Carg07334 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07334
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L1
Location	Cucurbita_argyrosperma_scaffold_019 : 185586 .. 189000 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAGCAATCCAAACAAATGTGTTGTGACCATTTCCACTTCTTATCATCTCCACATTCCATGGATAGAGAGACCCATTTCCAAATCCAAATCAAAATCCGAAGCCTCTGCATGAGGTAGAAGAAGAATCTCCCAGCTTCACTCTCCATCAATGGCGGCCTGCACTTCCACATCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTTGCTTCCTCCATCGTCTCTTTCAATGGGAAATCCAGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTATTATGTAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGACGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCGGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCAAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGGTATGTTTCAAAATCTTGTAAAACTTTGGTTGTTACGATTGGACTGTGGATTGTGTTGTGTTTTTTGGGTTGTTCTTGTAGGGGGCTTGTTTTCGAGCTTAGAAATGGAGGTTGTTTTACAATGGTTGTGGAGGATTTCTGAGTGTTTTGATTGGTAGATAGGATGTCAAATGTGAAGTAGTTTACATATTTTGTTGTCTTTCCATGTCTGAAATCAACTTGTTGTGTGATATGTCAGAGGAGATCCAAGAGGTTCTTGGAGATTCAAAAATTAAGGGAAAATAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTATAAATCTTGATCTCTTTATTGCTAAGGGAAGTTATGAAGAATATGCTTATCATGAGGTTATTTCGTTGTAGGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTAGATACTTTTAATACTTAAGCAGCCCTCTCTTTAATCGATAGACAGTCGGCTATAGTAGCGTTTCTTATTCTATATGTTCGAAATTTCTATCGAAATCCACCCTGTTGAGTCTTTGCTTGTGGCTAAGGCTTTGTTTGAGAGTTGTTGGTGAAACAGTTTTATGATTTTTAGAACGAAGTAAGCCTAAACATGTTCCAATAACTCTTCCAGAGTTATTTCTTTCTTTACGTTGATGACTTGAAGTTTTTATGCATCTTGATTCCTTTTTCTTGAGTTGAGTGGTCACGTGAGATCCCATATCGTTTGGGGAGGGGAACGAAACATGGCTTATAAGAGTGTAGAAACCTCTCCTTAGTAGACGCGTTTTAAAAACCTTGAGGGAAAGCTCGGAAGGGAAAGTCCAAATAGGACAATATCTACTAGTGGTGGGTTTATGCAGTTACAAATGATATCAGAGCCAGACATGGGCGGTTTGCCAGTGAGGACACTGGGCCCCAAGGGGGTGGATCGTGAGATCCCACGTCGGTTGGAGAAGGGAACGAAACATTGCTTATAAGGGTGTGGGAACCTCTCCCTAGCAGACGCGTTTTAAAACTTTGAGGGGAAGTCCGGAAGGGAAAGTCAAAAGAGAACAATATCTGCTAGCGGGGGGCTTGGACTGTTACAGGTTACTTGTTACAAAATATTTACTGTTTAGTGTGCAATTGTAAAGAGTTGAATTGAATATACAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTGATAGAACAGATTAAAGGAGGATTTATGGAGTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTATTGCTATTGCTATTGCTCTAACTAGATTGCTTCAATAATGATCCTAGAGACATGAATACAAACTTAACGTAGTAGCTACCCGGGGTTTATAGATCGATTTTTGGTCACCGATATATTTCCAGAATTTTGTATATCAAAGTTATCTTCTAATGACTGAAGCCAAAACTCTAAACCATTTTCTAAAACAGATATAGTCTATATATGCAAGGGCATTACCATCGGCGAATGCCGATACCTGCATTACTATATGATGATGTAGTTGATTTTCATAGTTGAGTCTCCTCCGCTCGTTTCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGTACCGTAGCAACCAATCTGCCTCAGGTATCAATGATTTTTGTTTGGTATCTGCAGTGCATCCAGATTTCCTATCTATCCATTAGAAAAGAAATTCAAGACTTTACTTAATGCATCTAGCAACCATGATTTCAGGCAATTGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACTTACCATTTGGGAAAGCCGACTTCAGCGAAGAAGACCTTCTCGTAAACTTGCTCGCAGCCATAGTATGTTCTTCCCTTCTTATCTCCATAGCTGTTGGTCTCCAAAAATGTGTCTAATTCATGTCATTTTCTTTAAACTCTCGACAGAAATCAGTAGAAACCAATAAACCGACAGGTGCGAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGGTTAAATATAAGGGAGATGCTCGACTTCAAGCTTCCCTCGACAGCTTGACAAATAACAAACCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTATGGGGGATCCACTACAATATAATGATGCCCAAATGTGAGCTGCACTGGAATGAAGATGATTGAAGAAACTGGGATGAATAATGAGAAGATATCAGAAAATTATGATCACAGAAACAAGCATACTGCATAGTCTTCTATACTGACTGAATCTCTCTGTATTAATGGTGTTAAGTTCTTATTGATCTTTGATTAACCTCTTGGGTTTTAGGGAAAAAAATGATGAATGTACTGAAATGTAATGACCAGTTGATGACCTTTTATTCTGTTCCTGTTTAGGGATATTCGTCCTTTTTATGAAAACGTGGAATCATTGCTCCTTCTAAGCAATCGTATTCTCAAACTTCTCATTGTGTTATCTCTGGTTTCGAGCATATGCATCTGAAATATTACTTTGAGCAATTGAACTCTAAATGAATCATCTCATTGTTGAAAGCCCAAGGATGATTCAAGAAGACGGACATATTTATAAATATTTTCGAGAATTGCATTAGGCAAACTACGATGGCCTGGTAGTTAATAAGGAACGTTTACAAGCAGACATAGTCGTCTTTGGACTTTTTTTTCCGAGCTTTTCC

