Carg07292 (gene) Silver-seed gourd

NameCarg07292
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At1g63330-like isoform X3
LocationCucurbita_argyrosperma_scaffold_017 : 1170730 .. 1172652 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCCAAGACTGTAGCCTCCGCTATTTCTTCCTCTCTTTCGCCAGCTCCGTCGAAAGGCAAGCTCTCGTCTCTGTTTACTCGCCCACCAATAATTGCATCTTCAAATCCCCAAAATCCATCTCCAATTCCTGCCGAATCCCCGCCTATCATCTCGAAACCGCCAAATTCGAATGTTTCACCGGAAGTTTCGCTGGAAAAGTCAACTACAGAGATTCCGTTTCATGAACGGCTTCGGACGTTCCTTCAGAATTGCAAGACGGGTAATTTCACCGTATCAGAAGCATTTCAATTCTTTGACCTAATGATGCTTGCGAATCCTACCCCTGCGATGTCTTCATTCAATCTTTTACTTGGTGGACTTGCTAAGACTAAGCACTACTCTGAGGTTTTGAAGCTGTATTATAGAATGAGCTTAGCCGGACTTTTGCCTAATTACATAACGCTTAATATTTTGCTTAATTGCCTTTGTAATGTGAATCGGATTAGCGAAGGTCTAGCAGCCATGGCGGGGATTATAAGGAGAGGTTTTATTCCCAATATAGTGACATATACGTCCCTGATTAAGGGCTTGTGTATGGAGCATAGGATTAGTGAAGCTACGCGGCTGTTTATGAGAATGCAAAAGTTGGGTTGTAGGCCAAATGTGATTACTTATGGGACTTTAATCAAGGGACTTTGTCAAACGGGTAATACTAACATTGCACTTAAGTTGCACGAGGAAATGCTCAATGGGACTGGTCGATACGGCATTAGTTGTAAGCCTAACGTTATTTCTTATAGTACCATTATTGATGGGCTCTGTAAAGATGGGCGGGAAGACAAGGCAAGGGAACTTTTTGAGGAAATGAAAGCTCGGAGAATGCTTCCAGATGTGATTTCTTACAGCTCTTTGATTCATGGATTTTGCAATGGTGGAAAGTGGGAGGAGGCTAAATGTCTGTTCAATGAGATGGTGGATCTTGGTATTCAACCGAATGCTGTCACATTTAACGTGTTGATGGATATACTTTGCAAGGCAGGAAAGGTTATCGAGGCCAACGAGTTGCTAGAGGTGATGATTCAGAGAGGTAATGTTCCTGATTTGTTTACTTATAATACATTGATGGATGGGTTCTGTTTGGTTAGTGATCTAGACAGTGCAAGGGAACTGTTCCTTAGTATGCCAAGTAAGGGGTGTGAACCTAATGTGATTAGCTACAATGTGCTAATCAATGGGTATTGCAAAAATTGGAAGGTGGAAGAAGCAATGAAGATTTACAATGAAATGCTTCAAGTGGGTATTAAACCATCTGTGATAACATATAATGCCTTGCTAACGGGTCTTTTTCAGGCCGGGAAGGTTAATGATGCAAAGAAAATATTTGGTGTCATTCAAGCTCATGGTTTGGTGCCGAGTTCAAGTACATTGAGTATCTTTGTAGATGGGCTGTGTAAGAACGATTGTTTGTTAGAAGCAATGGAAATTTTTAACGAGCTTTCATACAACTTGAAATTGGACATTGATATCTTTAATTGTCTTATCGATGGCCTATGTAAAGCAGGGAAACTTGAAACAGCTTGGGAGTTCTTCGACAAAATTTCCCGTGAAGGGCTTCTGCCAAATGTTGTGACCTATTCCATTCTAATCCATGGGTGTTGTAAAGAAGGACAAGTAGAAAAGGCAAATGATTTATTTCGAAAGATGGAAGAAAATGGTTGTACGCCCAATGTCATTACCTACAATACACTTCTCCGTGGTTTCTACAAAAGTAATAAACGAGAGGAAGTGGTTGAGCTTCTTCATAGGATGGTTAAGAAAAATGTGGTGCCAGATGCTTCAACCTGCACCATAGTCTTAGACATGCTTTCCAAAGACGAAAAGTATAGGGGATGTTTGAACTTGCTTCCAATGTTTCCTGTCCAAGAGTATCGAGGTTGA

