Carg06766 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06766
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At5g50280, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_012 : 881010 .. 881781 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTACGTCTTCGGTCTTAAAGATAGAACTGATTGGGCTTACGGAATTCGGGCCTCTATTTCTGCTTCCAGTAACCCTAATCGTCCTGACGAGGCCCAGTTCTAAGCTCGTTTTACTGATTTAATTTGCTCGTCTTACCCTATGGATGCGTCGTCGTGCCCCCGATTTACGAATTTTCAGATGAAGCTGAAATTGATCTCGACGAAGACAAGGAGCAATTTGGCTCCGTGAGGTCGAATTCTAGGGCTATATCGAATGGCGTCGTCGGAGCGATTGTGCGAACTGCGAGGAATTTGCCGGAAAATGTGACTCTGGGGGATTCTTTGGGAGATTTTGACGGAAGAATTTGTGAGGAAGTATTTCTATGAATGGAGGAGTTTGCAGGAGATACTGCGATGTCTTGGCTTATGGTCTGTAAGAGGTACGAGATTAATCTTAAGTTCATTGTTCTCTTTGTTTCTTGTTTGTTAATTAAGTTGCTGCTTAATTTAGGTTTGTCGTAGCTTTTTCTTTATGGAGGAACTTGAATATGAGGAAACTTGATTGAACTTAGAACTGATGAAGTGCTGAATGTCTGATAATTTGTTTGCCATGGATATCAACTTGATGCTTGACATTTGATATATCACTACATTTTTGTTATTCTTCGAGGAGGCTTGGCTGCGAATATGAGATCTGAATCATTCTTACAAGGTGTGGAAACCTCTTCCTATTAGATGCGTTTTAAAACCGTCAGGTTGACGACTATACTTAACCGGTCAAAACAG

mRNA sequence

ATGAGGTCTACGTCTTCGGTCTTAAAGATAGAACTGATTGGGCTTACGGAATTCGGGCCTCTATTTCTGCTTCCAGTAACCCTAATCGTCCTGACGAGGCCCAATGAAGCTGAAATTGATCTCGACGAAGACAAGGAGCAATTTGGCTCCGTGAGGTCGAATTCTAGGGCTATATCGAATGGCGTCGTCGGAGCGATTGTGCGAACTGCGAGGAATTTGCCGGAAAATGTGACTCTGGGGGATTCTTTGGGAGATTTTGACGGAAGAATTTGTGAGGAAGTTTGTCGTAGCTTTTTCTTTATGGAGGAACTTGAATATGAGGAAACTTGATTGAACTTAGAACTGATGAAGTGCTGAATGTCTGATAATTTGTTTGCCATGGATATCAACTTGATGCTTGACATTTGATATATCACTACATTTTTGTTATTCTTCGAGGAGGCTTGGCTGCGAATATGAGATCTGAATCATTCTTACAAGGTGTGGAAACCTCTTCCTATTAGATGCGTTTTAAAACCGTCAGGTTGACGACTATACTTAACCGGTCAAAACAG

Coding sequence (CDS)

ATGAGGTCTACGTCTTCGGTCTTAAAGATAGAACTGATTGGGCTTACGGAATTCGGGCCTCTATTTCTGCTTCCAGTAACCCTAATCGTCCTGACGAGGCCCAATGAAGCTGAAATTGATCTCGACGAAGACAAGGAGCAATTTGGCTCCGTGAGGTCGAATTCTAGGGCTATATCGAATGGCGTCGTCGGAGCGATTGTGCGAACTGCGAGGAATTTGCCGGAAAATGTGACTCTGGGGGATTCTTTGGGAGATTTTGACGGAAGAATTTGTGAGGAAGTTTGTCGTAGCTTTTTCTTTATGGAGGAACTTGAATATGAGGAAACTTGA