mRNA sequence

TGTAGCAATCCAAACAAATGTGTTGTGACCATTTCCACTTCTTATCATCTCCACATTCCATGGATAGAGAGACCCATTTCCAAATCCAAATCAAAATCCGAAGCCTCTGCATGAGGTAGAAGAAGAATCTCCCAGCTTCACTCTCCATCAATGGCGGCCTGCACTTCCACATCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTTGCTTCCTCCATCGTCTCTTTCAATGGGAAATCCAGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTATTATGTAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGACGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCGGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCAAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGAGGAGATCCAAGAGGTTCTTGGAGATTCAAAAATTAAGGGAAAATAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTGATAGAACAGATTAAAGGAGGATTTATGGAGTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGTACCGTAGCAACCAATCTGCCTCAGGCAATTGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACTTACCATTTGGGAAAGCCGACTTCAGCGAAGAAGACCTTCTCGTAAACTTGCTCGCAGCCATAAAATCAGTAGAAACCAATAAACCGACAGGTGCGAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGGTTAAATATAAGGGAGATGCTCGACTTCAAGCTTCCCTCGACAGCTTGACAAATAACAAACCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTATGGGGGATCCACTACAATATAATGATGCCCAAATGTGAGCTGCACTGGAATGAAGATGATTGAAGAAACTGGGATGAATAATGAGAAGATATCAGAAAATTATGATCACAGAAACAAGCATACTGCATAGTCTTCTATACTGACTGAATCTCTCTGTATTAATGGTGTTAAGTTCTTATTGATCTTTGATTAACCTCTTGGGTTTTAGGGAAAAAAATGATGAATGTACTGAAATGTAATGACCAGTTGATGACCTTTTATTCTGTTCCTGTTTAGGGATATTCGTCCTTTTTATGAAAACGTGGAATCATTGCTCCTTCTAAGCAATCGTATTCTCAAACTTCTCATTGTGTTATCTCTGGTTTCGAGCATATGCATCTGAAATATTACTTTGAGCAATTGAACTCTAAATGAATCATCTCATTGTTGAAAGCCCAAGGATGATTCAAGAAGACGGACATATTTATAAATATTTTCGAGAATTGCATTAGGCAAACTACGATGGCCTGGTAGTTAATAAGGAACGTTTACAAGCAGACATAGTCGTCTTTGGACTTTTTTTTCCGAGCTTTTCC