mRNA sequence

ATGGTTTCCAAGACTGTAGCCTCCGCTATTTCTTCCTCTCTTTCGCCAGCTCCGTCGAAAGGCAAGCTCTCGTCTCTGTTTACTCGCCCACCAATAATTGCATCTTCAAATCCCCAAAATCCATCTCCAATTCCTGCCGAATCCCCGCCTATCATCTCGAAACCGCCAAATTCGAATGTTTCACCGGAAGTTTCGCTGGAAAAGTCAACTACAGAGATTCCGTTTCATGAACGGCTTCGGACGTTCCTTCAGAATTGCAAGACGGGTAATTTCACCGTATCAGAAGCATTTCAATTCTTTGACCTAATGATGCTTGCGAATCCTACCCCTGCGATGTCTTCATTCAATCTTTTACTTGGTGGACTTGCTAAGACTAAGCACTACTCTGAGGTTTTGAAGCTGTATTATAGAATGAGCTTAGCCGGACTTTTGCCTAATTACATAACGCTTAATATTTTGCTTAATTGCCTTTGTAATGTGAATCGGATTAGCGAAGGTCTAGCAGCCATGGCGGGGATTATAAGGAGAGGTTTTATTCCCAATATAGTGACATATACGTCCCTGATTAAGGGCTTGTGTATGGAGCATAGGATTAGTGAAGCTACGCGGCTGTTTATGAGAATGCAAAAGTTGGGTTGTAGGCCAAATGTGATTACTTATGGGACTTTAATCAAGGGACTTTGTCAAACGGGTAATACTAACATTGCACTTAAGTTGCACGAGGAAATGCTCAATGGGACTGGTCGATACGGCATTAGTTGTAAGCCTAACGTTATTTCTTATAGTACCATTATTGATGGGCTCTGTAAAGATGGGCGGGAAGACAAGGCAAGGGAACTTTTTGAGGAAATGAAAGCTCGGAGAATGCTTCCAGATGTGATTTCTTACAGCTCTTTGATTCATGGATTTTGCAATGGTGGAAAGTGGGAGGAGGCTAAATGTCTGTTCAATGAGATGGTGGATCTTGGTATTCAACCGAATGCTGTCACATTTAACGTGTTGATGGATATACTTTGCAAGGCAGGAAAGGTTATCGAGGCCAACGAGTTGCTAGAGGTGATGATTCAGAGAGGTAATGTTCCTGATTTGTTTACTTATAATACATTGATGGATGGGTTCTGTTTGGTTAGTGATCTAGACAGTGCAAGGGAACTGTTCCTTAGTATGCCAAGTAAGGGGTGTGAACCTAATGTGATTAGCTACAATGTGCTAATCAATGGGTATTGCAAAAATTGGAAGGTGGAAGAAGCAATGAAGATTTACAATGAAATGCTTCAAGTGGGTATTAAACCATCTGTGATAACATATAATGCCTTGCTAACGGGTCTTTTTCAGGCCGGGAAGGTTAATGATGCAAAGAAAATATTTGGTGTCATTCAAGCTCATGGTTTGGTGCCGAGTTCAAGTACATTGAGTATCTTTGTAGATGGGCTGTGTAAGAACGATTGTTTGTTAGAAGCAATGGAAATTTTTAACGAGCTTTCATACAACTTGAAATTGGACATTGATATCTTTAATTGTCTTATCGATGGCCTATGTAAAGCAGGGAAACTTGAAACAGCTTGGGAGTTCTTCGACAAAATTTCCCGTGAAGGGCTTCTGCCAAATGTTGTGACCTATTCCATTCTAATCCATGGGTGTTGTAAAGAAGGACAAGTAGAAAAGGCAAATGATTTATTTCGAAAGATGGAAGAAAATGGTTGTACGCCCAATGTCATTACCTACAATACACTTCTCCGTGGTTTCTACAAAAGTAATAAACGAGAGGAAGTGGTTGAGCTTCTTCATAGGATGGTTAAGAAAAATGTGGTGCCAGATGCTTCAACCTGCACCATAGTCTTAGACATGCTTTCCAAAGACGAAAAGTATAGGGGATGTTTGAACTTGCTTCCAATGTTTCCTGTCCAAGAGTATCGAGGTTGA

