTGGAGAGTGGCCCTGATTATAAGTGGATGCTATTGTGATGGCAATATCGTTCTCAGGTGCTTTGTTGATACAAGATTTAAAGCTGCCCAACTTCATCTTGAATTAAAATAAATAAATAAATAAAATCATTATGAATTAATATCCTTCGAGTCTCATTAATGGCATCCATCAGAAATATAGTACCACTAGGAAATGTATCCTGCATCTTTGATTTCATTTGCAAAAACTTTGCCTGGAATTCTTTATGCTCAAGTATGCAAATTTCTTATCGTTCATTTCAAGAGATTTGTCAAGTACATTGTGCCCATTACAACTATTAAATTAGAGGCGGAGATGGAATTAGAAAGACTTTAAGTTTTCCAATATTTTGCTGGCCAACCCATCATCTTGTGTTTGATAAAAGAGAATCATTTTGCAGACAAAGCAGCTCCGAAAGGACTCCAAGTGCACGTCTTTCATCGGATTTCTTTGAATCATTCCAATCCCTCAAACTGAAGTCTTCCGAACAAAGGATCTCCTCAGCCATGAGCTCTTTACAAGGTTACTATGGCCTCAAACCATCTGACCAGAGGAGCAGAATCAATGGTTTCGACACGGCAGTCTACAGTGAAGGAGCCTCTCATGATTCAGAAGACATGCTTGTTTCTGGGACCTCACAGGATTTGGATTTACTAATGCCTCACCATCGAAAATCCAGGAGTTCAGTGAATGGATTTCTGGGTGAGAAAGTAGAGGTGGCTGATCTGCAATCTGCAGAAGCTGGCGGCGATGGGGATCCCAAATGGAATGACAAATTGGTAAGAAGGCGCCAGAAATCTGTAGCTGACTTTTCCCATTCCCCTGAAATGCTCTTGAAAGATGACAACAGTAGTGGAAGTAACGGATTCTCATCCTCGGCTGGAAAGGGCCTTTTGGCTCAAAGACCCAAAACATCTAGCAGAACTAATTTGGCAACTGACAATGCGGTTGGATTGATTCCAATTCCAATAGGTTTGGGGGATTCATATGTGGCCGTTGATGGGTTTGCTGGGGTAAGGAAGTCATTGAGCACATCCAGTTTGCCGGATCCGGAGAATGGCAATACTTCATCAATTTGGTCTGCTTCAAAGTGGAGTTTGAAACCGGATTTACAGGCAATTTCAACTGCTTCAGGCTTGCCAAAACCTTTGACGGGTCGAAGAAACAAAGCTGCACTCGATTAGTTCCATCTG

