Carg07027 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07027
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-directed DNA methylation 4-like isoform X1
Location	Cucurbita_argyrosperma_scaffold_065 : 989234 .. 992268 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAAGTTCGTAGTTGTTCTCCGGCTCGCATGTTCTAGACCCTGAGCGTCGATCGTGTCTCCGATCGCTTCGCATATGGCCAGCATCGGCGAGAGTTCTTCTTCTGCTCCCAAATTCGCGGACGAAAAGCCAGTCTTAGTTAGGGTTAAGCGCAAAGCTTCCCAGTCTCGACTCGATGCGTTATGTGAGTTCTCTTCGGACGCTCGTTTTCATTCACTTCATCAAGGCCTTCATCTTGCTGATTTTAGTTGATGAATCGCCTTTACATTATTGTAATTTTTGGATATTAGCCGTCTCTTTTGATTTCTAACTATTCACGTATCAAATGGAGTTTGAATTGTTCGTTTCCGAGTTGACGTTCGGATAATTTGTATGTTGCAGGGCTGGAAATCAATGAGAGGCCACTGAAACGACCTCTTTTGGATTTTGATAATTTGTCTATTTCTGAAACGTTCCAGAAAGGTTTGATAATTTCTGAACCTATAATTGCGTTCTTTTCTTTTCACCAATCACTCTATAATCTACATAGGTGAAAAGAGGAAACAGCAGTTAGTAGCTATCTATGATTCTTCCACAAGAATATATAGTAACTGCTCCTGATTATACCCTGGTGTTTGCAGGGCTAGTGATTTTAAAAAATACAAACATGGATTCTTTGTCCCTTCATAAGAAAATTAATGGATGGATTTCATTGTTGTTATTGTTTCTTCTTTTTCTGTGAGGGAGGGGTGAATGGATTTATTTACTTTACTGTTCTTGCCAATTGATTAAATGTAAACTTTGATAGTTCGACCAAAATTGTACTGGATTTCTCAGTTGCATGGGTCAATGAAGTATATTTAAATATGGCTGTGTATAACTCCGTCCCTGATGGAATAGCTTTCTCTTGCATCAGAGGAACTTAAAACTAAGAAGATTTTTGTACAGCATGTGGAGACACTGAGAAGCTCTGAGGCCTCAGTTGACATTATTCAGTCGTTCGTGGTTAGTATTGTGGTCAGTTATTAATCTCCTTCTTGGACATTTTGACTAGCATCTTCATCCCTTGCTGTTTCCCCTTTAGGCACCAGATGCTGCTGGCAACATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGAGTGTATGCTGTCCTGTCTGTTGTTTGTTTGGTTCTTAGTTGTGCGGTACTTGTTGAATAATTTTCTCACTTTATCTAGTGTTCTGCAGCCAAGACAAGAACAGCTGTTGGTTAAAACTAGACAAGAACAAGAGGTCTGGTCTATGATGTCTTTTCTTTAATGCTTTTTCTTAAAATAGATATAATCAATGTTTTACCTGAAGAATTTGTCAGACTAGATTATAGATGGCATTCTCTAGTTGGACCAAGTTTTGTTCATATGTTGAACTGTTATATTATGTTGGTAACATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTACTAGGTTTTGGCAAAAAAAGCTAGATTTGAGCAAATATGGAGAAGTAGGAAAGGGATTAAAGATCCCAAAGACGACCAATTACGTGACGCATATCATATTTATGATATTGTTCGTCTTGATACAAATGAAACATCAAGTGAAGCACCAAAGGCGGAGTTAGTTCTTTAGTTCTGTCATTATGATATTGTTTGGTCATGATATTCTATAAGATCCTCATTTATGTGGCCATATTTTCTTTCGGTATTAATGCAGGTGTATGACTCTGGAGGATCAAAGCATGTTATCAAGTTATCTGCCTTTACTAAGAGAGTTTATTCCAAGTGCTGCTGAAGAGATTGAGTCAGATATAAATGCAAACACGATGAAACAAGATTGTAAGTATCATTTAATCCAGCAGTCACTTGAGGTATTTTGCTTGCAACTGTAGCTATCCTCCATTTTCCATTTGTTTTCCAGTTCTTGCCATGCCTGAGTTTCCTTCCTAGCTCACCCTTTTGTTATATCATTTGTATGTTCATAGGGCTGTCGTTACTGTAATTTCTTATTGCAATGTCTGTGTTTTCACTTGTTCTACAGTGCCCGTAGATGATTATGTATATGACTACTATACTGTGAAGAATAATGTTCCGATTGCCGAGGACGATGCCTCTAATCCATTTCCTTTGTGCGTTATTCTCTCGCTCTCTCTCTGTTTTCCCTCTCTGCTCTGGGTTATACTTGATTTTATTTTTTTGGAAATCATTTCACATATTTTTTCAGGATACAAGTCGACGACTTGGATCTATATGATGGGCCTGATGACTCGGACTATGAAAGTGATGATTCAAATGGTAAGTAGGTTTTTCCCTCTAGTTTAGAAACCTAAATTATAACTAATGTCTGTTGTTTCTAATATCTTTTTTGGTTTCAGCTGAAAACAATCCACACTTCGATTACCCAGATGAGGCGTCCGAAGAAGAAGAGTTGGAAAGTGAATCTACAAATGAAGAATCAGAAGAAGATGATGAGGACAAGCAGTCCTCAGAAGCTAATGATCTAGAAGAGGACGACCTGTCAGAGAATGGAGTTCAATTAGACGACGATGAAGTATATGGTGATTTTGACGAAGACGATGGCGATAGTTTTGATTACGATAGTAATGGTGGTCACGGAGAGGGTGAAGATTGGAGATGGTCCTACCGTTGAATTTTTGGTATTATAGGACAGCTTTTTTCGTCTTTGGGAGAGGGATGTTTGTTCTACCGCTTGTCCTATATCAGGTATTACCATTTTCCTTAAGTGAGTTGCTTAATAGGGAGAGGAATGTGCTTGTAATGACTAGGGATGTTCCTTTGGAGATTTAGAGGTCAAAATACACTTTGCTTTGCTACTTCAATAGAAATTAAAAGCCCTGTAGGCCTCCTTTGGTAATATATTCACCGTTCTCTGTTTCTTGTTGAGAAACAGATGTGTCGGGTTCTTGTTTCTAAAACGTTTCCAAAATAGACCAAAATCTGAGAAACTTTCTTTGTTATGTTCCTTCCCAACTTTCCTATCTTCAGCAGATTTCTTCTCTCTCACGCTCACCAAGAACGAAC