Coding sequence (CDS)

ATGGTTTCCAAGACTGTAGCCTCCGCTATTTCTTCCTCTCTTTCGCCAGCTCCGTCGAAAGGCAAGCTCTCGTCTCTGTTTACTCGCCCACCAATAATTGCATCTTCAAATCCCCAAAATCCATCTCCAATTCCTGCCGAATCCCCGCCTATCATCTCGAAACCGCCAAATTCGAATGTTTCACCGGAAGTTTCGCTGGAAAAGTCAACTACAGAGATTCCGTTTCATGAACGGCTTCGGACGTTCCTTCAGAATTGCAAGACGGGTAATTTCACCGTATCAGAAGCATTTCAATTCTTTGACCTAATGATGCTTGCGAATCCTACCCCTGCGATGTCTTCATTCAATCTTTTACTTGGTGGACTTGCTAAGACTAAGCACTACTCTGAGGTTTTGAAGCTGTATTATAGAATGAGCTTAGCCGGACTTTTGCCTAATTACATAACGCTTAATATTTTGCTTAATTGCCTTTGTAATGTGAATCGGATTAGCGAAGGTCTAGCAGCCATGGCGGGGATTATAAGGAGAGGTTTTATTCCCAATATAGTGACATATACGTCCCTGATTAAGGGCTTGTGTATGGAGCATAGGATTAGTGAAGCTACGCGGCTGTTTATGAGAATGCAAAAGTTGGGTTGTAGGCCAAATGTGATTACTTATGGGACTTTAATCAAGGGACTTTGTCAAACGGGTAATACTAACATTGCACTTAAGTTGCACGAGGAAATGCTCAATGGGACTGGTCGATACGGCATTAGTTGTAAGCCTAACGTTATTTCTTATAGTACCATTATTGATGGGCTCTGTAAAGATGGGCGGGAAGACAAGGCAAGGGAACTTTTTGAGGAAATGAAAGCTCGGAGAATGCTTCCAGATGTGATTTCTTACAGCTCTTTGATTCATGGATTTTGCAATGGTGGAAAGTGGGAGGAGGCTAAATGTCTGTTCAATGAGATGGTGGATCTTGGTATTCAACCGAATGCTGTCACATTTAACGTGTTGATGGATATACTTTGCAAGGCAGGAAAGGTTATCGAGGCCAACGAGTTGCTAGAGGTGATGATTCAGAGAGGTAATGTTCCTGATTTGTTTACTTATAATACATTGATGGATGGGTTCTGTTTGGTTAGTGATCTAGACAGTGCAAGGGAACTGTTCCTTAGTATGCCAAGTAAGGGGTGTGAACCTAATGTGATTAGCTACAATGTGCTAATCAATGGGTATTGCAAAAATTGGAAGGTGGAAGAAGCAATGAAGATTTACAATGAAATGCTTCAAGTGGGTATTAAACCATCTGTGATAACATATAATGCCTTGCTAACGGGTCTTTTTCAGGCCGGGAAGGTTAATGATGCAAAGAAAATATTTGGTGTCATTCAAGCTCATGGTTTGGTGCCGAGTTCAAGTACATTGAGTATCTTTGTAGATGGGCTGTGTAAGAACGATTGTTTGTTAGAAGCAATGGAAATTTTTAACGAGCTTTCATACAACTTGAAATTGGACATTGATATCTTTAATTGTCTTATCGATGGCCTATGTAAAGCAGGGAAACTTGAAACAGCTTGGGAGTTCTTCGACAAAATTTCCCGTGAAGGGCTTCTGCCAAATGTTGTGACCTATTCCATTCTAATCCATGGGTGTTGTAAAGAAGGACAAGTAGAAAAGGCAAATGATTTATTTCGAAAGATGGAAGAAAATGGTTGTACGCCCAATGTCATTACCTACAATACACTTCTCCGTGGTTTCTACAAAAGTAATAAACGAGAGGAAGTGGTTGAGCTTCTTCATAGGATGGTTAAGAAAAATGTGGTGCCAGATGCTTCAACCTGCACCATAGTCTTAGACATGCTTTCCAAAGACGAAAAGTATAGGGGATGTTTGAACTTGCTTCCAATGTTTCCTGTCCAAGAGTATCGAGGTTGA