mRNA sequence

TTTGTGGAGTTGTTTTGATGAAATTGGCGTGGGTTTGGATTGATTTTGAATCTTGGGTGATTCAATGATGGTTTCATTTCTTGACGGAAATTGATTTGGATGGTGGATTTGAGAGACGCAGATGGAAAGGGGGCGGATGAACGGAAATGGGATTTGTGATTATAGTTACGAGGGCAATGGTTTTCATGCGTTAGATCTTGTGGATGTCTATGGAGGAGAGAGCACGCCGAATGGAAGAAGCTCTGGGAAGACCTCGCAGGGTTCATCTCCTACTAGTTGCATCCTGCATCCAGTATCGAAATTAGATACTCTTGCTGGAGTTGCAATCAAATACGGTGTCGAGGTTGCAGATATAAGGAAGATGAATGGGCTAGTCACAGATTTTCAAATGTTTGCTCTTAAATCTCTCCAGATTCCTCTTCCTGGAAGGCATCCTCCTTCTCCTTGCTTACTGGAAGAGCTAAGTACACCAGGGAATTGTTGGTGATGGTTGGAGAGTGGCCCTGATTATAAGTGGATGCTATTGTGATGGCAATATCGTTCTCAGACAAAGCAGCTCCGAAAGGACTCCAAGTGCACGTCTTTCATCGGATTTCTTTGAATCATTCCAATCCCTCAAACTGAAGTCTTCCGAACAAAGGATCTCCTCAGCCATGAGCTCTTTACAAGGTTACTATGGCCTCAAACCATCTGACCAGAGGAGCAGAATCAATGGTTTCGACACGGCAGTCTACAGTGAAGGAGCCTCTCATGATTCAGAAGACATGCTTGTTTCTGGGACCTCACAGGATTTGGATTTACTAATGCCTCACCATCGAAAATCCAGGAGTTCAGTGAATGGATTTCTGGGTGAGAAAGTAGAGGTGGCTGATCTGCAATCTGCAGAAGCTGGCGGCGATGGGGATCCCAAATGGAATGACAAATTGGTAAGAAGGCGCCAGAAATCTGTAGCTGACTTTTCCCATTCCCCTGAAATGCTCTTGAAAGATGACAACAGTAGTGGAAGTAACGGATTCTCATCCTCGGCTGGAAAGGGCCTTTTGGCTCAAAGACCCAAAACATCTAGCAGAACTAATTTGGCAACTGACAATGCGGTTGGATTGATTCCAATTCCAATAGGTTTGGGGGATTCATATGTGGCCGTTGATGGGTTTGCTGGGGTAAGGAAGTCATTGAGCACATCCAGTTTGCCGGATCCGGAGAATGGCAATACTTCATCAATTTGGTCTGCTTCAAAGTGGAGTTTGAAACCGGATTTACAGGCAATTTCAACTGCTTCAGGCTTGCCAAAACCTTTGACGGGTCGAAGAAACAAAGCTGCACTCGATTAGTTCCATCTG

Coding sequence (CDS)

ATGAGCTCTTTACAAGGTTACTATGGCCTCAAACCATCTGACCAGAGGAGCAGAATCAATGGTTTCGACACGGCAGTCTACAGTGAAGGAGCCTCTCATGATTCAGAAGACATGCTTGTTTCTGGGACCTCACAGGATTTGGATTTACTAATGCCTCACCATCGAAAATCCAGGAGTTCAGTGAATGGATTTCTGGGTGAGAAAGTAGAGGTGGCTGATCTGCAATCTGCAGAAGCTGGCGGCGATGGGGATCCCAAATGGAATGACAAATTGGTAAGAAGGCGCCAGAAATCTGTAGCTGACTTTTCCCATTCCCCTGAAATGCTCTTGAAAGATGACAACAGTAGTGGAAGTAACGGATTCTCATCCTCGGCTGGAAAGGGCCTTTTGGCTCAAAGACCCAAAACATCTAGCAGAACTAATTTGGCAACTGACAATGCGGTTGGATTGATTCCAATTCCAATAGGTTTGGGGGATTCATATGTGGCCGTTGATGGGTTTGCTGGGGTAAGGAAGTCATTGAGCACATCCAGTTTGCCGGATCCGGAGAATGGCAATACTTCATCAATTTGGTCTGCTTCAAAGTGGAGTTTGAAACCGGATTTACAGGCAATTTCAACTGCTTCAGGCTTGCCAAAACCTTTGACGGGTCGAAGAAACAAAGCTGCACTCGATTAG

Protein sequence

MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSSVNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNGFSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLPDPENGNTSSIWSASKWSLKPDLQAISTASGLPKPLTGRRNKAALD
Homology
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BLAST of Carg07346 vs. NCBI nr
Match: XP_022948795.1 (uncharacterized protein LOC111452356 [Cucurbita moschata])

HSP 1 Score: 439.5 bits (1129), Expect = 6.9e-120
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS
Sbjct: 154 MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 213

Query: 61  VNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG 120
           VNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG
Sbjct: 214 VNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG 273

Query: 121 FSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP 180
           FSSSAGKGLLAQRPKTSSRTNLA+DNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP
Sbjct: 274 FSSSAGKGLLAQRPKTSSRTNLASDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP 333

Query: 181 DPENGNTSSIWSASKWSLKPDLQAISTASGLPKPLTGRRNKAALD 226
           DPENGNTSSIWSASKWSLKPDLQAISTASGLPKPLTGRRNKAALD
Sbjct: 334 DPENGNTSSIWSASKWSLKPDLQAISTASGLPKPLTGRRNKAALD 378

