Carg06621 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06621
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LAC12
Location	Cucurbita_argyrosperma_scaffold_012 : 25662 .. 31892 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAACCAAGCTCCTGGATTGTTCGCCCTGATTCTGATGGCCGCCCAGCCTCCGGTCGACACCGCTACTGTGTTTCTCTCCGGCGGATCGACGAGATTATACTTCGCCGGATCCCTGGCCACATTGAAATTCCCAAATCCTCTGCCGACGACGAAGAAATTGTGCCCATGGACATGAATTGGATGATTCTCCACATTCAAAAAACTTGTCCCCTGAAACACGATTTCCAAATCTGTCCCGTATGCAACTTCCAAAACCCTAGTTCCAAATTTTGCGTTCATGTTGTTCGTCAATGGGTTCGCACCCGTGTAATCATAAATCTTCGGAGGTTTTTCTGGAAAATCGGAAGAGTAGGTCTTAGTAGCCGTGTTCCTGTAATGAGATTCCAATATGGACAAAGCCGGACGAACGAAGGATTGATTGTTCATAGAAGCAAAGAAGCTCTTCCCGTTCAAACCCTGGCAAGATTTCCCAGATGGGCAATCTTGAAGGTTGAGGCTTATAGTTATGACAACTCTTTTATGAACTGTTTTAGGAACATTACATGGGTACATAGGAGATCCAAGGCTGCGGAGTTTGTTCAAAAATGCCGTAGCAAACGCAGTATCCTTCATTTCTGGGAGGTTTTCAGGTAATTTTGAGCTAAATTTCTTGATTTTTGTGCTGTTGTATCTCAAGAAGCCAATGGAGGTGGAATTGTTGAAGGGGAAAATTGAAGTTACATAGGGTGTGATAGCCATTGGGAACATTTGAGAGTGCTCTGGAACTTGATCTGTATTGAGCAGGAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGCTTTGTGTATGCAGCATCAACTTCCACCACTGTCAATGTGTGATTGGCTATGGCGAAGAAAAGTTCATTGTTGAGTGCTGCATTGATGACTCTCAGCAGGTAAGTTTTCCCCCTTTCTACTGTTGAAATGAATGTGTCTGCATTGATTGATTGTTGTGATGATTGGAAATTATGTTTAGAAATGAGACGTTTTGGTAGTGAAAGTGTTGGATTTACCTTTGGTAGAGGAAGGATATAGAGGTCCCGGTAAGCCATTTATGGTGTAGGCATCAGAAACGTTAGGCCCTCCTCCATGTTTCAACATCTCGTTTTCAACTTCTTCCACATCTCCATTCCACCATTCACCTGTGTATGTGAAGTAAAAACTGAAGAACTAATCATCACAGATCATAGATCATGAACTTTTATGAAAAATCATCAAACCAAAGCATCTAAAAGTACTGAAACAATGAAGGATTGGTTTGGAATGATTATTCGAAAGAGAAACTTTTAAATGAAAACACTGTTAAAAACCACGAATCCTTCTCTAGAGCTCTCGAACAAAGTACACCTTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGTCCCCTTAATCGAGGCTCGACTTCTTCTTTGGAGCCCTCGAACAAAGTACATCCTTTTTTCGACACTCGAGTCACTTTTGACTACTCCTTCGAGGTTGACAACTTCTTTGTTCGACATTTGATGATTATATTGACATGGCTAAGTTAAGGGCATGACTCCGATACCTATTATAAGCCACGAACCTCCACAATGGTATGATATTGTCCACTTCGAGCATAGGCTCTCATGGTTTTGCTTTTGGTTTCCCCAAAAAGCCTCATACCAATGGAGATGTATTTCTTACTTATAAACGCATGATCAACCCTTTAATTAGCCGATGTGGTACTCATTTTCCAACAATCCTCAACAAACACTTCTTCTATGAGCTAGGGAGAAACACTAATGTTCTCTGTTTAAGAATTTTTAAAAACACTTTTGATCATTAAACCAAGTCACTATCAAATTTTGATTGGTTTGAGAAGTGTTTAAATGGGTTAAAAGCATATTTTATTCTTTCTAAAGTCATCCCAAACTCACTCAAGACGAGCGAGACTTACCAAAGAGAATAGGAATCTCAGCTTCAATGGGAGAAGAGGAGAATGGGTAAGGCATGCGAGGGTAAATGATGAAGGCACCATGCACAGAAGCTCGTTGCCATGAATAATGTGCATGCCACCATAGTGTCCCTCTTTGATCATTCACTGAGAACTTGTATGTGTATGATTCACCAGCTCTGATAGGACACTGTGTTATGTAAGCTGGACCATCTGCCCATCCTGTTCTTAGTTGCTTCACCCCATGCCTGCAAATCATCAGATTTGTTATGGATTGAACTTGTTTAGCTTAGAGTTGAAAAGTCGAACTTTTTTATGTGTAAATTTGCTTATTTATAGGCTCATCTCGTGGAGGGAAAAGCCAAAATTGAGTTCTAAACGTGTAATGTTGTTTGGCAAAGAATGCTTTGTTCTATATTTAGAGCGTATAGCATGTTTGAAACTTACCAATGAATGGTTGTATTTTCATTCATGCAATTGTTGACCTTGATTCGAACAGTATCACCTTCATGAACTGCAATGGTTGGCCCTGGATACTGTCCATTCACAGTTAGAAGTTGCTTTGTATGGCCCAACCTTCTCACCTTCTTCCACTCCACCTTATAGGAAACAAAATCATCACGCTTTTGAGTTGAAATGGCAGAGTAATGTCAATAACCACAAGGATGTTCATATGTTTTTAGAGCCAAAAAAAAAAAAAAAACAAAAAAAAAAATCAAAAACAAAAAAGACGCTTTCTTCATCGAGCTTACATTAAACTCAAAGCGTTTAATGACAGGAGAAGCAAAGCTAAATGACACAAAACCAGCTAGGAAGATGCTTATGAATATCAGCAACATCCCACATTGCTGGCTGAGGCTCCCCATTGTCATCAAGTTAGCTAACAATCTATATACTACACAAAGTTGCACTTTTTGCTCACTTTGAACTCAAATTGTGCTGTCATTTGGCACAGTTTGTGAATCCTTTTAAAGTTGTGGGGGTTGGTGTGTAAGTGGGGTTAATTGCTGCTTGATATCGTATGGGCAATGTCAATTGGTTGTTGTTTAATTATTGATATGAAGATTAGGTGTTTGGCTACTGAAATATTATTGATTCTTATTGCATTTTAACATGAAATTATCATCCTATTTACAAGCTTTGCATAAAGTTCCATATAGTTTTGTTTAATTTGTCAACTTCCTAGATATCCTCTTGCCATTTCAATCAAAGAACTTGATTATTAGTGTGAAAAATCAAGACCCAAAATTGAATTGGTTTGGTATGAGTTTATCTTGTTTGTAAAGTAATAATGTTAGGTTATCTAAGAAATGAGCAGCTTCAGACTACTTTGTTACAGATGGAGGCTCGGGGACGGTAGACACATCGAGATTAATGAGGATCCATGAATCGCTAGTATAGGGCACTTCAAGCCAGACTAGGCCTACGAAAACTATGAAGGTCGTTATATTGACTCTTTTAAAGATGGATCTGTCAAATGTAGTAGAGTCTAGTTGTCCCATGAGAATAGATGATTGAAGCTAACGCCCTATATAATTTAATTTAGTGGAATAATTTTGATTTAACACGTTCTTTACGTTCTCTAGGGAGATGTGTTCTACTTGACAAAAGATTTATGTATGATTATATTATTATTTTCCCGGTTCATGAATGTTGAAATATTGCATTAGAAAATTCAAATGGTTCAATATTGCAAGTATATTGCATCTACTCCATTTGAAATTTGAGTTTCATTGGCCCTACCAGGGTTGCCTAACCTTCTGGATAAAACTTAGTAACATTGCACTGTTTGAATTCAAAATTTCCCCAAATATTATTTTCTATCAACATCAATTTAAAAGATTAATCAAACCGATTCTTCTACAAAATTTTCAGCCAAACTAGCTTTGAGTCTCTACCCAGTGATTAAAAAAAAGGTGTATTTGGTCGAGTATAGCTAATATGACTTTTTTGATCTATAGTTCTTCTTCTTTCTCTCTTGACCAATGCTTGAATCACCTAAACAGTTTGAACCTTCGAAGATTAGGTGGGTAAGTGAAATTTCCCAGACTCTAATTATGAAGTTTTTCCCAATGATGCAGCCATAACAAGGAATACAACCAAATAATCCCTTGGACAGCAAGTTGGAAGCCTATAATGTATTACCTTGTTCTGACTGTGTGTGTGAGTGTATATATATAGATATAGATATAGATATAGATATACAAGGAGCATTTTTTTCTATGCTGATGATCTCAGAATGTTGGAAAGCAAGTAATAGGGTTGGTAGTAGAAAATTCTTGGCAATTTCTTCTTCCTAACAGTTACATTTTATTTTTAGTACCAAGTTTTAATAGTGGTATCCCGTCAATTTAATGAAGTTGCATATAGACCAGTCTAAATACTCGATGAATACGAGATAATAAGAAAAAAAATCTAGTTCTCTTTCTAAAATGAGTGTTAGGGTGTATTAACACATATTTTCTTTCCGCATGTCAAAATATTTGGCAAACTAAAATTCAGAAAGTACTTTCTACTTGGATGGAACAAACTTTTGCATATTATTTACAAGAAAATGGGTGTATTTCCAATTTCCTCTATATTTCAATAGTTCAAAGATGAGGGACAAAATCATACTCTTCTTGTTCGTTCATTAAACTTAAGGGACCAAAGTGAAATTTGCCTCATCGAGCACTTTTTCTCCCAGGGAAATGGTGGCCAGATCTCACCTTCTGCCTCCTGTCTTTAGCAGCTAAATATATGAACATGAAGTCAACTCTGAAGGACTGCAATCTTTTGAGTCGATTCATCAACTGCTTCACTTTTCACCTCAGAACTCGTTTCTTCCTCCTGTGAAGATTTATAAATGCATAAAAGTTGCATCAAAAGAGAGAACTTTGGTACTGATGTACGTTTCCTTTTAGTACTTGCTTTTCATTTTCACTTTCGTTCTTCAAGAGAGATTTGAGTCATAGTTTTAATAAGTTGGTTTATGAAGCTGGAAATTGAGAAGTATTCATTGGTTTCATCTCTACTTGAACTATACAAAAGATTGAATTGGTACAAAATCAGGCATGTAACAAGAGTTATATGTAAGTTGATGAATTGTAAAAAATTATTATAACTAGGGTTCATGTAAATTGGATTTATGGAGCTTATATTATTAGAAAATCTGAACTTATTTCTTTCTATAAGCATACTAACATAACAAATTTAGATTTGATTTCCTAACCCTATGCTAAACAATTCTATCTCATGAGCTAAGTGACTTAAGCTCTACATCTATGCAAAAAAGGCTTAGAAATATATAAGACAGATTTTCACATGTATCTCTCTTTTATCTCTGATAGGACATATGATCACAGAACCATATATATGTATACACCAGCTAAGAGTTTCAAAATGATTTGGATATATGGCCGAGATGTCTAAATATAACATATCCCTCGTATCTGTTTTAAACTTTGAGCCGATCACATCTAATGCATCAAAATTCTAGCAAGATGAGTGATTCATACGAAGGAACAAGGAATAGGGATACTATTTATTACCTCAGACTTCTCCTTCGGTATTACCCCTACACACCTCGATGCACTAATGCTAGCACTTTTGAAGAGGTGGGCACTCTTCTCTTCCCCCCTGCGTTCATTTTGTGCATTTGAGTTTATATTTCCAGAAACAATTTTGGAAGCCATAGCAAAGAAGAAGTGAAAACCTACCTTCCAAATTCATTGTTATGCTCAGCGTTCTTGTGCTCAGGTGGAGTAACCTTCTCCCTGAAAATATGATATATGATAAATTTAGATGGAAATGAAGTATTTACTGCAAATCAATGCGTACAAATCAATCTTCTGAGCGTTCTTGTGCTCAGCGTTCATTGTTATGCTCAGCGTTCATTGTTATGCTCAGCGTTCTTGTGCTCAGGTGCAGAATTTCATAACTTACCCTTGTACAGGAAATAAATTATCATTCTGATACCATATTTCTCGACACAAGATCTTAAAATTATAATATACTGCCGCAGACCATCAATCCTTTGTCCAGAAGGAGAACAGAGGAAAAGGATATAGACAATGCTTATTAGTTATTTGATCATGTGGCTTCTTAAAATTGTATCATTGACTTGAAGAGAACAACCAAATTTCTATTCGAATTATTACCGAGGTAAGGAAACGTTCTGCCTTTGAAGTGGAGCACTTCTTTGACCTTTACTGAAGTTCTCTTCCAGATGCGCAAACTGAAGTTTAAATCGATCAACACCACTGACATGTGCAAGAGGAAGAAATGA