Protein sequence

MVSKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSPEVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGLAKTKHYSEVLKLYYRMSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHRISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPNVISYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFNEMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNVPDLFTYNTLMDGFCLVSDLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSVITYNALLTGLFQAGKVNDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYNLKLDIDIFNCLIDGLCKAGKLETAWEFFDKISREGLLPNVVTYSILIHGCCKEGQVEKANDLFRKMEENGCTPNVITYNTLLRGFYKSNKREEVVELLHRMVKKNVVPDASTCTIVLDMLSKDEKYRGCLNLLPMFPVQEYRG
BLAST of Carg07292 vs. NCBI nr
Match: XP_022953742.1 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-56
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0

Query: 1   MVSKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNV 60
           MV KTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNV
Sbjct: 1   MVPKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNV 60

Query: 61  SPEVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLG 120
           SPEVSLEKSTTEI FH RLRTFLQNCKTGNFTVSEA QFFDLMMLANPTPAMSSFNLLLG
Sbjct: 61  SPEVSLEKSTTEISFHGRLRTFLQNCKTGNFTVSEALQFFDLMMLANPTPAMSSFNLLLG 120

Query: 121 GLAKTKH 128
           GLAKTKH
Sbjct: 121 GLAKTKH 127

BLAST of Carg07292 vs. NCBI nr
Match: XP_023548637.1 (pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 5.8e-55
Identity = 122/128 (95.31%), Postives = 122/128 (95.31%), Query Frame = 0

Query: 1   MVSKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNV 60
           MVSKTVASAISSSLSPAPSKGKLSSL TRP  IASSNPQN SPIPAESPPIISKPPNSNV
Sbjct: 1   MVSKTVASAISSSLSPAPSKGKLSSLVTRPLRIASSNPQNLSPIPAESPPIISKPPNSNV 60

Query: 61  SPEVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLG 120
           SPEVSLEKSTTEI FHERLRTFLQNCKTGNFT SEAFQFFDLMMLANPTPAMSSFNLLLG
Sbjct: 61  SPEVSLEKSTTEISFHERLRTFLQNCKTGNFTASEAFQFFDLMMLANPTPAMSSFNLLLG 120

Query: 121 GLAKTKHY 129
           GLAKTKHY
Sbjct: 121 GLAKTKHY 128

BLAST of Carg07292 vs. NCBI nr
Match: XP_022992036.1 (pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 6.4e-54
Identity = 119/127 (93.70%), Postives = 120/127 (94.49%), Query Frame = 0

Query: 1   MVSKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNV 60
           MVSKTVASAISSSL PAPSKGKLSSLFT P IIASS PQNPSPI AESPP+ISKPPNSNV
Sbjct: 1   MVSKTVASAISSSLLPAPSKGKLSSLFTHPTIIASSKPQNPSPISAESPPVISKPPNSNV 60

Query: 61  SPEVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLG 120
           SPEVSLEKSTTEI FHERLRTFLQNCKTGNFTVSEA QFFDLMMLANPTPAMSSFNLLLG
Sbjct: 61  SPEVSLEKSTTEISFHERLRTFLQNCKTGNFTVSEALQFFDLMMLANPTPAMSSFNLLLG 120

Query: 121 GLAKTKH 128
           GLAKTKH
Sbjct: 121 GLAKTKH 127

BLAST of Carg07292 vs. NCBI nr
Match: XP_022155826.1 (pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-30
Identity = 84/130 (64.62%), Postives = 97/130 (74.62%), Query Frame = 0

Query: 1   MVSKTVASAIS--SSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNS 60
           MVSK+VASA S  +  S AP+KGKLSSLFT+ P I SSNPQ      ++ PP++S+PP  
Sbjct: 1   MVSKSVASASSVVAVSSSAPAKGKLSSLFTQSPRIRSSNPQVSPGSSSKRPPLLSRPPKP 60