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BLAST of Carg07346 vs. NCBI nr
Match: XP_023524813.1 (uncharacterized protein LOC111788632 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426.4 bits (1095), Expect = 6.0e-116
Identity = 221/230 (96.09%), Postives = 223/230 (96.96%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQ LDLLMPHHRKSRSS
Sbjct: 154 MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQYLDLLMPHHRKSRSS 213

Query: 61  VNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG 120
           VNGFLG+KVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG
Sbjct: 214 VNGFLGDKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG 273

Query: 121 FSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP 180
           FSSSAGKGLLAQRPKTSSRTNLA+DNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP
Sbjct: 274 FSSSAGKGLLAQRPKTSSRTNLASDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP 333

Query: 181 DPENGNTSSIWSASKWSLKPDLQAISTAS-----GLPKPLTGRRNKAALD 226
           DPENGN SSIWSASKWSLKPDLQAISTAS     GLPKPLTGRRNKAALD
Sbjct: 334 DPENGNPSSIWSASKWSLKPDLQAISTASRPMFDGLPKPLTGRRNKAALD 383

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BLAST of Carg07346 vs. NCBI nr
Match: XP_022998455.1 (uncharacterized protein LOC111493082 [Cucurbita maxima])

HSP 1 Score: 412.9 bits (1060), Expect = 6.9e-112
Identity = 214/230 (93.04%), Postives = 219/230 (95.22%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKPSDQRSR+NGFD AVYSEGASHDSEDM+VSGTSQDLDLLM HHRKSRSS
Sbjct: 154 MSSLQGYYGLKPSDQRSRVNGFDAAVYSEGASHDSEDMVVSGTSQDLDLLMHHHRKSRSS 213

Query: 61  VNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSNG 120
           VNGFLGEKVEVADL SAEAGGDGDPKWNDKLVRRRQKSVADFS+SPEMLLKDD+SSGSNG
Sbjct: 214 VNGFLGEKVEVADLLSAEAGGDGDPKWNDKLVRRRQKSVADFSYSPEMLLKDDHSSGSNG 273

Query: 121 FSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP 180
           FSSSAGK LLAQRPKTSSR NLA+DNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP
Sbjct: 274 FSSSAGKSLLAQRPKTSSRANLASDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSLP 333

Query: 181 DPENGNTSSIWSASKWSLKPDLQAISTAS-----GLPKPLTGRRNKAALD 226
           DPENGNTSSIW ASKWSLKPDLQAISTAS     GLPKPLTGRRNKAALD
Sbjct: 334 DPENGNTSSIWFASKWSLKPDLQAISTASRPMFDGLPKPLTGRRNKAALD 383

[Close]
BLAST of Carg07346 vs. NCBI nr
Match: XP_022153133.1 (uncharacterized protein LOC111020702 [Momordica charantia])

HSP 1 Score: 330.1 bits (845), Expect = 5.9e-87
Identity = 182/232 (78.45%), Postives = 198/232 (85.34%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLD-LLMPHHRKSRS 60
           MSSLQGYYGLK SDQ+SR +GF+ AV+ +G SH  ED+ +SGT Q  D LLM HHRKS+S
Sbjct: 153 MSSLQGYYGLKSSDQKSRNDGFEMAVW-KGTSHYLEDVPISGTQQLSDLLLMHHHRKSKS 212

Query: 61  SVNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSSGSN 120
            VNGF+GEK  +AD+QSAEA GD DPKWN+KL+RRRQKSVADFSHSPEM+LKDDNSSGSN
Sbjct: 213 LVNGFVGEKGAMADVQSAEA-GDVDPKWNEKLIRRRQKSVADFSHSPEMVLKDDNSSGSN 272

Query: 121 GFSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGF-AGVRKSLSTSS 180
           GFSSSAGKG LAQRPK SSRTNLA DN VGLIPIPIGLGDS+VA DGF A VRKS STSS
Sbjct: 273 GFSSSAGKGFLAQRPKASSRTNLAIDNEVGLIPIPIGLGDSFVAADGFSAVVRKSSSTSS 332

