Carg07332 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07332
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_019 : 176739 .. 181416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGAAGATGGATGTAGAGCACAAGGAAGCTATCAGCAATGTCATGATCCTCACGGACCCCGAAGGCGCGCCTTTGGGAGCTCCCATTGATCTTCCCCAAAATGCAGGGCCTCAGCAGCTTCGGCAAATGGTCAATAAGCTTCTCAACAAGGTAAGTTTCGGCAAAAGCTACCTTTTACTGTTTCCTCTTCCCATGATGCTTGTCAACAATTAAGTCTGGGGGAAAAGTGATTTGTTAATTCTCGATCAATATGCAACTTTGACCGTTGATATAAAGTAGCTGTGTTCGTAAGAACTTTGATTATCGAGAGATATTTTTTTGGGAATGTTTTAAATTAGGTTGGCCGGTTATTCGCGGGAGAGTGAACACTCTCGTAGACTTGTGAGAGTTTCTTTTGTTGGTTGGCCTGCTTTGTTGCATTCTTGTAGAAGATGAAGGAGACATGGATCATATGTTGGGGAGTTGTGGTTTTGTGTGGTTTGTTTGAGATTATTTCTTTGGGTAGATTGGTTATTAGTGCGTCCGGCAAAGATTATGTAGGGAGATGATCAAGGAGTAAGGCAACGTTGGGAAGGAAAGAAAGGAGGTGTACAAATGGTTTTCTAGAAAGCAATCGAGCTTTCATTGAGAAAAATGAAAGAACTAAAGCATACAAGAAATAAGCCCAACAACAACAAAGAGTTCAAGAACTAACTATAGAAACGGACTTCAATTCAACAAAATCAAACTAAGATCGGGATTACAAAAGGTCTAGTAACCCAAGGCTCGCAAATGTGTTAAGATCGTACAACAATGCACACACTTAATCTAGATGAACATAAAGAACAGGAGACAGGAGAGAGAAATTTCAAAGTTGGAATATTGGCTAAAAATTTATATGGATGACTTCATACTACGTTAGGAGTATATATATGGTATGAGAATACACGGTTCAGTTTACTGTATATATAGTTTTACCAGATATAATTATCTACTTTATATAACTATCTACCTTTACCAGCTTTTTACTATACATAGCTATTTATTATGACAATATCATTTACCTTTGTTATGTATAACCCGTTAACTAAGCTATAAATAAGCCAAGCAGTATACTACATAACAAAATAACAAAAGGGATATACAAATGTTGAAGGTGGGCAAAGTGACATGCATTGAGAAGGCAATGCAATGTTCTTCATACTGAAGGGATACATGTGTAGTTTCCTATTTGATTAGATGAGCAAAAGTCTATATAACGTGAGTGCATATATGTATATACAGAAAGGCAGGTTCTTATGTAACTTAGAATAACAATATTACATCCATTGTAGTAAATCACTACATCACGTGATAAAGAACTTTGAAACAAGAAAATGAACACCCAAGGAGAAGGAAAGTTATAGTTTCTTTATTTCTACATTAATAATCTATTGTTCTTTTACGTCAAGATGGAGAAACCTTACCCACAACTTTATCAAGCAACTGGAAGTAAGCATTCGACCACGATCTTTTGGCTGCAAAAATGCAGAAAGGAACTAGAATCCCAGCTGCAAATCCAACCCCAAGACTCAGGTAAAACCATTGATCAATGACTTCATTGTTTTCTTCGTCTTCATCTTCATCTCTCCCTCCATCTGTACTTTTAGTGTCTTGACATGTTACAGAAAGGGGTTCTCCACAGAGACCAGGATTTCCAGCAAAAGATGAAGCGGGAAAGGTTTGAAACTGATATCCAACAGGAATCTTTCCTGTCAAGTTATTGTTCGAGAGATTCAAATCACTCAACCATATTAATTTAGTCAAGCTTGGAGGAATGGGACCTGAGAACCTGTTGTTTGAAAGATCAAGATATGATAATTCTATCAGGTTTGAAATGTTCTCTGGAATCTGGCCACTGATATGATTTTGAGACAAGTTCAAGACAATAAGCCCGGCTAACTCAGTTATATCTTGAGGTAAAACTCCATACAGTTCGTTCCCAGAGAGATCAATGCTTATTACAAGGGAAAGGGTCTTAGTGTACCTCAATAAGTTGCCTTTTGTGTTCAAGATGTAGTTTTCTTCGTAGTAAATGCTCCTGTACTTCCCGTAAATTAGATATTGGTTTGTCATCTGGCGTTGAAACATAGCTTTGAGACTGCTGAAACCAATTGAAATGGGACCATTCAACTTGTTTTGTGCCAGGTCCAAGACTTGCAACGAGCCAAGATTTGTGAGTGCAGGAATCGCTCCGGAAAATGCATTTGACCTTAAGGTGAGGATTCTCAGATTTGGAAAATTAGTTCCAATCCAAGGAGGAATACTACCGACAAGACCATTATTCCCAAGATTCAGAGTTTCCAGATTGGAGAGATTTTGGAAAGATGGTGGGAGCTTTCCAGTGAGCCTGTTTTCACTTAAATGTAGAGTCTGAAGCTGATTTAACTGACCCAAAGAGTCTGGAATTGGACCTACTAAATAGTTGTTCGCGAGGTCGATTGCCTTCAACAACGAACAATTCCCAATAGTTGAAGGAATTTTACCAGTCAAGTTATTCCCTGATAGATTAATGACCTGAAGAATCTGCATTTCCCCTACAGTATCTGGAATTTCACCTGTTATTTGATTATTAGCCAGAGACAGAAAGACCAGGTTCGGCATTGCCTCACCTATATTCTTTGGTATTGAACCCGAGAATATGTTATTTGAAAGTTTGAGTGAAACAATCTCAAAGCTTGGAAGAGGAATAGGTCCTTCAAAGAGATTGGAGCTGAAATCAACATCTGCAAAGGGAGCTATTTTCAGCGGGTTCGGTAGTCGTCCCTCTAACCGGTTGTAAGAAACGTTTAAAAGAGCTAGATTTGCTGAGAGTTTCCAAAACCAGTTGGGAATGGGACCTGAGATGCTGGCATTTGAGAAATCCATGAACAGCACCGCATTTTGTGATTTGAGCCAAACTGGAAATGGAGAACCCAAGTAACACGAACCCATGTCAAGATTTCTGACTTGGAATGGAGGAACCCAATTGGAACTAACGTTCAATCTCAAAGAATTCGAAGATAAATGTAAGATTTTCAGTTTGTTTAGCTTTGAAAAATGTGCTTCTGAGACTGTCCCTTTGAATTGATTGCTAGAAACATCTAAAAGAGACAGCTCAGAAAGCTGCCCTATACTCTCAGGGAGAGTCCCATTCAGCTTATTTCCTTGCAGCCCCAATGAAGACAACTTTTCAAGTGATCTGAAATCAACAATGGGACCTTGAAGTGAGTTATAACCCAAACTTAGTTCATTAAGATTTTCAAGTTGGCCTAACCACTCCGGCAATTCACCCACCAATTTGTTGTTGGACAGATCTAGATGCTCCAGGCTAAAGAGTGGACGAGCTGGATTGCAGTTTTCAGTTCCTTCAAGAAATTCAGGTAACGTTCCGTTCAAATTATTACCCGATAATCGGAAAAAGTTCAGGTTGCAAAGCCTTCCGATGGTGCTCGGAATCCCTCCTTGGACGTTATTCCCTAAAAGATCAAAATAAGCAAGAGAACTCACATTTCCAACGGAGGATGGAAGCTTTCCATGAATCTTATTCTCAGCTAGTATAAGAACTTCCACCCTACTCCATCCTCTTCGAAATAACTGAGAGCAGCTCGCCGAGAGATTTCCATTCCCAGAAAGATCCAACGAGCGTAAACTGGGTAGATCACCGAGGCCGAGGGGAATTCTACCGTACAAATTACAATCACTCATACTGATTGATGTCAGGCTACTAACATTCATAAGCCAACTGGGTATTTGAGAATTGATATTGTTTCCAGTTAAATCAACGACAGAGAGAGAAGTGAAGTTGACTGTCAAGGGAGATGAAATGGCACCGGATAAGCCACAATCACTCAAATGCAACTCAGTTAAGAATCTAAGCCTGCTCAATATCTTAAACCAGTCTGGTTTCACTGTGGAAAGATCCATGTTATCCATCGCAAGATACTTCAAGGACACAAGCCCAGCTACCCATTCAAGATTATCAAGAACTAAACCCAAATTCTCCATATCAAGATATTGCAAGCTAGAAATGTTACCCAAACTTGGAGGAAGTAAACCACCAAAGCCAGCATTTGATAGGTTCAAATACTGCAACTTCTTCAAAGAGCCAAAGAATTCAGGAACTGGAATATCATTGAATGTGTTAAAACTCAAATCCAAATATCTCAAGGACCTTAGTTTTGTGAGCGATGGACTTATCTCTCCACTTAGATTCCAGAATCCTTGCTCCCCTAAGGGATGAGGGTTATGAAGATCAATCACTGTAACAGCTCCAGTTCCATTGTCACACCCCACCCCTCTCCATTGGCAACAGTTCATCCCTTTCCACGACGCGAGTCGATTCTCAGGATCGTTGAGGCCACTTTTTAAGGCAATCAAAGCTTCTCGATCGGAATCAGAACACCCTAGAGACTTTACATGAACATTACAGAAAAGAACTAGAATAGCTAATTGAAGAACTGGGCTCGTCGACATTGACACAACTCTCTCTCTGTTGCGAGGCCGAAGGAGAAATCGAACGTGCTTCCCCATAAGGTAATTTTAATATGATCTCTTCTCTTTGCAACCAATTTGGCTAAGATTGTTCTTGATTATCAGAATTCCATTTGTGTTCTTTGTCTGTGATTTAATTCTTTAGGTAAAGTCAAATCTATGTATAAGTTTTAGAATATAG