Query: 61  NVSPEVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLL 120
            VSPE S E+ TT I F +R RTFLQNCKTGN T +EA QFFDLM+   PTPAMSSFNLL
Sbjct: 61  TVSPEDSPEELTTGISFQDRHRTFLQNCKTGNVTAAEALQFFDLMLRTKPTPAMSSFNLL 120

Query: 121 LGGLAKTKHY 129
           LGGLAK KHY
Sbjct: 121 LGGLAKIKHY 130

BLAST of Carg07292 vs. NCBI nr
Match: KGN44728.1 (hypothetical protein Csa_7G374710 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-14
Identity = 64/126 (50.79%), Postives = 74/126 (58.73%), Query Frame = 0

Query: 3   SKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSP 62
           SKTV SA SS + P  S    SSLFT  P I SSNP   S +  +S          NVSP
Sbjct: 5   SKTVPSA-SSIVKPNLS----SSLFTHSPTIPSSNPHFSSAVHHKS---------LNVSP 64

Query: 63  EVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGL 122
               +   T I F ++L  FL NCKTGN T ++AFQFF LMM +NPTP +SSF  LL GL
Sbjct: 65  ----QNFNTPISFQQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGL 112

Query: 123 AKTKHY 129
           AK KHY
Sbjct: 125 AKIKHY 112

BLAST of Carg07292 vs. TrEMBL
Match: tr|A0A1S4DYL3|A0A1S4DYL3_CUCME (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-14
Identity = 64/126 (50.79%), Postives = 74/126 (58.73%), Query Frame = 0

Query: 3   SKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSP 62
           SKTV SA SS + P  S    SSLFT  PII SSNPQ  SPI          P + +VSP
Sbjct: 5   SKTVPSA-SSIVRPNLS----SSLFTHSPIIPSSNPQFSSPI---------HPKSLHVSP 64

Query: 63  EVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGL 122
               +   T I   ++L  FL NCKTGN T ++AF FF LMM +NPTP +SSF  LL GL
Sbjct: 65  ----QNFNTPISCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGL 112

Query: 123 AKTKHY 129
            K KHY
Sbjct: 125 TKIKHY 112

BLAST of Carg07292 vs. TrEMBL
Match: tr|A0A0A0K5F6|A0A0A0K5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-14
Identity = 64/126 (50.79%), Postives = 74/126 (58.73%), Query Frame = 0

Query: 3   SKTVASAISSSLSPAPSKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSP 62
           SKTV SA SS + P  S    SSLFT  P I SSNP   S +  +S          NVSP
Sbjct: 5   SKTVPSA-SSIVKPNLS----SSLFTHSPTIPSSNPHFSSAVHHKS---------LNVSP 64

Query: 63  EVSLEKSTTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGL 122
               +   T I F ++L  FL NCKTGN T ++AFQFF LMM +NPTP +SSF  LL GL
Sbjct: 65  ----QNFNTPISFQQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGL 112

Query: 123 AKTKHY 129
           AK KHY
Sbjct: 125 AKIKHY 112

BLAST of Carg07292 vs. TrEMBL
Match: tr|A0A2P6PVI5|A0A2P6PVI5_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0289191 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-13
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 19  SKGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSPEVSLEKSTTEIPFHER 78
           SKGKLSSLFT P    SSN    S +   +  +I +P +S   P  S E  +  +P    
Sbjct: 4   SKGKLSSLFTNPERPTSSNSSKLSSL-FFTTQVIPRPTSS--YPTTSTEAPSPSVPIQTP 63

Query: 79  LRTFLQ-NCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGLAKTKHY 129
           L  FLQ NCK+GNFT++EA  +FD M+L  P P M+SFN LLGGLAK+KHY
Sbjct: 64  LEHFLQTNCKSGNFTLNEALHYFDRMILMQPVPPMASFNRLLGGLAKSKHY 111

BLAST of Carg07292 vs. TrEMBL
Match: tr|A0A0A0K784|A0A0A0K784_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 56/119 (47.06%), Postives = 66/119 (55.46%), Query Frame = 0