Query: 181 LPDPENGNTSSIWSASKWSLKPDLQAISTAS-----GLPKPLTGRRNKAALD 226
           LPDPENG TSSIWS SKWSLKPDLQAIS+AS     GLP PLTGRRNKAALD
Sbjct: 333 LPDPENGTTSSIWSTSKWSLKPDLQAISSASRPIFDGLPIPLTGRRNKAALD 382

[Close]
BLAST of Carg07346 vs. NCBI nr
Match: XP_022934623.1 (uncharacterized protein LOC111441757 [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 177/232 (76.29%), Postives = 194/232 (83.62%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRIN-GFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRS 60
           MSSLQGYYGLKP DQ+S+I+ G++ AVY +G SH  ED+ VSGT    DLL  HHRK++S
Sbjct: 154 MSSLQGYYGLKPLDQKSKIDGGYEMAVYGKGGSHYLEDVPVSGTP---DLLTHHHRKTKS 213

Query: 61  SVNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSS-GS 120
            VNGFLGEK ++ DLQS EA GDGDPKWNDKL+RRR KSVADFSH+PEMLLKDDNSS GS
Sbjct: 214 LVNGFLGEKGDLTDLQSVEA-GDGDPKWNDKLIRRRLKSVADFSHTPEMLLKDDNSSGGS 273

Query: 121 NGFSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSS 180
           NGFSS+AGKG LAQRPKTSSRTNLA+DN +GLIPIPIGLGDS+VA DGF   RKS STSS
Sbjct: 274 NGFSSNAGKG-LAQRPKTSSRTNLASDNDIGLIPIPIGLGDSFVAADGF---RKSSSTSS 333

Query: 181 LPDPENGNTSSIWSASKWSLKPDLQAISTAS-----GLPKPLTGRRNKAALD 226
           LPD ENG  SSIWSASKWSLKPDLQAIST S     GLP PLTGRRNKAALD
Sbjct: 334 LPDQENGIASSIWSASKWSLKPDLQAISTVSRPIFDGLPIPLTGRRNKAALD 377

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BLAST of Carg07346 vs. TAIR10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 162.2 bits (409), Expect = 3.8e-40
Identity = 114/234 (48.72%), Postives = 141/234 (60.26%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGAS--HDSEDMLVSGTSQDLDLLMPHHRKSR 60
           M+SLQGYYGLKP ++R+   GF  AVY   AS   D++  L    +    L   HHRKSR
Sbjct: 173 MNSLQGYYGLKPKNRRAS-EGFGMAVYKNEASQLQDNDQYLTPFPATSTPL--SHHRKSR 232

Query: 61  SSVNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADF-SHSPEMLLKDDNSSG 120
           S V+  +    EV    +    G G+    DK +RRRQKS ADF S +PE+LLK++N S 
Sbjct: 233 SLVDAVI---AEVNQSPNPSKAGGGEVNSTDKPMRRRQKSEADFSSRAPELLLKEENRSS 292

Query: 121 SNGFSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTS 180
           S  FS+ AGK  LA R K SSR NL+ +    L  IPI L D+ V  D F+ VRKS+S S
Sbjct: 293 SGAFSAIAGKN-LALRSKASSRANLSAETR-HLNSIPINLMDAPVG-DSFSSVRKSVSAS 352

Query: 181 SLPDPE-NGNTSSIWSASKWSLKPDL-----QAISTASGLPKPLTGRRNKAALD 226
           SL +P  N N SS+W  SKW+LKP+L      A S   GLPKPLTGRRNK A+D
Sbjct: 353 SLQEPNCNSNGSSLWPTSKWTLKPELLTQVAMASSIFDGLPKPLTGRRNKKAVD 397