mRNA sequence

ATGTATGAACCAAGCTCCTGGATTGTTCGCCCTGATTCTGATGGCCGCCCAGCCTCCGGTCGACACCGCTACTGTGTTTCTCTCCGGCGGATCGACGAGATTATACTTCGCCGGATCCCTGGCCACATTGAAATTCCCAAATCCTCTGCCGACGACGAAGAAATTGTGCCCATGGACATGAATTGGATGATTCTCCACATTCAAAAAACTTGTCCCCTGAAACACGATTTCCAAATCTGTCCCGTATGCAACTTCCAAAACCCTAGTTCCAAATTTTGCGTTCATGTTGTTCGTCAATGGGTTCGCACCCGTGTAATCATAAATCTTCGGAGGTTTTTCTGGAAAATCGGAAGAGTAGGTCTTAGTAGCCGTGTTCCTGTAATGAGATTCCAATATGGACAAAGCCGGACGAACGAAGGATTGATTGTTCATAGAAGCAAAGAAGCTCTTCCCGTTCAAACCCTGGCAAGATTTCCCAGATGGGCAATCTTGAAGGTTGAGGCTTATAGTTATGACAACTCTTTTATGAACTGTTTTAGGAACATTACATGGGTACATAGGAGATCCAAGGCTGCGGAGTTTGTTCAAAAATGCCGTAGCAAACGCAGTATCCTTCATTTCTGGGAGGTTTTCAGCATCAACTTCCACCACTGTCAATGTGTGATTGGCTATGGCGAAGAAAAGTTCATTGTTGAGTGCTGCATTGATGACTCTCAGCAGAGGAAGGATATAGAGGTCCCGTCATCCCAAACTCACTCAAGACGAGCGAGACTTACCAAAGAGAATAGGAATCTCAGCTTCAATGGGAGAAGAGGAGAATGGGTAAGGCATGCGAGGTATCACCTTCATGAACTGCAATGGTTGGCCCTGGATACTGTCCATTCACAGTTAGAAGTTGCTTTGTATGGCCCAACCTTCTCACCTTCTTCCACTCCACCTTATAGGAAACAAAATCATCACGCTTTTGAGTTGAAATGGCAGAGTAATGTCAATAACCACAAGGATATGCGCAAACTGAAGTTTAAATCGATCAACACCACTGACATGTGCAAGAGGAAGAAATGA

Coding sequence (CDS)

ATGTATGAACCAAGCTCCTGGATTGTTCGCCCTGATTCTGATGGCCGCCCAGCCTCCGGTCGACACCGCTACTGTGTTTCTCTCCGGCGGATCGACGAGATTATACTTCGCCGGATCCCTGGCCACATTGAAATTCCCAAATCCTCTGCCGACGACGAAGAAATTGTGCCCATGGACATGAATTGGATGATTCTCCACATTCAAAAAACTTGTCCCCTGAAACACGATTTCCAAATCTGTCCCGTATGCAACTTCCAAAACCCTAGTTCCAAATTTTGCGTTCATGTTGTTCGTCAATGGGTTCGCACCCGTGTAATCATAAATCTTCGGAGGTTTTTCTGGAAAATCGGAAGAGTAGGTCTTAGTAGCCGTGTTCCTGTAATGAGATTCCAATATGGACAAAGCCGGACGAACGAAGGATTGATTGTTCATAGAAGCAAAGAAGCTCTTCCCGTTCAAACCCTGGCAAGATTTCCCAGATGGGCAATCTTGAAGGTTGAGGCTTATAGTTATGACAACTCTTTTATGAACTGTTTTAGGAACATTACATGGGTACATAGGAGATCCAAGGCTGCGGAGTTTGTTCAAAAATGCCGTAGCAAACGCAGTATCCTTCATTTCTGGGAGGTTTTCAGCATCAACTTCCACCACTGTCAATGTGTGATTGGCTATGGCGAAGAAAAGTTCATTGTTGAGTGCTGCATTGATGACTCTCAGCAGAGGAAGGATATAGAGGTCCCGTCATCCCAAACTCACTCAAGACGAGCGAGACTTACCAAAGAGAATAGGAATCTCAGCTTCAATGGGAGAAGAGGAGAATGGGTAAGGCATGCGAGGTATCACCTTCATGAACTGCAATGGTTGGCCCTGGATACTGTCCATTCACAGTTAGAAGTTGCTTTGTATGGCCCAACCTTCTCACCTTCTTCCACTCCACCTTATAGGAAACAAAATCATCACGCTTTTGAGTTGAAATGGCAGAGTAATGTCAATAACCACAAGGATATGCGCAAACTGAAGTTTAAATCGATCAACACCACTGACATGTGCAAGAGGAAGAAATGA