mRNA sequence

CAAGAAGTTCGTAGTTGTTCTCCGGCTCGCATGTTCTAGACCCTGAGCGTCGATCGTGTCTCCGATCGCTTCGCATATGGCCAGCATCGGCGAGAGTTCTTCTTCTGCTCCCAAATTCGCGGACGAAAAGCCAGTCTTAGTTAGGGTTAAGCGCAAAGCTTCCCAGTCTCGACTCGATGCGTTATGGCTGGAAATCAATGAGAGGCCACTGAAACGACCTCTTTTGGATTTTGATAATTTGTCTATTTCTGAAACGTTCCAGAAAGAGGAACTTAAAACTAAGAAGATTTTTGTACAGCATGTGGAGACACTGAGAAGCTCTGAGGCCTCAGTTGACATTATTCAGTCGTTCGTGGCACCAGATGCTGCTGGCAACATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGAGTCCAAGACAAGAACAGCTGTTGGTTAAAACTAGACAAGAACAAGAGGTTTTGGCAAAAAAAGCTAGATTTGAGCAAATATGGAGAAGTAGGAAAGGGATTAAAGATCCCAAAGACGACCAATTACGTGACGCATATCATATTTATGATATTGTTCGTCTTGATACAAATGAAACATCAAGTGAAGCACCAAAGGCGGAGTGTATGACTCTGGAGGATCAAAGCATGTTATCAAGTTATCTGCCTTTACTAAGAGAGTTTATTCCAAGTGCTGCTGAAGAGATTGAGTCAGATATAAATGCAAACACGATGAAACAAGATTGTAAGTATCATTTAATCCAGCAGTCACTTGAGGTATTTTGCTTGCAACTGGCTGTCGTTACTGTAATTTCTTATTGCAATGTCTGTGTTTTCACTTGTTCTACAGTGCCCGTAGATGATTATGTATATGACTACTATACTGTGAAGAATAATGTTCCGATTGCCGAGGACGATGCCTCTAATCCATTTCCTTTGATACAAGTCGACGACTTGGATCTATATGATGGGCCTGATGACTCGGACTATGAAAGTGATGATTCAAATGCTGAAAACAATCCACACTTCGATTACCCAGATGAGGCGTCCGAAGAAGAAGAGTTGGAAAGTGAATCTACAAATGAAGAATCAGAAGAAGATGATGAGGACAAGCAGTCCTCAGAAGCTAATGATCTAGAAGAGGACGACCTGTCAGAGAATGGAGTTCAATTAGACGACGATGAAGTATATGGTGATTTTGACGAAGACGATGGCGATAGTTTTGATTACGATAGTAATGGTGGTCACGGAGAGGGTGAAGATTGGAGATGGTCCTACCGTTGAATTTTTGGTATTATAGGACAGCTTTTTTCGTCTTTGGGAGAGGGATGTTTGTTCTACCGCTTGTCCTATATCAGGTATTACCATTTTCCTTAAGTGAGTTGCTTAATAGGGAGAGGAATGTGCTTGTAATGACTAGGGATGTTCCTTTGGAGATTTAGAGGTCAAAATACACTTTGCTTTGCTACTTCAATAGAAATTAAAAGCCCTGTAGGCCTCCTTTGGTAATATATTCACCGTTCTCTGTTTCTTGTTGAGAAACAGATGTGTCGGGTTCTTGTTTCTAAAACGTTTCCAAAATAGACCAAAATCTGAGAAACTTTCTTTGTTATGTTCCTTCCCAACTTTCCTATCTTCAGCAGATTTCTTCTCTCTCACGCTCACCAAGAACGAAC