Coding sequence (CDS)

ATGGCGGCCTGCACTTCCACATCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTTGCTTCCTCCATCGTCTCTTTCAATGGGAAATCCAGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTATTATGTAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGACGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCGGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCAAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGAGGAGATCCAAGAGGTTCTTGGAGATTCAAAAATTAAGGGAAAATAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTGATAGAACAGATTAAAGGAGGATTTATGGAGTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGTACCGTAGCAACCAATCTGCCTCAGGCAATTGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACTTACCATTTGGGAAAGCCGACTTCAGCGAAGAAGACCTTCTCGTAAACTTGCTCGCAGCCATAAAATCAGTAGAAACCAATAAACCGACAGGTGCGAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGGTTAAATATAAGGGAGATGCTCGACTTCAAGCTTCCCTCGACAGCTTGA

Protein sequence

MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADWICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA

Homology

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BLAST of Carg07334 vs. NCBI nr
Match: XP_023525415.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 589.3 bits (1518), Expect = 8.5e-165
Identity = 310/357 (86.83%), Postives = 310/357 (86.83%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCH LCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ICLNFQRRARHHVIVAA                                           
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEADTEAEEGVAVGGTDAVAAPKPKKGKAALPLKRD 120

Query: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
              SKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

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BLAST of Carg07334 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 586.6 bits (1511), Expect = 5.5e-164
Identity = 354/357 (99.16%), Postives = 355/357 (99.44%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCH LCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

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BLAST of Carg07334 vs. NCBI nr
Match: XP_022998464.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 585.1 bits (1507), Expect = 1.6e-163
Identity = 354/357 (99.16%), Postives = 355/357 (99.44%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCH LCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

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BLAST of Carg07334 vs. NCBI nr
Match: XP_022152718.1 (LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 550.8 bits (1418), Expect = 3.4e-153
Identity = 300/360 (83.33%), Postives = 310/360 (86.11%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MA CTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIK+FSS H LCRPRRS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  ICLNFQRRARHHVIV---AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           I L+FQRRARHHVIV   AA XXXXXXXX                               
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDGAAATVAAPKPKKGKAALPL 120

Query: 121 XXXXXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180
                 SKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 240
           LRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASP
Sbjct: 181 LRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300

Query: 301 DFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           DFSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 DFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360

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BLAST of Carg07334 vs. NCBI nr
Match: XP_004149726.1 (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] >KGN58572.1 hypothetical protein Csa_3G687730 [Cucumis sativus])

HSP 1 Score: 523.5 bits (1347), Expect = 5.7e-145
Identity = 321/358 (89.66%), Postives = 341/358 (95.25%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVY-PQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSAD 60
           MAACTST PSSLMLT ASSSV+ PQDLASS+VSF  K + STIKSFSS + LCR RRS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVHPPQDLASSLVSFKAKLQISTIKSFSSSNFLCRSRRSPD 60

Query: 61  WICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           W+ LNFQRRAR HVIVAA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  WVFLNFQRRARQHVIVAA--FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           XXXXSKRFLEIQKLRENKKEY++ TAISLLKEM+STKF+E+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 XXXXSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFIESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYW+SAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

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BLAST of Carg07334 vs. TAIR10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 396.0 bits (1016), Expect = 2.5e-110
Identity = 221/355 (62.25%), Postives = 250/355 (70.42%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDL  +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            C    R + H  IV+A                                           
Sbjct: 61  RCAAIDRASNHKFIVSA-----VAAEADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
              SKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS 356
           EEDLL+N LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P+
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344

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BLAST of Carg07334 vs. TAIR10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-39
Identity = 88/224 (39.29%), Postives = 137/224 (61.16%), Query Frame = 0