Protein sequence

MYEPSSWIVRPDSDGRPASGRHRYCVSLRRIDEIILRRIPGHIEIPKSSADDEEIVPMDMNWMILHIQKTCPLKHDFQICPVCNFQNPSSKFCVHVVRQWVRTRVIINLRRFFWKIGRVGLSSRVPVMRFQYGQSRTNEGLIVHRSKEALPVQTLARFPRWAILKVEAYSYDNSFMNCFRNITWVHRRSKAAEFVQKCRSKRSILHFWEVFSINFHHCQCVIGYGEEKFIVECCIDDSQQRKDIEVPSSQTHSRRARLTKENRNLSFNGRRGEWVRHARYHLHELQWLALDTVHSQLEVALYGPTFSPSSTPPYRKQNHHAFELKWQSNVNNHKDMRKLKFKSINTTDMCKRKK

Homology

[Close]

BLAST of Carg06621 vs. NCBI nr
Match: KGN64164.1 (hypothetical protein Csa_1G042715 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 8.0e-22
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 128 MRFQYGQSRTNEGLIVHRSKEALPVQTLARFPRWAILKVEAYSYDNSFMNCFRNITWVHR 187
           M FQYG+ R+NEGLIVHRS+++L VQTLA FPRWAIL++EAY  ++SF+NCFRNIT V  
Sbjct: 1   MGFQYGRVRSNEGLIVHRSEKSLSVQTLAGFPRWAILEIEAYGNEHSFVNCFRNITRVQG 60

Query: 188 RSKAAEFVQKCRSKRSILHFWEVF 212
           R KA EF  KC  K  ILH  EVF
Sbjct: 61  RIKATEFAGKCSGKGCILHIGEVF 84

[Close]

BLAST of Carg06621 vs. TrEMBL
Match: tr|A0A0A0LT31|A0A0A0LT31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042715 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.3e-22
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 128 MRFQYGQSRTNEGLIVHRSKEALPVQTLARFPRWAILKVEAYSYDNSFMNCFRNITWVHR 187
           M FQYG+ R+NEGLIVHRS+++L VQTLA FPRWAIL++EAY  ++SF+NCFRNIT V  
Sbjct: 1   MGFQYGRVRSNEGLIVHRSEKSLSVQTLAGFPRWAILEIEAYGNEHSFVNCFRNITRVQG 60

Query: 188 RSKAAEFVQKCRSKRSILHFWEVF 212
           R KA EF  KC  K  ILH  EVF
Sbjct: 61  RIKATEFAGKCSGKGCILHIGEVF 84

[Close]

BLAST of Carg06621 vs. TrEMBL
Match: tr|A0A0A9KGA8|A0A0A9KGA8_ARUDO (LAC12 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1  MYEPSSWIVRPDSDGRPASGRHRYCVSLRRIDEIILRRIPGHIEIPKSSADDEEIVPMDM 60
          M++P +W+V  ++DG PA+G H   V+L  IDE+ L RI G +E+ +   DD E+  + +
Sbjct: 1  MHKPHTWVVSTEADGDPAAGGHADGVALDGIDEVKLSRIVGRVEVAEPLTDDVEVEAVQV 60

Query: 61 NWMILHIQKTCPLKH 76
            + L  +    L H
Sbjct: 61 QRVALGAEDAGVLHH 75

The following BLAST results are available for this feature:

BLAST of Carg06621 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64164.1	8.0e-22	65.48	hypothetical protein Csa_1G042715 [Cucumis sativus]	[more]

BLAST of Carg06621 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg06621 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06621 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT31\|A0A0A0LT31_CUCSA	5.3e-22	65.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042715 PE=4 SV=1	[more]
tr\|A0A0A9KGA8\|A0A0A9KGA8_ARUDO	1.3e-04	34.67	LAC12 OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06621-RA	Carg06621-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06621	ClCG04G010730	Watermelon (Charleston Gray)	carwcgB0481
Carg06621	CmaCh18G000640	Cucurbita maxima (Rimu)	carcmaB0692
Carg06621	Lsi02G002250	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06621	MELO3C035758.2	Melon (DHL92) v3.6.1	carmedB0504

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06621	Cucumber (Gy14) v2	carcgybB0500
Carg06621	Cucumber (Gy14) v1	carcgyB0568
Carg06621	Cucurbita moschata (Rifu)	carcmoB0673
Carg06621	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06621	Wild cucumber (PI 183967)	carcpiB0531
Carg06621	Cucumber (Chinese Long) v2	carcuB0523
Carg06621	Cucumber (Chinese Long) v3	carcucB0529
Carg06621	Melon (DHL92) v3.5.1	carmeB0499
Carg06621	Watermelon (97103) v1	carwmB0493
Carg06621	Watermelon (97103) v2	carwmbB0518
Carg06621	Wax gourd	carwgoB0600