[Close]
BLAST of Carg07346 vs. TAIR10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 112/239 (46.86%), Postives = 143/239 (59.83%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRING-FDTAVYSEGASH---DSEDMLVSGTSQDLDLLMPHHRK 60
           M SLQGYYGLKP+D+     G F+   Y    SH   ++ D          +  + HHRK
Sbjct: 180 MYSLQGYYGLKPADRTVSDGGCFEMGNYKTETSHHIFNNGDNGYLRPFPSTNTPLNHHRK 239

Query: 61  SRSSVNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADF-SHSPEMLLKDDNS 120
           SRS VN  + E  +  D  + E         +DK +RRRQKS ADF S +PE++LK++N 
Sbjct: 240 SRSLVNALIEEVNQSPDNNTQE-------PTSDKFMRRRQKSEADFSSRTPELVLKEENG 299

Query: 121 SGSNGFSSSAGKGLLAQRPKTSSRTNLATDNAVG-LIPIPIGLGDSYVAVDGFAGVRKSL 180
           S + GF S AGKG LA R K SSRTNLA ++  G   P+ + L D+ V+ D F+ VRKS 
Sbjct: 300 SSNGGFLSIAGKG-LALRSKASSRTNLAAESENGNFNPVSMNLMDAPVS-DSFSSVRKSS 359

Query: 181 STSSLPDPE---NGNTSSIWSASKWSLKPDL---QAISTA--SGLPKPLTGRRNKAALD 226
           S SSL DP+   N  + S+W  SKWSLKPDL    AI+++   GLPKPLTGRRNK ALD
Sbjct: 360 SASSLQDPDGNSNNGSLSLWPTSKWSLKPDLLTPAAITSSIFDGLPKPLTGRRNKTALD 409

[Close]
BLAST of Carg07346 vs. TrEMBL
Match: tr|A0A1S3CG46|A0A1S3CG46_CUCME (uncharacterized protein LOC103500354 OS=Cucumis melo OX=3656 GN=LOC103500354 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 7.3e-78
Identity = 168/231 (72.73%), Postives = 186/231 (80.52%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKPSDQ++R  G + A+Y +GASH  ED+ VSGTS  LDLL  HH+KS+S 
Sbjct: 153 MSSLQGYYGLKPSDQKNRTVGLEMALYRKGASHYLEDVPVSGTSHHLDLLTHHHKKSKSL 212

Query: 61  VNGFLGEKVEVADLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDNSS-GSN 120
           VNG LGEK EV+DLQS EA GDGD K +DKL+RRRQKSVADFS+SPE+LL+D+NSS GSN
Sbjct: 213 VNGCLGEKGEVSDLQSIEA-GDGDSKLSDKLIRRRQKSVADFSNSPELLLRDENSSGGSN 272

Query: 121 GFSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTSSL 180
           GFSSS GKGLLAQRPKTSSRTNLA+DN  GLIPIPIGLGDS+ A DGFA  RKS STSSL
Sbjct: 273 GFSSSGGKGLLAQRPKTSSRTNLASDNEGGLIPIPIGLGDSFAAADGFAAFRKSSSTSSL 332

Query: 181 PDPENGNTSSIWSASKWSLKPDLQAISTAS-----GLPKPLTGRRNKAALD 226
           PD ENG TSSIWS          QAI+TAS     GLPKPLTGRRNKAALD
Sbjct: 333 PDQENGITSSIWS----------QAITTASRPIFDGLPKPLTGRRNKAALD 372

[Close]
BLAST of Carg07346 vs. TrEMBL
Match: tr|A0A0A0LCX1|A0A0A0LCX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653440 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 174/233 (74.68%), Postives = 188/233 (80.69%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLD-LLMPHHRKSRS 60
           MSSLQGYYGLKPSDQRSR +G + AVY +GASH  ED+ V GTSQ LD LL  HHRKS+S
Sbjct: 152 MSSLQGYYGLKPSDQRSRTDGLEMAVYMKGASHYLEDVPVYGTSQHLDFLLTHHHRKSKS 211