Query: 11  SSSLSPAPS-KGKLSSLFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSPEVSLEKS 70
           S +L P+PS K  LS L T    I SS PQ  S          +  PN    P +    +
Sbjct: 3   SKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSS----------THHPN----PILPAAFN 62

Query: 71  TTEIPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGLAKTKHY 129
             EI FH  L  FL+NCKTGN T  +AF FFDLMM ++P P +SSFN LLGGLAK  HY
Sbjct: 63  REEISFHHPLSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHY 107

BLAST of Carg07292 vs. TrEMBL
Match: tr|A0A1S4DYM0|A0A1S4DYM0_CUCME (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 73  IPFHERLRTFLQNCKTGNFTVSEAFQFFDLMMLANPTPAMSSFNLLLGGLAKTKHY 129
           + F  RL TFLQNC++G  T++EA  FF LMM +NPTP +SSFN LL GL K KHY
Sbjct: 2   LSFQHRLHTFLQNCRSGKITLNEALDFFQLMMCSNPTPPLSSFNQLLSGLTKIKHY 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022953742.11.8e-5696.85putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [C... [more]
XP_023548637.15.8e-5595.31pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita pepo subsp... [more]
XP_022992036.16.4e-5493.70pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima][more]
XP_022155826.11.3e-3064.62pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia][more]
KGN44728.13.8e-1450.79hypothetical protein Csa_7G374710 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DYL3|A0A1S4DYL3_CUCME2.5e-1450.79pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis... [more]
tr|A0A0A0K5F6|A0A0A0K5F6_CUCSA2.5e-1450.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1[more]
tr|A0A2P6PVI5|A0A2P6PVI5_ROSCH1.6e-1349.55Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
tr|A0A0A0K784|A0A0A0K784_CUCSA1.2e-1147.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1[more]
tr|A0A1S4DYM0|A0A1S4DYM0_CUCME1.7e-1060.71pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07292-RACarg07292-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 497..527
e-value: 2.6E-9
score: 36.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 470..494
e-value: 0.0086
score: 16.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 536..584
e-value: 2.1E-19
score: 69.3
coord: 396..443
e-value: 3.6E-18
score: 65.4
coord: 256..305
e-value: 2.4E-17
score: 62.7
coord: 180..229
e-value: 9.1E-19
score: 67.3
coord: 113..159
e-value: 6.5E-8
score: 32.5
coord: 326..374
e-value: 8.7E-15
score: 54.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 399..433
e-value: 1.5E-9
score: 35.4
coord: 259..293
e-value: 3.1E-10
score: 37.6
coord: 538..572
e-value: 3.7E-13
score: 46.8
coord: 434..467
e-value: 3.1E-6
score: 25.0
coord: 114..146
e-value: 1.9E-4
score: 19.4
coord: 504..537
e-value: 2.4E-9
score: 34.8
coord: 218..244
e-value: 1.0E-4
score: 20.2
coord: 183..217
e-value: 6.7E-9
score: 33.4
coord: 329..362
e-value: 8.0E-7
score: 26.9
coord: 148..182
e-value: 3.3E-4
score: 18.6
coord: 573..607
e-value: 1.3E-7
score: 29.3
coord: 364..398
e-value: 2.2E-9
score: 34.9
coord: 294..328
e-value: 1.3E-10
score: 38.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 501..535
score: 12.814
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..180
score: 8.868
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 397..431
score: 14.118
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 14.009
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..215
score: 12.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 9.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 432..466
score: 11.148
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 216..246
score: 9.909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 13.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 327..361
score: 12.101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 362..396
score: 12.814
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 571..605
score: 12.134
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 536..570
score: 14.907
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 467..497
score: 7.114
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 249..356
e-value: 1.3E-36
score: 128.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 357..426
e-value: 4.0E-24
score: 87.1
coord: 565..632
e-value: 7.1E-14
score: 53.7
coord: 497..564
e-value: 2.0E-24
score: 88.1
coord: 427..496
e-value: 5.8E-15
score: 57.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 79..248
e-value: 2.2E-37
score: 131.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 93..256
coord: 299..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..56
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 82..277
coord: 427..622
coord: 252..481