Query: 132 KLRENKKE-YEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 191
           +L+  KK  +++  AI  +K  A  KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 192 TVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKL 251
            V+VA   +G   ++AK AGAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 252 LGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLL 311
           L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 312 AAIKSVETNKPTGAKGV-----YWKSAHICSSMGPSIRLNIREM 349
           A + ++   KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

[Close]

BLAST of Carg07334 vs. Swiss-Prot
Match: sp|Q9LY66|RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 4.5e-109
Identity = 221/355 (62.25%), Postives = 250/355 (70.42%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDL  +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            C    R + H  IV+A                                           
Sbjct: 61  RCAAIDRASNHKFIVSA-----VAAEADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
              SKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS 356
           EEDLL+N LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P+
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344

[Close]

BLAST of Carg07334 vs. Swiss-Prot
Match: sp|Q9LE95|RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.2e-106
Identity = 189/234 (80.77%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 124 SKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVN 183
           SKRFLEIQKLRE K+EY++KTA+SL+K+M+STKFVETAEAHFRLNIDPKYNDQQLRATV+
Sbjct: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178

Query: 184 LPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 243
           LPKGTG+TV++AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM KV
Sbjct: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238

Query: 244 ASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEED 303
           ASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F EED
Sbjct: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298

Query: 304 LLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           LL+NL A IKSVETNKPTGAKGVYWKSAHI SSMGPSIRLNIREMLD+K PS A
Sbjct: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of Carg07334 vs. Swiss-Prot
Match: sp|B0JNQ5|RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.4e-78
Identity = 148/230 (64.35%), Postives = 184/230 (80.00%), Query Frame = 0


Query: 124 SKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVN 183
           S+R  + Q   EN K YE   A++LLKE+A+ KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 184 LPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 243
           LPKGTG+TVRVAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 244 ASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEED 303
           A LG+ LGPRGLMP+PK GTV T+L  AIAEFK GK+E+RAD+TGIVH+ FGKA FS ED
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 304 LLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL 354
           LLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D KL
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of Carg07334 vs. Swiss-Prot
Match: sp|Q3MA18|RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.6e-76
Identity = 142/234 (60.68%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 124 SKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVN 183
           S+R  E+Q   E+ +EY    A+SLLKE A+ KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 184 LPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 243
           LPKGTGQ VRVAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 244 ASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEED 303
           A LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS ED
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 304 LLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL   A
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Carg07334 vs. Swiss-Prot
Match: sp|Q8YLJ7|RL1_NOSS1 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-75
Identity = 142/234 (60.68%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 124 SKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVN 183
           S+R  E+Q   E+ +EY    A+ LLKE A+ KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 184 LPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 243
           LPKGTGQ VRVAV+ +GEK  EA NAGAD+VG E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 244 ASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEED 303
           A LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS ED
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 304 LLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL   A
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Carg07334 vs. TrEMBL
Match: tr|A0A0A0LD08|A0A0A0LD08_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_3G687730 PE=3 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 3.8e-145
Identity = 321/358 (89.66%), Postives = 341/358 (95.25%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVY-PQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSAD 60
           MAACTST PSSLMLT ASSSV+ PQDLASS+VSF  K + STIKSFSS + LCR RRS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVHPPQDLASSLVSFKAKLQISTIKSFSSSNFLCRSRRSPD 60

Query: 61  WICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           W+ LNFQRRAR HVIVAA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  WVFLNFQRRARQHVIVAA--FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           XXXXSKRFLEIQKLRENKKEY++ TAISLLKEM+STKF+E+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 XXXXSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFIESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYW+SAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Carg07334 vs. TrEMBL
Match: tr|A0A1S3CFH3|A0A1S3CFH3_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 1.9e-136
Identity = 304/332 (91.57%), Postives = 320/332 (96.39%), Query Frame = 0


Query: 26  LASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADWICLNFQRRARHHVIVAAXXXXXXXX 85
           LASSIVSF GK +  TIKSFSS + LCR RRSADW+ LNFQRRAR HVIVA  XXXXXXX
Sbjct: 27  LASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSADWVFLNFQRRARQHVIVA--XXXXXXX 86