Query: 61  SVNGFLGEKVEVA-DLQSAEAGGDGDPKWNDKLVRRRQKSVADFSHSPEMLLKDDN-SSG 120
            VNG LGEK EV+ D+QS EA GDGD K +DKL+RRRQKSVADFS+SPEMLLKD+N SSG
Sbjct: 212 LVNGCLGEKGEVSDDVQSIEA-GDGDNKLSDKLIRRRQKSVADFSNSPEMLLKDENSSSG 271

Query: 121 SNGFSSSAGKGLLAQRPKTSSRTNLATDNAVGLIPIPIGLGDSYVAVDGFAGVRKSLSTS 180
           SNGFSSSAGKGLLAQRPK+SSR NLA DN VGLIPIPIGLGDS+V+ DGFA  RKS STS
Sbjct: 272 SNGFSSSAGKGLLAQRPKSSSRANLANDNEVGLIPIPIGLGDSFVSADGFAAFRKSSSTS 331

Query: 181 SLPDPENGNTSSIWSASKWSLKPDLQAISTAS-----GLPKPLTGRRNKAALD 226
           SLPD ENG TSSIWS          QAISTAS     GLPKPLTGRRNKAALD
Sbjct: 332 SLPDQENGITSSIWS----------QAISTASRPIFDGLPKPLTGRRNKAALD 373

[Close]
BLAST of Carg07346 vs. TrEMBL
Match: tr|A0A068URF6|A0A068URF6_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032994001 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.2e-53
Identity = 132/236 (55.93%), Postives = 162/236 (68.64%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKP++++S   GF+ AVY +G +H  ED   +  S +L+  + HHRKS+S 
Sbjct: 161 MSSLQGYYGLKPAEEKSASEGFEMAVYRKGGAHYLEDGPFARPSSNLNPPLSHHRKSKSE 220

Query: 61  VNGFLGEKVEVADLQSAEAGGDGD-PKWNDK-LVRRRQKSVADF-SHSPEMLLKDDNSSG 120
            NGF  E   + D  SA+   D D   W +K LVRRRQKS ADF S +PE LLK+DNS G
Sbjct: 221 ANGFATENGHLDDHLSAQESTDSDSDNWIEKLLVRRRQKSEADFSSRTPEKLLKEDNSGG 280

Query: 121 SNGFSSSAGKGLLAQRPKTSSRTNLATDNAVGL-IPIPIGLGDSYVAVDGFAGVRKSLST 180
           S GFS+  GKG LA RPK++SRT    +   GL  PIPIGLG+S+V +D  + VRKS ST
Sbjct: 281 S-GFSAITGKG-LALRPKSTSRTLPGAEAEAGLPNPIPIGLGESFV-IDSLSSVRKSSST 340

Query: 181 SSLPDPENGNTSSIWSASKWSLKPDLQAISTA-------SGLPKPLTGRRNKAALD 226
           SSL D ENG  SS+W  +KWSLKPDLQA+S+A        GLPKP+TGRRNKAALD
Sbjct: 341 SSLQDSENGTLSSLWPTTKWSLKPDLQALSSAVITRPIFDGLPKPITGRRNKAALD 393

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BLAST of Carg07346 vs. TrEMBL
Match: tr|A0A1R3GPZ8|A0A1R3GPZ8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24381 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.0e-51
Identity = 131/236 (55.51%), Postives = 158/236 (66.95%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKP++Q++   GF+ AVY +G +H  ED      S      +  HRKSRS 
Sbjct: 153 MSSLQGYYGLKPTEQKTMSEGFEMAVYRKGEAHYLEDGPFLKPSPSSGRPLQLHRKSRSL 212

Query: 61  VNGFLGEKVE-VADLQSAEAGGDGDP-KWNDKLVRRRQKSVADF-SHSPEMLLKDDNSSG 120
            NGF  E  E VAD+ SA    DG+P K NDKL+RRRQKS ADF + +PE LLK+DN+SG
Sbjct: 213 ANGFFDENGEAVADIMSAVEAKDGEPDKSNDKLIRRRQKSEADFTARTPERLLKEDNTSG 272