Coding sequence (CDS)

ATGGCCAGCATCGGCGAGAGTTCTTCTTCTGCTCCCAAATTCGCGGACGAAAAGCCAGTCTTAGTTAGGGTTAAGCGCAAAGCTTCCCAGTCTCGACTCGATGCGTTATGGCTGGAAATCAATGAGAGGCCACTGAAACGACCTCTTTTGGATTTTGATAATTTGTCTATTTCTGAAACGTTCCAGAAAGAGGAACTTAAAACTAAGAAGATTTTTGTACAGCATGTGGAGACACTGAGAAGCTCTGAGGCCTCAGTTGACATTATTCAGTCGTTCGTGGCACCAGATGCTGCTGGCAACATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGAGTCCAAGACAAGAACAGCTGTTGGTTAAAACTAGACAAGAACAAGAGGTTTTGGCAAAAAAAGCTAGATTTGAGCAAATATGGAGAAGTAGGAAAGGGATTAAAGATCCCAAAGACGACCAATTACGTGACGCATATCATATTTATGATATTGTTCGTCTTGATACAAATGAAACATCAAGTGAAGCACCAAAGGCGGAGTGTATGACTCTGGAGGATCAAAGCATGTTATCAAGTTATCTGCCTTTACTAAGAGAGTTTATTCCAAGTGCTGCTGAAGAGATTGAGTCAGATATAAATGCAAACACGATGAAACAAGATTGTAAGTATCATTTAATCCAGCAGTCACTTGAGGTATTTTGCTTGCAACTGGCTGTCGTTACTGTAATTTCTTATTGCAATGTCTGTGTTTTCACTTGTTCTACAGTGCCCGTAGATGATTATGTATATGACTACTATACTGTGAAGAATAATGTTCCGATTGCCGAGGACGATGCCTCTAATCCATTTCCTTTGATACAAGTCGACGACTTGGATCTATATGATGGGCCTGATGACTCGGACTATGAAAGTGATGATTCAAATGCTGAAAACAATCCACACTTCGATTACCCAGATGAGGCGTCCGAAGAAGAAGAGTTGGAAAGTGAATCTACAAATGAAGAATCAGAAGAAGATGATGAGGACAAGCAGTCCTCAGAAGCTAATGATCTAGAAGAGGACGACCTGTCAGAGAATGGAGTTCAATTAGACGACGATGAAGTATATGGTGATTTTGACGAAGACGATGGCGATAGTTTTGATTACGATAGTAATGGTGGTCACGGAGAGGGTGAAGATTGGAGATGGTCCTACCGTTGA

Protein sequence

MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISETFQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPRQEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEAPKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQLAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDGPDDSDYESDDSNAENNPHFDYPDEASEEEELESESTNEESEEDDEDKQSSEANDLEEDDLSENGVQLDDDEVYGDFDEDDGDSFDYDSNGGHGEGEDWRWSYR

Homology

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BLAST of Carg07027 vs. NCBI nr
Match: XP_022949593.1 (RNA-directed DNA methylation 4 [Cucurbita moschata])