Protein sequence

MRSTSSVLKIELIGLTEFGPLFLLPVTLIVLTRPNEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVCRSFFFMEELEYEET

Homology

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BLAST of Carg06766 vs. NCBI nr
Match: XP_023001232.1 (pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 36  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC 95
           EAEI  D+DK+Q GSV  NSR + +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Sbjct: 143 EAEIAPDDDKKQSGSVSRNSRVLPDGVVGDIVRTARNLPQNTTLGEALGDFEGKIDEKEC 202

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BLAST of Carg06766 vs. NCBI nr
Match: XP_023520086.1 (pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 5.1e-12
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 36  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC 95
           EAEI  DEDK+Q G V  NSRA+ +GVVG IVRTARNLP N TLG++LGDF+G+I E+ C
Sbjct: 137 EAEIAPDEDKKQSGLVSRNSRALPDGVVGDIVRTARNLPLNTTLGEALGDFEGKIDEKEC 196

[Close]

BLAST of Carg06766 vs. NCBI nr
Match: XP_022924164.1 (pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 8.7e-12
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 36  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC 95
           EAEI   EDK+Q G V  NSRA+ +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Sbjct: 136 EAEIAPGEDKKQSGLVSRNSRALPDGVVGDIVRTARNLPQNTTLGEALGDFEGKIDEKEC 195

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BLAST of Carg06766 vs. NCBI nr
Match: XP_008439140.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 35  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEV 94
           NEAE+ L+EDKEQ GS   NSR + +G+VG IV  ARNL +N+TLG++LG+F+GRI E+ 
Sbjct: 139 NEAEVTLEEDKEQLGSASRNSRVLPDGLVGEIVGIARNLSQNMTLGEALGEFEGRISEKE 198

Query: 95  C 96
           C
Sbjct: 199 C 199

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BLAST of Carg06766 vs. NCBI nr
Match: XP_022137654.1 (pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Momordica charantia] >XP_022137656.1 pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-11
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 35  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEV 94
           +EAEI +DE   Q  SV  N RA+ +GVVG I+RTARNLPEN TLG++L DFDGRI E+ 
Sbjct: 132 DEAEITIDEVAGQLSSVSQNFRALPDGVVGDIMRTARNLPENTTLGEALADFDGRIGEKQ 191

Query: 95  C 96
           C
Sbjct: 192 C 192

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BLAST of Carg06766 vs. TrEMBL
Match: tr|A0A1S3AY38|A0A1S3AY38_CUCME (pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484023 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 35  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEV 94
           NEAE+ L+EDKEQ GS   NSR + +G+VG IV  ARNL +N+TLG++LG+F+GRI E+ 
Sbjct: 139 NEAEVTLEEDKEQLGSASRNSRVLPDGLVGEIVGIARNLSQNMTLGEALGEFEGRISEKE 198

Query: 95  C 96
           C
Sbjct: 199 C 199

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BLAST of Carg06766 vs. TrEMBL
Match: tr|A0A0A0LWH7|A0A0A0LWH7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 35  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEV 94
           NEAE+ L+EDKEQ  S   NSR +  G VG IV  ARNL +N+TLG++LG+F+GRI E+ 
Sbjct: 133 NEAEVTLEEDKEQLRSASRNSRVLPGGPVGEIVGIARNLSQNMTLGEALGEFEGRISEKE 192

Query: 95  C 96
           C
Sbjct: 193 C 193

[Close]

BLAST of Carg06766 vs. TrEMBL
Match: tr|A0A2N9FIZ2|A0A2N9FIZ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14872 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 29  IVLTRPNEAEID--LDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDF 88
           IV     E++I   L E+KEQ   V S+SR +  G+VG IV+ AR+LPEN+TLG+ LGD+
Sbjct: 138 IVSETETESDIGDLLFEEKEQMSHVNSDSRPLPEGIVGEIVKIARDLPENLTLGEVLGDY 197

Query: 89  DGRICEEVC 96
           + R+ E+ C
Sbjct: 198 EKRVGEKQC 206

[Close]