Query: 86  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFLEIQKLRENKKEYEIKTA 145
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFLEIQKLRENKKEY++ TA
Sbjct: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFLEIQKLRENKKEYDLTTA 146

Query: 146 ISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVRVAVLTQGEKFDE 205
           ISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV+VAVLTQGE+FDE
Sbjct: 147 ISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGERFDE 206

Query: 206 AKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVA 265
           AKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVA
Sbjct: 207 AKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVA 266

Query: 266 TNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAIKSVETNKPTGAKG 325
           TNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLL+NLLAAIKS+ETNKP+GAKG
Sbjct: 267 TNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKG 326

Query: 326 VYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           VYWKSAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 327 VYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Carg07334 vs. TrEMBL
Match: tr|A0A2I4ECS2|A0A2I4ECS2_9ROSI (Ribosomal protein OS=Juglans regia OX=51240 GN=LOC108988389 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.0e-126
Identity = 268/361 (74.24%), Postives = 287/361 (79.50%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60
           MA C  T+PSSLMLTYA+SSV+ QDL  S++SF  K   ST  S     L  R RR   W
Sbjct: 1   MATC--TAPSSLMLTYAASSVHHQDLIPSLLSFKPKP-LSTTFSLYPLVLKPRERRPNRW 60

Query: 61  ICLNFQRRARH------HVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
             +NF RR +        V+VAA    XXXXXXXXXXXXXX                   
Sbjct: 61  ANVNFHRRDQSGGSYHTRVVVAALAAEXXXXXXXXXXXXXXGAAESGTVSVPKPKKGKAA 120

Query: 121 XXXXXXXXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYN 180
                    SKRFLEIQKLRENKKEY++ +AISL+KEMASTKFVET EAHFRLNIDPKYN
Sbjct: 121 LLLKRDRRRSKRFLEIQKLRENKKEYDLNSAISLIKEMASTKFVETVEAHFRLNIDPKYN 180

Query: 181 DQQLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 240
           DQQLRATVNLPKGTGQTV+VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 240

Query: 241 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPF 300
           ASPDMMPKVASLGK+LGPRGLMPNPKAGTV  N+PQAIAEFKQGKVEYRADKTGIVHLPF
Sbjct: 241 ASPDMMPKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLPF 300

Query: 301 GKADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLP 356
           GKADFSEEDLL+NLLAAIKSVE NKP GAKGVYWKSAHICSSMGPSIRL+IREML++KLP
Sbjct: 301 GKADFSEEDLLINLLAAIKSVEANKPPGAKGVYWKSAHICSSMGPSIRLHIREMLEYKLP 358

[Close]

BLAST of Carg07334 vs. TrEMBL
Match: tr|M5X1N4|M5X1N4_PRUPE (Ribosomal protein OS=Prunus persica OX=3760 GN=PRUPE_2G022100 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 3.3e-125
Identity = 259/355 (72.96%), Postives = 283/355 (79.72%), Query Frame = 0


Query: 5   TSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRP--RRSADWIC 64
           TST+PSSLMLTYASSSV+PQD   S+VSF  K  F   K+F  C L  RP  RR + W+ 
Sbjct: 3   TSTTPSSLMLTYASSSVHPQDFTPSLVSFKPKPLF---KTFCLCPLGLRPRERRPSKWVN 62

Query: 65  LNFQRRARH--HVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           L+  + A+   + + AA                         XXXXXXXXXXX       
Sbjct: 63  LSLLKEAKSEPYPVAAAALTAEAEVAEDVAEDEEVKGDSSVTXXXXXXXXXXXALLLKRD 122

Query: 125 XXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 184
              SKRFLEIQKLRE KKEYE++ AI+LLKEM +TKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 123 RTRSKRFLEIQKLRETKKEYELQPAIALLKEMTNTKFVETAEAHFRLNIDPKYNDQQLRA 182

Query: 185 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 244
           TVNLPKGTGQTV+VAVLTQGE+FDEAK+AGADLVGG+DLI+QIK GFMEFDKLIASPDMM
Sbjct: 183 TVNLPKGTGQTVKVAVLTQGERFDEAKSAGADLVGGDDLIQQIKEGFMEFDKLIASPDMM 242