HSP 1 Score: 531.6 bits (1368), Expect = 2.4e-147
Identity = 285/323 (88.24%), Postives = 287/323 (88.85%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET
Sbjct: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
           FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR
Sbjct: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDP+DDQL DAYHIYDIVRLDTNETSSEA
Sbjct: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPRDDQLHDAYHIYDIVRLDTNETSSEA 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQD                
Sbjct: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQD---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG
Sbjct: 241 -------------------LPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 288

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           PDDSDYESDDSNAENNPHFDYPD
Sbjct: 301 PDDSDYESDDSNAENNPHFDYPD 288

[Close]

BLAST of Carg07027 vs. NCBI nr
Match: XP_023522069.1 (RNA-directed DNA methylation 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528.9 bits (1361), Expect = 1.5e-146
Identity = 283/323 (87.62%), Postives = 287/323 (88.85%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET
Sbjct: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
           FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR
Sbjct: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQL DAYHIYDIVRLDTNETSSEA
Sbjct: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLHDAYHIYDIVRLDTNETSSEA 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANT+KQD                
Sbjct: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTLKQD---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVKNNVPIA+DDASNPFPLIQVDDLDLYDG
Sbjct: 241 -------------------LPVDDYVYDYYTVKNNVPIADDDASNPFPLIQVDDLDLYDG 288

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           PDDS+YESDDSNAENNPHFDYPD
Sbjct: 301 PDDSEYESDDSNAENNPHFDYPD 288

[Close]

BLAST of Carg07027 vs. NCBI nr
Match: XP_022998602.1 (RNA-directed DNA methylation 4 [Cucurbita maxima])

HSP 1 Score: 511.5 bits (1316), Expect = 2.5e-141
Identity = 277/322 (86.02%), Postives = 280/322 (86.96%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MASIGESSSSAPK ADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET
Sbjct: 1   MASIGESSSSAPKPADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
           F+K ELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR
Sbjct: 61  FKKAELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           QEQLLVKTRQEQEVL KKARFEQIWRSRKGIKD KDDQL DAYHIYDIVRLDTNETSS A
Sbjct: 121 QEQLLVKTRQEQEVLTKKARFEQIWRSRKGIKDAKDDQLHDAYHIYDIVRLDTNETSSGA 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           PKA+CMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQD                
Sbjct: 181 PKADCMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQD---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVKNNV IAEDDASNPFPLIQVDDLDLYDG
Sbjct: 241 -------------------LPVDDYVYDYYTVKNNVQIAEDDASNPFPLIQVDDLDLYDG 287

Query: 301 PDDSDYESDDSNAENNPHFDYP 323
           PDDSDYESDDSNAENNPHFDYP
Sbjct: 301 PDDSDYESDDSNAENNPHFDYP 287

[Close]

BLAST of Carg07027 vs. NCBI nr
Match: XP_022154907.1 (RNA-directed DNA methylation 4 [Momordica charantia])

HSP 1 Score: 469.9 bits (1208), Expect = 8.5e-129
Identity = 252/323 (78.02%), Postives = 269/323 (83.28%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MA+IGESSSS PK AD KPVLVRVKRKASQSRLDALWLEINERPLKRPLLDF+NLSISET
Sbjct: 1   MATIGESSSSVPKLADGKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFENLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
           FQ EELKTKKIFVQHVETL+SSEA+VDI+QSFVAPDAAG +EN++KNEERRRNFKRE PR
Sbjct: 61  FQNEELKTKKIFVQHVETLKSSEATVDIVQSFVAPDAAGTVENSVKNEERRRNFKREIPR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           Q+QLL K RQEQEVLAK ARFEQIWRSRKG+KD KDDQL D YHIYDIVRLDTN+ SSE 
Sbjct: 121 QDQLLSKARQEQEVLAKNARFEQIWRSRKGVKDAKDDQLHDMYHIYDIVRLDTNKISSEV 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           P+ E M+LEDQSMLSSYLPLLREFIPSAA EIESDI+AN MKQD                
Sbjct: 181 PEQEYMSLEDQSMLSSYLPLLREFIPSAAAEIESDIHANMMKQD---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              VPVDDYVYDYYTVK+++ IAEDDASNPFPLIQVDDLDLYDG
Sbjct: 241 -------------------VPVDDYVYDYYTVKSDMEIAEDDASNPFPLIQVDDLDLYDG 288

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           PDDSDYESDDSNAENNPHFDYPD
Sbjct: 301 PDDSDYESDDSNAENNPHFDYPD 288

[Close]

BLAST of Carg07027 vs. NCBI nr
Match: XP_004139832.1 (PREDICTED: RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_7G238430 [Cucumis sativus])