Query: 121 SNGFSSSAGKGLLAQRPKTSSRTNLATD-NAVGLIPIPIGLGDSYVAVDGFAGVRKSLST 180
             GFS+  GKG LA R K +SR N   D   V +   P GLGD YV +DGF+ VRKS ST
Sbjct: 273 -GGFSTITGKG-LALRSKAASRVNSGADTEVVAINATPTGLGDDYV-IDGFSVVRKSSST 332

Query: 181 SSLPDPENGNTSSIWSASKWSLKPDLQAISTAS-------GLPKPLTGRRNKAALD 226
           SSL D ENG+ SS+W ASKWSLKPDLQA S  +       GLPKP++GR++KAALD
Sbjct: 333 SSLQDQENGSLSSLWPASKWSLKPDLQAFSNVAITRPIFDGLPKPMSGRKSKAALD 385

[Close]
BLAST of Carg07346 vs. TrEMBL
Match: tr|A0A1R3J4L3|A0A1R3J4L3_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19601 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.4e-51
Identity = 130/236 (55.08%), Postives = 158/236 (66.95%), Query Frame = 0 

Query: 1   MSSLQGYYGLKPSDQRSRINGFDTAVYSEGASHDSEDMLVSGTSQDLDLLMPHHRKSRSS 60
           MSSLQGYYGLKP++Q++   GF+ AVY +G +H  ED      S      +  HRKSRS 
Sbjct: 154 MSSLQGYYGLKPTEQKTMSEGFEMAVYRKGEAHYLEDGPFLNPSPSSGRPLQLHRKSRSL 213

Query: 61  VNGFLGEKVE-VADLQSAEAGGDGDP-KWNDKLVRRRQKSVADF-SHSPEMLLKDDNSSG 120
            NGF  E  E VAD+ SA    DG+P K NDKL+RRRQKS ADF + +PE LLK++N+SG
Sbjct: 214 ANGFFDENGEVVADIMSAVEAKDGEPDKSNDKLIRRRQKSEADFTARTPERLLKEENTSG 273

Query: 121 SNGFSSSAGKGLLAQRPKTSSRTNLATD-NAVGLIPIPIGLGDSYVAVDGFAGVRKSLST 180
             GFS+  GKG LA R K +SR N   D   V +   P GLGD YV +DGF+ VRKS ST
Sbjct: 274 -GGFSTITGKG-LALRSKAASRVNSGADTEVVAINATPTGLGDDYV-IDGFSVVRKSSST 333

Query: 181 SSLPDPENGNTSSIWSASKWSLKPDLQAISTAS-------GLPKPLTGRRNKAALD 226
           SSL D ENG+ SS+W ASKWSLKPDLQA S  +       GLPKP++GR++KAALD
Sbjct: 334 SSLQDQENGSLSSLWPASKWSLKPDLQAFSNVAITRPIFDGLPKPMSGRKSKAALD 386

The following BLAST results are available for this feature:
BLAST of Carg07346 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948795.16.9e-12099.56uncharacterized protein LOC111452356 [Cucurbita moschata][more]
XP_023524813.16.0e-11696.09uncharacterized protein LOC111788632 [Cucurbita pepo subsp. pepo][more]
XP_022998455.16.9e-11293.04uncharacterized protein LOC111493082 [Cucurbita maxima][more]
XP_022153133.15.9e-8778.45uncharacterized protein LOC111020702 [Momordica charantia][more]
XP_022934623.11.1e-8276.29uncharacterized protein LOC111441757 [Cucurbita moschata][more]
BLAST of Carg07346 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23130.13.8e-4048.72Peptidoglycan-binding LysM domain-containing protein[more]
AT5G08200.11.2e-3846.86peptidoglycan-binding LysM domain-containing protein[more]
BLAST of Carg07346 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07346 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CG46|A0A1S3CG46_CUCME7.3e-7872.73uncharacterized protein LOC103500354 OS=Cucumis melo OX=3656 GN=LOC103500354 PE=... [more]
tr|A0A0A0LCX1|A0A0A0LCX1_CUCSA1.3e-7774.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653440 PE=4 SV=1[more]
tr|A0A068URF6|A0A068URF6_COFCA8.2e-5355.93Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032994001 PE=4 ... [more]
tr|A0A1R3GPZ8|A0A1R3GPZ8_COCAP2.0e-5155.51Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24381 PE=4 ... [more]
tr|A0A1R3J4L3|A0A1R3J4L3_9ROSI3.4e-5155.08Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19601 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07346-RACarg07346-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..138
NoneNo IPR availablePANTHERPTHR20932:SF29PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEINcoord: 1..225
NoneNo IPR availablePANTHERPTHR20932LOC443603 PROTEIN-RELATEDcoord: 1..225