Query: 245 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 304
           PKVASLGK+LGPRGLMPNPKAGTV  N+PQAIAEFKQGKVEYRADKTGIVHL FGKADF 
Sbjct: 243 PKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLRFGKADFP 302

Query: 305 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS 356
           EEDLLVNLLAA+KSVETNKP GAKGVYWKSAHICSSMGPSIRLNIREMLDFKLP+
Sbjct: 303 EEDLLVNLLAAVKSVETNKPPGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPT 354

[Close]

BLAST of Carg07334 vs. TrEMBL
Match: tr|A0A0A0K886|A0A0A0K886_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 7.4e-125
Identity = 250/359 (69.64%), Postives = 273/359 (76.04%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPR---RS 60
           MA C  T  SSL + + +SSV+PQD  SS++SF   +  ST   FS CH L   R   RS
Sbjct: 3   MATCNPTLHSSLTMAH-TSSVHPQD-PSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 62

Query: 61  ADWICLNFQRRARHHVIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            +W+ L F R  R H++VAA                                        
Sbjct: 63  INWVDLKFGRECRDHLVVAA-LAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPL 122

Query: 121 XXXXXXSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180
                 SKRFLEIQKLRE K EY++KTAISLLK+ +STKFVETAEAHFRLNIDPKYNDQQ
Sbjct: 123 KRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQ 182

Query: 181 LRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 240
           LRATVNLPKGTGQTV+VAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASP
Sbjct: 183 LRATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASP 242

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTV TN+PQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 302

Query: 301 DFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPST 357
           DFSE+DLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLN REMLD+K+PS+
Sbjct: 303 DFSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSS 358

The following BLAST results are available for this feature:

BLAST of Carg07334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525415.1	8.5e-165	86.83	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022948661.1	5.5e-164	99.16	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998464.1	1.6e-163	99.16	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022152718.1	3.4e-153	83.33	LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica cha...	[more]
XP_004149726.1	5.7e-145	89.66	PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] >KGN58...	[more]

BLAST of Carg07334 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63490.1	2.5e-110	62.25	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	2.3e-39	39.29	Ribosomal protein L1p/L10e family	[more]

BLAST of Carg07334 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LY66\|RK1_ARATH	4.5e-109	62.25	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
sp\|Q9LE95\|RK1_SPIOL	1.2e-106	80.77	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
sp\|B0JNQ5\|RL1_MICAN	2.4e-78	64.35	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
sp\|Q3MA18\|RL1_ANAVT	8.6e-76	60.68	50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) O...	[more]
sp\|Q8YLJ7\|RL1_NOSS1	1.9e-75	60.68	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of Carg07334 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LD08\|A0A0A0LD08_CUCSA	3.8e-145	89.66	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_3G687730 PE=3 SV=1	[more]
tr\|A0A1S3CFH3\|A0A1S3CFH3_CUCME	1.9e-136	91.57	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1	[more]
tr\|A0A2I4ECS2\|A0A2I4ECS2_9ROSI	3.0e-126	74.24	Ribosomal protein OS=Juglans regia OX=51240 GN=LOC108988389 PE=3 SV=1	[more]
tr\|M5X1N4\|M5X1N4_PRUPE	3.3e-125	72.96	Ribosomal protein OS=Prunus persica OX=3760 GN=PRUPE_2G022100 PE=3 SV=1	[more]
tr\|A0A0A0K886\|A0A0A0K886_CUCSA	7.4e-125	69.64	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR023674	Ribosomal_L1-like
IPR023673	Ribosomal_L1_CS
IPR016095	Ribosomal_L1_3-a/b-sand
IPR005878	Ribosom_L1_bac-type
IPR028364	Ribosomal_L1/biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07334-RA	Carg07334-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 149..339 e-value: 2.0E-48 score: 164.8
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 142..343 e-value: 1.1389E-72 score: 226.297
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 123..347 e-value: 1.2E-94 score: 313.9
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 121..348 score: 39.527
None	No IPR available	GENE3D	G3DSA:3.30.190.20		coord: 279..343 e-value: 1.3E-79 score: 268.4 coord: 140..186 e-value: 1.3E-79 score: 268.4
None	No IPR available	PANTHER	PTHR23105:SF54	39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL	coord: 100..348
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 100..348
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 187..278 e-value: 1.3E-79 score: 268.4
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 240..258
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	SSF56808	Ribosomal protein L1	coord: 126..345