HSP 1 Score: 449.1 bits (1154), Expect = 1.6e-122
Identity = 247/323 (76.47%), Postives = 263/323 (81.42%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MA IGESSSS  K  DEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDF+NLSISET
Sbjct: 1   MALIGESSSSVSKLVDEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFENLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
             KEELKTKKIFVQHVETLRSS+A+VDI+QSFVAPDAA  IENNLKNEERRRNFKRE  R
Sbjct: 61  LHKEELKTKKIFVQHVETLRSSDATVDIVQSFVAPDAASTIENNLKNEERRRNFKREISR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           Q+QLLVK RQEQE+ AK ARFEQIWRSRKG+KD KDDQLRD YHIYDIVRLDTNE SSE+
Sbjct: 121 QDQLLVKARQEQELAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSES 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           PK E M+LEDQSMLSSYLPLLREFIPSAA EIESDI+AN MKQ+                
Sbjct: 181 PKQEQMSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQN---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVKN+V IAEDDAS+PFPLIQVDDLD +DG
Sbjct: 241 -------------------LPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLD-HDG 287

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           P DSDYE+DDSNAENNP FDYPD
Sbjct: 301 PSDSDYETDDSNAENNPCFDYPD 287

[Close]

BLAST of Carg07027 vs. TAIR10
Match: AT2G30280.1 (RNA-directed DNA methylation 4)

HSP 1 Score: 227.3 bits (578), Expect = 1.7e-59
Identity = 144/328 (43.90%), Postives = 199/328 (60.67%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           M  +GESS+      +EKPV+VRVKRK  QS LDA WLEINERPLKRP LDF  LSIS++
Sbjct: 1   MDGVGESSTQ--NEVEEKPVIVRVKRKVGQSLLDAFWLEINERPLKRPTLDFSKLSISDS 60

Query: 61  FQK-----EELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFK 120
            ++     E++K KK+ V+H+ET+  SE + DII SF   D      +  K EER+  FK
Sbjct: 61  GERGPSVAEDVKPKKVLVRHLETVTDSETTADIIHSFFESDHNEKSCSKGKFEERKIAFK 120

Query: 121 RESPRQEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNE 180
           +++ R+EQ L K+ Q+Q++ ++ ARFEQIWRSRKG K    + + +  H +D++R+DT E
Sbjct: 121 KDN-RKEQRLTKSVQKQQIASENARFEQIWRSRKGNK----EGIHEKCHFFDVIRVDTEE 180

Query: 181 TSSEAPKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLE 240
               A   E  +LEDQ ML+S+LPLLRE IP+AAEEIE+DI ++                
Sbjct: 181 RRDNA--QEFTSLEDQKMLASFLPLLRECIPTAAEEIEADIQSS---------------- 240

Query: 241 VFCLQLAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDL 300
                                      ++YVYDYY V   + I+ED + N FPL+ V+D 
Sbjct: 241 -------------------------HTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDE 278

Query: 301 DLY-DGPDDSDYESDDSNAENNPHFDYP 323
           + + DG D+SDY+S+DSNAE++P  DYP
Sbjct: 301 EEFCDGSDESDYDSEDSNAEDHPKTDYP 278

[Close]

BLAST of Carg07027 vs. Swiss-Prot
Match: sp|Q8GYP3|RDM4_ARATH (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.1e-58
Identity = 144/328 (43.90%), Postives = 199/328 (60.67%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           M  +GESS+      +EKPV+VRVKRK  QS LDA WLEINERPLKRP LDF  LSIS++
Sbjct: 1   MDGVGESSTQ--NEVEEKPVIVRVKRKVGQSLLDAFWLEINERPLKRPTLDFSKLSISDS 60

Query: 61  FQK-----EELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFK 120
            ++     E++K KK+ V+H+ET+  SE + DII SF   D      +  K EER+  FK
Sbjct: 61  GERGPSVAEDVKPKKVLVRHLETVTDSETTADIIHSFFESDHNEKSCSKGKFEERKIAFK 120

Query: 121 RESPRQEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNE 180
           +++ R+EQ L K+ Q+Q++ ++ ARFEQIWRSRKG K    + + +  H +D++R+DT E
Sbjct: 121 KDN-RKEQRLTKSVQKQQIASENARFEQIWRSRKGNK----EGIHEKCHFFDVIRVDTEE 180

Query: 181 TSSEAPKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLE 240
               A   E  +LEDQ ML+S+LPLLRE IP+AAEEIE+DI ++                
Sbjct: 181 RRDNA--QEFTSLEDQKMLASFLPLLRECIPTAAEEIEADIQSS---------------- 240