BLAST of Carg06766 vs. TrEMBL
Match: tr|A0A2P6P5C5|A0A2P6P5C5_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0191671 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 41  LDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC 96
           L+  K+Q G   S+S  +S+G+VG I++ ARNLP+N+TLG+ LG F+G++ E+ C
Sbjct: 140 LEAQKQQLGP-DSDSNPLSDGIVGQILQKARNLPQNMTLGEELGGFEGKVGEKEC 193

[Close]

BLAST of Carg06766 vs. TrEMBL
Match: tr|A0A0D2N683|A0A0D2N683_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G062100 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-05
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 35  NEAEIDL-DEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEE 94
           N  E DL  E K+Q G    +S  + +G+VG I+R ARNLPEN TLG+ +G + G++ E+
Sbjct: 148 NAEEEDLFSEAKQQRGYTYEDSTELPDGIVGEIIRAARNLPENSTLGEFMGGYQGKLSEK 207

Query: 95  VC 96
            C
Sbjct: 208 EC 209

The following BLAST results are available for this feature:

BLAST of Carg06766 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001232.1	1.8e-12	65.00	pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita ...	[more]
XP_023520086.1	5.1e-12	66.67	pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita ...	[more]
XP_022924164.1	8.7e-12	65.00	pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita ...	[more]
XP_008439140.1	1.1e-11	59.02	PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic ...	[more]
XP_022137654.1	4.3e-11	62.30	pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Momordica ...	[more]

BLAST of Carg06766 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg06766 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06766 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY38\|A0A1S3AY38_CUCME	7.6e-12	59.02	pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Cucumis ...	[more]
tr\|A0A0A0LWH7\|A0A0A0LWH7_CUCSA	1.9e-10	57.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050000 PE=4 SV=1	[more]
tr\|A0A2N9FIZ2\|A0A2N9FIZ2_FAGSY	2.5e-07	47.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14872 PE=4 SV=1	[more]
tr\|A0A2P6P5C5\|A0A2P6P5C5_ROSCH	2.4e-05	47.27	Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen...	[more]
tr\|A0A0D2N683\|A0A0D2N683_GOSRA	3.1e-05	45.16	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G062100 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06766-RA	Carg06766-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06766	MELO3C002322	Melon (DHL92) v3.5.1	carmeB0499
Carg06766	Cla97C03G054410	Watermelon (97103) v2	carwmbB0517

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06766	Carg07567	Silver-seed gourd	carcarB481

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06766	Silver-seed gourd	carcarB484
Carg06766	Cucumber (Gy14) v2	carcgybB0500
Carg06766	Cucumber (Gy14) v1	carcgyB0571
Carg06766	Cucurbita maxima (Rimu)	carcmaB0686
Carg06766	Cucurbita maxima (Rimu)	carcmaB0688
Carg06766	Cucurbita maxima (Rimu)	carcmaB0689
Carg06766	Cucurbita maxima (Rimu)	carcmaB0692
Carg06766	Cucurbita moschata (Rifu)	carcmoB0669
Carg06766	Cucurbita moschata (Rifu)	carcmoB0670
Carg06766	Cucurbita moschata (Rifu)	carcmoB0673
Carg06766	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06766	Cucurbita pepo (Zucchini)	carcpeB0695
Carg06766	Cucurbita pepo (Zucchini)	carcpeB0698
Carg06766	Cucurbita pepo (Zucchini)	carcpeB0699
Carg06766	Wild cucumber (PI 183967)	carcpiB0531
Carg06766	Cucumber (Chinese Long) v2	carcuB0523
Carg06766	Cucumber (Chinese Long) v3	carcucB0529
Carg06766	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06766	Melon (DHL92) v3.6.1	carmedB0504
Carg06766	Watermelon (Charleston Gray)	carwcgB0480
Carg06766	Watermelon (97103) v1	carwmB0489
Carg06766	Wax gourd	carwgoB0601