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07346Cla017310Watermelon (97103) v1carwmB0759
Carg07346Cla015199Watermelon (97103) v1carwmB0757
Carg07346Csa3G653440Cucumber (Chinese Long) v2carcuB0777
Carg07346Csa7G420740Cucumber (Chinese Long) v2carcuB0783
Carg07346MELO3C024023Melon (DHL92) v3.5.1carmeB0755
Carg07346MELO3C023595Melon (DHL92) v3.5.1carmeB0753
Carg07346ClCG10G011950Watermelon (Charleston Gray)carwcgB0738
Carg07346ClCG09G004530Watermelon (Charleston Gray)carwcgB0735
Carg07346CSPI03G29030Wild cucumber (PI 183967)carcpiB0795
Carg07346CSPI07G18780Wild cucumber (PI 183967)carcpiB0801
Carg07346Cucsa.192300Cucumber (Gy14) v1carcgyB0860
Carg07346Cucsa.128300Cucumber (Gy14) v1carcgyB0857
Carg07346CmaCh14G009700Cucurbita maxima (Rimu)carcmaB1057
Carg07346CmaCh17G009890Cucurbita maxima (Rimu)carcmaB1058
Carg07346CmaCh01G002530Cucurbita maxima (Rimu)carcmaB1059
Carg07346CmoCh17G009600Cucurbita moschata (Rifu)carcmoB1032
Carg07346CmoCh14G009930Cucurbita moschata (Rifu)carcmoB1031
Carg07346CmoCh01G002640Cucurbita moschata (Rifu)carcmoB1033
Carg07346Lsi03G011660Bottle gourd (USVL1VR-Ls)carlsiB699
Carg07346Cp4.1LG02g15900Cucurbita pepo (Zucchini)carcpeB1072
Carg07346Cp4.1LG12g06370Cucurbita pepo (Zucchini)carcpeB1070
Carg07346CsGy3G026900Cucumber (Gy14) v2carcgybB0754
Carg07346MELO3C023595.2Melon (DHL92) v3.6.1carmedB0768
Carg07346MELO3C024023.2Melon (DHL92) v3.6.1carmedB0770
Carg07346CsaV3_3G031410Cucumber (Chinese Long) v3carcucB0798
Carg07346CsaV3_7G030610Cucumber (Chinese Long) v3carcucB0804
Carg07346Cla97C10G194770Watermelon (97103) v2carwmbB0794
Carg07346Cla97C09G166880Watermelon (97103) v2carwmbB0796
Carg07346Bhi11G001133Wax gourdcarwgoB0894
Carg07346Bhi09G000605Wax gourdcarwgoB0897
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07346Carg07080Silver-seed gourdcarcarB132
Carg07346Carg11193Silver-seed gourdcarcarB605
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07346Silver-seed gourdcarcarB453
Carg07346Cucumber (Gy14) v2carcgybB0756
Carg07346Cucumber (Gy14) v2carcgybB0760
Carg07346Cucumber (Gy14) v1carcgyB0861
Carg07346Cucurbita maxima (Rimu)carcmaB1060
Carg07346Cucurbita moschata (Rifu)carcmoB1034
Carg07346Cucurbita pepo (Zucchini)carcpeB1071
Carg07346Cucurbita pepo (Zucchini)carcpeB1073
Carg07346Wild cucumber (PI 183967)carcpiB0797
Carg07346Cucumber (Chinese Long) v2carcuB0779
Carg07346Cucumber (Chinese Long) v3carcucB0800
Carg07346Bottle gourd (USVL1VR-Ls)carlsiB697