Query: 241 VFCLQLAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDL 300
                                      ++YVYDYY V   + I+ED + N FPL+ V+D 
Sbjct: 241 -------------------------HTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDE 278

Query: 301 DLY-DGPDDSDYESDDSNAENNPHFDYP 323
           + + DG D+SDY+S+DSNAE++P  DYP
Sbjct: 301 EEFCDGSDESDYDSEDSNAEDHPKTDYP 278

[Close]

BLAST of Carg07027 vs. TrEMBL
Match: tr|A0A0A0K5Q3|A0A0A0K5Q3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.0e-122
Identity = 247/323 (76.47%), Postives = 263/323 (81.42%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MA IGESSSS  K  DEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDF+NLSISET
Sbjct: 1   MALIGESSSSVSKLVDEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFENLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
             KEELKTKKIFVQHVETLRSS+A+VDI+QSFVAPDAA  IENNLKNEERRRNFKRE  R
Sbjct: 61  LHKEELKTKKIFVQHVETLRSSDATVDIVQSFVAPDAASTIENNLKNEERRRNFKREISR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           Q+QLLVK RQEQE+ AK ARFEQIWRSRKG+KD KDDQLRD YHIYDIVRLDTNE SSE+
Sbjct: 121 QDQLLVKARQEQELAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSES 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           PK E M+LEDQSMLSSYLPLLREFIPSAA EIESDI+AN MKQ+                
Sbjct: 181 PKQEQMSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQN---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVKN+V IAEDDAS+PFPLIQVDDLD +DG
Sbjct: 241 -------------------LPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLD-HDG 287

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           P DSDYE+DDSNAENNP FDYPD
Sbjct: 301 PSDSDYETDDSNAENNPCFDYPD 287

[Close]

BLAST of Carg07027 vs. TrEMBL
Match: tr|A0A1S4DWJ0|A0A1S4DWJ0_CUCME (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.8e-119
Identity = 241/323 (74.61%), Postives = 258/323 (79.88%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MA IGESSSS PK  DEKPVLVRVKRKASQSRLDALWLEINERPLKRP LDF+NLSISET
Sbjct: 1   MALIGESSSSVPKLVDEKPVLVRVKRKASQSRLDALWLEINERPLKRPFLDFENLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
             KEELKTKKI VQHVETLRSSEA+ DI+QSFVAPDAA  IENNLKNEERRRNFKRE  R
Sbjct: 61  LYKEELKTKKILVQHVETLRSSEATADIVQSFVAPDAASTIENNLKNEERRRNFKREISR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           Q+QLLVK RQEQE++AK ARFEQIWRSRKG+KD KDDQL D YHIYDIVRLDTNE SSEA
Sbjct: 121 QDQLLVKARQEQELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEA 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           P+ E M+LEDQSMLSSYLPLLREFIPSAA EIESDI+ + MKQ+                
Sbjct: 181 PRQEQMSLEDQSMLSSYLPLLREFIPSAAAEIESDIDPSMMKQN---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVK +V I EDDAS+PFPLIQVDDLD +DG
Sbjct: 241 -------------------LPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLD-HDG 287

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           P DSDYE+DDSNAENNP FDYPD
Sbjct: 301 PSDSDYETDDSNAENNPCFDYPD 287

[Close]

BLAST of Carg07027 vs. TrEMBL
Match: tr|A0A1S3BG45|A0A1S3BG45_CUCME (RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 9.9e-118
Identity = 240/323 (74.30%), Postives = 257/323 (79.57%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MA IGESSSS PK  DEKPVLVRVKRKASQSRLDALWLEINERPLKRP LDF+NLSISET
Sbjct: 1   MALIGESSSSVPKLVDEKPVLVRVKRKASQSRLDALWLEINERPLKRPFLDFENLSISET 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
             KEELKTKKI VQHVETLRSSEA+ DI+QSFVAPDAA  IENNLKNEERRRNFKRE  R
Sbjct: 61  LYKEELKTKKILVQHVETLRSSEATADIVQSFVAPDAASTIENNLKNEERRRNFKREISR 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           Q+QLLVK RQEQE++AK ARFEQIWRSRKG+KD KDDQL D YHIYDIVRLDTNE SSEA
Sbjct: 121 QDQLLVKARQEQELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEA 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
           P+   M+LEDQSMLSSYLPLLREFIPSAA EIESDI+ + MKQ+                
Sbjct: 181 PRQ--MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDPSMMKQN---------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                              +PVDDYVYDYYTVK +V I EDDAS+PFPLIQVDDLD +DG
Sbjct: 241 -------------------LPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLD-HDG 285