mRNA sequence

ATGGCTACGAAGATGGATGTAGAGCACAAGGAAGCTATCAGCAATGTCATGATCCTCACGGACCCCGAAGGCGCGCCTTTGGGAGCTCCCATTGATCTTCCCCAAAATGCAGGGCCTCAGCAGCTTCGGCAAATGGTCAATAAGCTTCTCAACAAGATGGAGAAACCTTACCCACAACTTTATCAAGCAACTGGAAGTAAGCATTCGACCACGATCTTTTGGCTGCAAAAATGCAGAAAGGAACTAGAATCCCAGCTGCAAATCCAACCCCAAGACTCAGAAAGGGGTTCTCCACAGAGACCAGGATTTCCAGCAAAAGATGAAGCGGGAAAGCTTGGAGGAATGGGACCTGAGAACCTGTTGTTTGAAAGATCAAGATATGATAATTCTATCAGGTCCAAGACTTGCAACGAGCCAAGATTTGTGAGTGCAGGAATCGCTCCGGAAAATGCATTTGACCTTAAGATTTGGAAAATTAGTTCCAATCCAAGGAGGAATACTACCGACAAGACCATTATTCCCAAGATTCAGAGTTTCCAGATTGGAGAGATTTTGGAAAGATGGTGGGAGCTTTCCACCAGAGACAGAAAGACCAGGTTCGGCATTGCCTCACCTATATTCTTTGGTATTGAACCCGAGAATATGTTATTTGAAAGTTTGAGTGAAACAATCTCAAAGCTTGGAAGAGGAATAGGTCCTTCAAAGAGATTGGAGCTGAAATCAACATCTGCAAAGGGAGCTATTTTCAGCGGATCTAGATGCTCCAGGCTAAAGAGTGGACGAGCTGGATTGCAGTTTTCAGTTCCTTCAAGAAATTCAGTTAAATCAACGACAGAGAGAGAAGTGAAGTTGACTGTCAAGGGAGATGAAATGGCACCGGATAAGCCACAATCACTCAAATGCAACTCAGTTAAGAATCTAAGCCTGCTCAATATCTTAAACCAGTCTGGTTTCACTGTGGAAAGATCCATGTTATCCATCGCAAGATACTTCAAGGACACAAGCCCAGCTACCCATTCAAGATTATCAAGAACTAAACCCAAATTCTCCATATCAAGATATTGCAAGCTAGAAATGTTACCCAAACTTGGAGGAAGTAAACCACCAAAGCCAGCATTTGATAGGTTCAAATACTGCAACTTCTTCAAAGAGCCAAAGAATTCAGGAACTGGAATATCATTGAATGTAAAGTCAAATCTATGTATAAGTTTTAGAATATAG