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07334	Cla015213	Watermelon (97103) v1	carwmB0757
Carg07334	Cla017286	Watermelon (97103) v1	carwmB0759
Carg07334	Csa7G420870	Cucumber (Chinese Long) v2	carcuB0783
Carg07334	Csa3G687730	Cucumber (Chinese Long) v2	carcuB0779
Carg07334	MELO3C023997	Melon (DHL92) v3.5.1	carmeB0755
Carg07334	MELO3C023582	Melon (DHL92) v3.5.1	carmeB0753
Carg07334	ClCG10G012180	Watermelon (Charleston Gray)	carwcgB0738
Carg07334	ClCG09G004400	Watermelon (Charleston Gray)	carwcgB0735
Carg07334	CSPI03G29510	Wild cucumber (PI 183967)	carcpiB0797
Carg07334	CSPI07G18910	Wild cucumber (PI 183967)	carcpiB0801
Carg07334	Cucsa.128170	Cucumber (Gy14) v1	carcgyB0857
Carg07334	Cucsa.248910	Cucumber (Gy14) v1	carcgyB0864
Carg07334	CmaCh14G009850	Cucurbita maxima (Rimu)	carcmaB1057
Carg07334	CmaCh17G009720	Cucurbita maxima (Rimu)	carcmaB1058
Carg07334	CmaCh08G005090	Cucurbita maxima (Rimu)	carcmaB1060
Carg07334	CmaCh01G002390	Cucurbita maxima (Rimu)	carcmaB1059
Carg07334	CmoCh08G005010	Cucurbita moschata (Rifu)	carcmoB1034
Carg07334	CmoCh01G002480	Cucurbita moschata (Rifu)	carcmoB1033
Carg07334	CmoCh17G009460	Cucurbita moschata (Rifu)	carcmoB1032
Carg07334	CmoCh14G010080	Cucurbita moschata (Rifu)	carcmoB1031
Carg07334	Lsi02G025450	Bottle gourd (USVL1VR-Ls)	carlsiB697
Carg07334	Lsi03G011910	Bottle gourd (USVL1VR-Ls)	carlsiB699
Carg07334	Cp4.1LG02g15740	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07334	Cp4.1LG17g07870	Cucurbita pepo (Zucchini)	carcpeB1071
Carg07334	Cp4.1LG12g06550	Cucurbita pepo (Zucchini)	carcpeB1070
Carg07334	Cp4.1LG03g04730	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07334	CsGy3G027350	Cucumber (Gy14) v2	carcgybB0756
Carg07334	CsGy7G017330	Cucumber (Gy14) v2	carcgybB0760
Carg07334	MELO3C023997.2	Melon (DHL92) v3.6.1	carmedB0770
Carg07334	MELO3C023582.2	Melon (DHL92) v3.6.1	carmedB0768
Carg07334	CsaV3_7G030740	Cucumber (Chinese Long) v3	carcucB0804
Carg07334	CsaV3_3G031960	Cucumber (Chinese Long) v3	carcucB0800
Carg07334	Cla97C10G195000	Watermelon (97103) v2	carwmbB0794
Carg07334	Cla97C09G166750	Watermelon (97103) v2	carwmbB0796
Carg07334	Bhi11G001161	Wax gourd	carwgoB0894
Carg07334	Bhi09G000586	Wax gourd	carwgoB0897

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07334	Carg13423	Silver-seed gourd	carcarB453
Carg07334	Carg11208	Silver-seed gourd	carcarB605

The following block(s) are covering this gene:

None