Query: 301 PDDSDYESDDSNAENNPHFDYPD 324
           P DSDYE+DDSNAENNP FDYPD
Sbjct: 301 PSDSDYETDDSNAENNPCFDYPD 285

[Close]

BLAST of Carg07027 vs. TrEMBL
Match: tr|A0A2I4FAA5|A0A2I4FAA5_9ROSI (RNA-directed DNA methylation 4 OS=Juglans regia OX=51240 GN=LOC108996967 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.1e-79
Identity = 172/314 (54.78%), Postives = 212/314 (67.52%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MASIGESS + P   D+KPV+VRVKRKASQS LDA WLEINERPLKR LLDF+NLSIS++
Sbjct: 1   MASIGESSCAPPNSTDDKPVIVRVKRKASQSPLDAFWLEINERPLKRSLLDFENLSISDS 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
             KEELKT+K+ +QHVET+ SSEA +D++Q FV P +A     N K E+RR  FK+E  R
Sbjct: 61  SGKEELKTQKVLLQHVETISSSEAIIDVVQLFVEPSSADASLGNTKGEQRRHTFKKEHER 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAY-HIYDIVRLDTNETSSE 180
           Q++LL K R EQEVLAK ARFEQ+WRSR+G K+   D+  D     YD+VR+D  E S++
Sbjct: 121 QDRLLSKARNEQEVLAKNARFEQVWRSRRGNKEAMHDKALDGMCRFYDVVRVDGEERSNK 180

Query: 181 APKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCL 240
               E M+LED+ +LSSYLPLLREFIPSAA +IESD++A   KQ                
Sbjct: 181 VELEEDMSLEDRKLLSSYLPLLREFIPSAASQIESDLHACMSKQ---------------- 240

Query: 241 QLAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYD 300
                                  DDY YD YTV++ + I ++DASNPFPL+QVD+ D YD
Sbjct: 241 -----------------------DDYEYDVYTVRDGMDIIKEDASNPFPLVQVDEEDFYD 275

Query: 301 GPDDSDYESDDSNA 314
           GPD SDYE+DDSNA
Sbjct: 301 GPDGSDYETDDSNA 275

[Close]

BLAST of Carg07027 vs. TrEMBL
Match: tr|M5W819|M5W819_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa016474mg PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.1e-76
Identity = 165/314 (52.55%), Postives = 217/314 (69.11%), Query Frame = 0


Query: 1   MASIGESSSSAPKFADEKPVLVRVKRKASQSRLDALWLEINERPLKRPLLDFDNLSISET 60
           MA +GESSS+  K  ++KPV+VRVKRKA QS LDA WLEINERP KRPLLDF+NLS+S++
Sbjct: 1   MAVVGESSSALAKSPEDKPVIVRVKRKALQSPLDAFWLEINERPQKRPLLDFENLSMSDS 60

Query: 61  FQKEELKTKKIFVQHVETLRSSEASVDIIQSFVAPDAAGNIENNLKNEERRRNFKRESPR 120
             KEELKTKK+FVQHVET+ S   +VD+++SFV  ++    +   +NEER+  FK+E+ +
Sbjct: 61  AAKEELKTKKVFVQHVETVSSFHTTVDVVKSFVDLNSDDVCDRKTRNEERKDTFKKEN-K 120

Query: 121 QEQLLVKTRQEQEVLAKKARFEQIWRSRKGIKDPKDDQLRDAYHIYDIVRLDTNETSSEA 180
           Q+Q+L K RQ+QEV+AK ARFEQIWRSRKG K+   ++L +  H YD+VR+D  E S+E 
Sbjct: 121 QDQILSKARQKQEVVAKNARFEQIWRSRKGNKETSHEKLHEMCHFYDVVRVDVEERSNEL 180

Query: 181 PKAECMTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDCKYHLIQQSLEVFCLQ 240
            + + ++LEDQ ML+SYLPLLREFIPSAA EIESD++AN+ KQ  +              
Sbjct: 181 QQEDEISLEDQRMLNSYLPLLREFIPSAASEIESDLSANSSKQASE-------------- 240

Query: 241 LAVVTVISYCNVCVFTCSTVPVDDYVYDYYTVKNNVPIAEDDASNPFPLIQVDDLDLYDG 300
                                 D YVYD Y VK  + I  +++S  FPL+QVDD DLYDG
Sbjct: 241 ----------------------DGYVYDLYAVKEEMDIDTENSSKSFPLVQVDDEDLYDG 277