Coding sequence (CDS)

ATGGCTACGAAGATGGATGTAGAGCACAAGGAAGCTATCAGCAATGTCATGATCCTCACGGACCCCGAAGGCGCGCCTTTGGGAGCTCCCATTGATCTTCCCCAAAATGCAGGGCCTCAGCAGCTTCGGCAAATGGTCAATAAGCTTCTCAACAAGATGGAGAAACCTTACCCACAACTTTATCAAGCAACTGGAAGTAAGCATTCGACCACGATCTTTTGGCTGCAAAAATGCAGAAAGGAACTAGAATCCCAGCTGCAAATCCAACCCCAAGACTCAGAAAGGGGTTCTCCACAGAGACCAGGATTTCCAGCAAAAGATGAAGCGGGAAAGCTTGGAGGAATGGGACCTGAGAACCTGTTGTTTGAAAGATCAAGATATGATAATTCTATCAGGTCCAAGACTTGCAACGAGCCAAGATTTGTGAGTGCAGGAATCGCTCCGGAAAATGCATTTGACCTTAAGATTTGGAAAATTAGTTCCAATCCAAGGAGGAATACTACCGACAAGACCATTATTCCCAAGATTCAGAGTTTCCAGATTGGAGAGATTTTGGAAAGATGGTGGGAGCTTTCCACCAGAGACAGAAAGACCAGGTTCGGCATTGCCTCACCTATATTCTTTGGTATTGAACCCGAGAATATGTTATTTGAAAGTTTGAGTGAAACAATCTCAAAGCTTGGAAGAGGAATAGGTCCTTCAAAGAGATTGGAGCTGAAATCAACATCTGCAAAGGGAGCTATTTTCAGCGGATCTAGATGCTCCAGGCTAAAGAGTGGACGAGCTGGATTGCAGTTTTCAGTTCCTTCAAGAAATTCAGTTAAATCAACGACAGAGAGAGAAGTGAAGTTGACTGTCAAGGGAGATGAAATGGCACCGGATAAGCCACAATCACTCAAATGCAACTCAGTTAAGAATCTAAGCCTGCTCAATATCTTAAACCAGTCTGGTTTCACTGTGGAAAGATCCATGTTATCCATCGCAAGATACTTCAAGGACACAAGCCCAGCTACCCATTCAAGATTATCAAGAACTAAACCCAAATTCTCCATATCAAGATATTGCAAGCTAGAAATGTTACCCAAACTTGGAGGAAGTAAACCACCAAAGCCAGCATTTGATAGGTTCAAATACTGCAACTTCTTCAAAGAGCCAAAGAATTCAGGAACTGGAATATCATTGAATGTAAAGTCAAATCTATGTATAAGTTTTAGAATATAG

Protein sequence

MATKMDVEHKEAISNVMILTDPEGAPLGAPIDLPQNAGPQQLRQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQRPGFPAKDEAGKLGGMGPENLLFERSRYDNSIRSKTCNEPRFVSAGIAPENAFDLKIWKISSNPRRNTTDKTIIPKIQSFQIGEILERWWELSTRDRKTRFGIASPIFFGIEPENMLFESLSETISKLGRGIGPSKRLELKSTSAKGAIFSGSRCSRLKSGRAGLQFSVPSRNSVKSTTEREVKLTVKGDEMAPDKPQSLKCNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKLEMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISLNVKSNLCISFRI

Homology

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BLAST of Carg07332 vs. TrEMBL
Match: tr|A0A2N9HRJ7|A0A2N9HRJ7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42540 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-11
Identity = 46/102 (45.10%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 295 KPQSLKCNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRY 354
           +PQ  +CNSVK  SL N+  QS  ++ERS   I R F++T PA HSRLS TK ++  SRY
Sbjct: 95  RPQKDRCNSVKTGSLFNVSIQSDPSIERSTPLILRCFRETRPAIHSRLSTTKFEWLTSRY 154

Query: 355 CKLEMLPKLGGSKPXXXXXXXXXXXXXXXXXKNSGTGISLNV 397
            KLE  PK GG  P                 KN+G G+ LNV
Sbjct: 155 SKLERFPKFGGIVPLNPACDRLRYCKFSKDPKNTGIGMPLNV 196

The following BLAST results are available for this feature:

BLAST of Carg07332 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07332 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07332 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07332 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9HRJ7\|A0A2N9HRJ7_FAGSY	2.8e-11	45.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42540 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012972	NLE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07332-RA	Carg07332-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012972	NLE	PFAM	PF08154	NLE	coord: 23..56 e-value: 7.8E-5 score: 23.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07332	CmaCh01G002360	Cucurbita maxima (Rimu)	carcmaB1059
Carg07332	CmoCh01G002450	Cucurbita moschata (Rifu)	carcmoB1033
Carg07332	Cla97C10G195040	Watermelon (97103) v2	carwmbB0794
Carg07332	Bhi11G001165	Wax gourd	carwgoB0894

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07332	Watermelon (97103) v1	carwmB0757
Carg07332	Watermelon (97103) v1	carwmB0759
Carg07332	Watermelon (97103) v2	carwmbB0796
Carg07332	Silver-seed gourd	carcarB453
Carg07332	Silver-seed gourd	carcarB605
Carg07332	Cucumber (Gy14) v2	carcgybB0756
Carg07332	Cucumber (Gy14) v2	carcgybB0760
Carg07332	Cucumber (Gy14) v1	carcgyB0857
Carg07332	Cucumber (Gy14) v1	carcgyB0864
Carg07332	Cucurbita maxima (Rimu)	carcmaB1057
Carg07332	Cucurbita maxima (Rimu)	carcmaB1058
Carg07332	Cucurbita maxima (Rimu)	carcmaB1060
Carg07332	Cucurbita moschata (Rifu)	carcmoB1031
Carg07332	Cucurbita moschata (Rifu)	carcmoB1032
Carg07332	Cucurbita moschata (Rifu)	carcmoB1034
Carg07332	Cucurbita pepo (Zucchini)	carcpeB1070
Carg07332	Cucurbita pepo (Zucchini)	carcpeB1071
Carg07332	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07332	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07332	Wild cucumber (PI 183967)	carcpiB0797
Carg07332	Wild cucumber (PI 183967)	carcpiB0801
Carg07332	Cucumber (Chinese Long) v2	carcuB0779
Carg07332	Cucumber (Chinese Long) v2	carcuB0783
Carg07332	Cucumber (Chinese Long) v3	carcucB0800
Carg07332	Cucumber (Chinese Long) v3	carcucB0804
Carg07332	Bottle gourd (USVL1VR-Ls)	carlsiB697
Carg07332	Bottle gourd (USVL1VR-Ls)	carlsiB699
Carg07332	Melon (DHL92) v3.5.1	carmeB0753
Carg07332	Melon (DHL92) v3.5.1	carmeB0755
Carg07332	Melon (DHL92) v3.6.1	carmedB0770
Carg07332	Melon (DHL92) v3.6.1	carmedB0768
Carg07332	Watermelon (Charleston Gray)	carwcgB0735
Carg07332	Watermelon (Charleston Gray)	carwcgB0738