Query: 301 PDDSDYESDDSNAE 315
           PD+S+Y++DDSNAE
Sbjct: 301 PDESEYDTDDSNAE 277

The following BLAST results are available for this feature:

BLAST of Carg07027 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949593.1	2.4e-147	88.24	RNA-directed DNA methylation 4 [Cucurbita moschata]	[more]
XP_023522069.1	1.5e-146	87.62	RNA-directed DNA methylation 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022998602.1	2.5e-141	86.02	RNA-directed DNA methylation 4 [Cucurbita maxima]	[more]
XP_022154907.1	8.5e-129	78.02	RNA-directed DNA methylation 4 [Momordica charantia]	[more]
XP_004139832.1	1.6e-122	76.47	PREDICTED: RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothet...	[more]

BLAST of Carg07027 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30280.1	1.7e-59	43.90	RNA-directed DNA methylation 4	[more]

BLAST of Carg07027 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYP3\|RDM4_ARATH	3.1e-58	43.90	RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1	[more]

BLAST of Carg07027 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5Q3\|A0A0A0K5Q3_CUCSA	1.0e-122	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1	[more]
tr\|A0A1S4DWJ0\|A0A1S4DWJ0_CUCME	1.8e-119	74.61	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3BG45\|A0A1S3BG45_CUCME	9.9e-118	74.30	RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2I4FAA5\|A0A2I4FAA5_9ROSI	3.1e-79	54.78	RNA-directed DNA methylation 4 OS=Juglans regia OX=51240 GN=LOC108996967 PE=4 SV...	[more]
tr\|M5W819\|M5W819_PRUPE	1.1e-76	52.55	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa016474mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013883	TF_Iwr1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07027-RA	Carg07027-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 338..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..384
None	No IPR available	PANTHER	PTHR31934:SF2	RNA-DIRECTED DNA METHYLATION 4	coord: 1..361
None	No IPR available	PANTHER	PTHR31934	FAMILY NOT NAMED	coord: 1..361
IPR013883	Transcription factor Iwr1	PFAM	PF08574	Iwr1	coord: 263..324 e-value: 2.5E-4 score: 21.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07027	CmaCh01G007170	Cucurbita maxima (Rimu)	carcmaB0731
Carg07027	CmoCh01G007440	Cucurbita moschata (Rifu)	carcmoB0708
Carg07027	Cp4.1LG02g11300	Cucurbita pepo (Zucchini)	carcpeB0738

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07027	Watermelon (97103) v2	carwmbB0544
Carg07027	Watermelon (97103) v2	carwmbB0545
Carg07027	Watermelon (97103) v2	carwmbB0547
Carg07027	Wax gourd	carwgoB0632
Carg07027	Wax gourd	carwgoB0630
Carg07027	Silver-seed gourd	carcarB350
Carg07027	Cucumber (Gy14) v2	carcgybB0524
Carg07027	Cucumber (Gy14) v2	carcgybB0526
Carg07027	Cucumber (Gy14) v1	carcgyB0597
Carg07027	Cucumber (Gy14) v1	carcgyB0601
Carg07027	Cucurbita maxima (Rimu)	carcmaB0728
Carg07027	Cucurbita moschata (Rifu)	carcmoB0705
Carg07027	Cucurbita pepo (Zucchini)	carcpeB0737
Carg07027	Wild cucumber (PI 183967)	carcpiB0555
Carg07027	Wild cucumber (PI 183967)	carcpiB0556
Carg07027	Cucumber (Chinese Long) v2	carcuB0548
Carg07027	Cucumber (Chinese Long) v2	carcuB0549
Carg07027	Cucumber (Chinese Long) v3	carcucB0553
Carg07027	Cucumber (Chinese Long) v3	carcucB0555
Carg07027	Bottle gourd (USVL1VR-Ls)	carlsiB472
Carg07027	Bottle gourd (USVL1VR-Ls)	carlsiB475
Carg07027	Melon (DHL92) v3.5.1	carmeB0522
Carg07027	Melon (DHL92) v3.5.1	carmeB0524
Carg07027	Melon (DHL92) v3.6.1	carmedB0528
Carg07027	Melon (DHL92) v3.6.1	carmedB0530
Carg07027	Watermelon (Charleston Gray)	carwcgB0504
Carg07027	Watermelon (Charleston Gray)	carwcgB0506
Carg07027	Watermelon (97103) v1	carwmB0515
Carg07027	Watermelon (97103) v1	carwmB0517