Carg06517 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06517
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	dicer-like 4
Location	Cucurbita_argyrosperma_scaffold_051 : 1064230 .. 1065803 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGCTCTGTGAAATTGATGTTTCAGACAGTACACTACAGAGAGATCGTCGGAGAAGAGCCGAAGAATCGAGAAAATCAGATGGAGAACACTCCTTCCTGTCCTCGAAGTGTGAATGTCAATCTCAAAAATCTTCCTCCAATTCATAATCCGTGTGTTGGAAATGCAAATCACTCCTCGATTCCGGTAACATGCGGTTGATTGTATTCAATTTTCTTTGAAGTTCGAAGGAATTTGAGATTTAACTGAATTGTTTTAGGCTAAATTTGAGAAATCGAGGTATATTGGGCGCGTTCCTCAGTTTATGCCACCTAATCACTCGCCGGATATAAGGCCGAACGAATATGATGGCGTGCCGATGAACCCGGCGTGTTTTGATTCTGCTCGTTCTCCTAATGCAAGGACGACTCCGGAGGAAAGGAAAGAGAATTTCGGGGATTCAGCTTCGAGGTCCAGTGGTTGCAGTCATGACTCGACCAAAGAAGGTACCGGTTTAAACCTAATTCCTTGAATTTGATTGCTTCTTAGGATTCGAGATAGATGACTCCTGTTATGTTTCATCATCTTCATGGATCGATCTTCTCTTTGTGATTTTACTGGTTTTCTTCCAACGATTGATTTCCAAATGCGATTTATTGTTCATCTTACAGCCCACAATCCTTCTCCGATTTCGTCCCTAGCATGCATCCATTAATTTCAAAGTTCAGTTGTGGTTTTCTTTCTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTTCCCCTTTTTTTATTAAAGAAACGTTGTCTACAGTAAGCATCTGGTCTCTAACATTTCCAAAACAGAACTCTGCATGAGGATCATTTTTCGAGTTGTATTTGAACATTATGATTACTTTCCTATTTTTCATTTCTTGTTTTTTTTTCTCCAAATTCTTCTAAGGATGACTTGTTTTAAAAAATGAATGAAGTTGTGCATTCAATAACGACAACATTAAGATTTTTAAATTACTCGATCACAATCTTTAATGGCTGAAAGTTGTGAGAATAGTTTTCTAATCTGCCCTGCTCGTGAGAGCTGGTATCTCAAAATCCCACTTCTTATATGTAAATAGGAAACTAAATAATTTAAATTTTTTGTTCTTTCAAACTTGACTTTGGAGCTGAGCTCTCTAGAAAAAACTAACTGAGATATCAGTTAGTCAAACATGTTTATACATTTTTTAAACGAAAAATTGCATACAATTTTGCAACTCAAGTAGAAAAAGCACAAAGCTCTTGCACTTTGATGGCGTACTTGATCTTTGTTAAAGTTGGATAAGGAAGATAGCCGACTTTCTGCTTTCTCTATTACAGCTTGAGTTTATTGCCTTTATGATTCCCATAAGAATTACCATGGCGTTTCTGAAAAGCACTGTTAATGCGCCATTTTGGGTACTGAAAGTTGGCTTAAATGGTGTTAGCTTCACCTTTCCATTTTAGGTACTTCAGTAAAGAAATCGGCGAAGTCCCTTCTGTATGAGATATGCACTGCAAATCACTGGAAGCCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGTCCAAGCCACGCAAAAAAGTAA

mRNA sequence

ATTTTGCTCTGTGAAATTGATGTTTCAGACAGTACACTACAGAGAGATCGTCGGAGAAGAGCCGAAGAATCGAGAAAATCAGATGGAGAACACTCCTTCCTGTCCTCGAAGTGTGAATGTCAATCTCAAAAATCTTCCTCCAATTCATAATCCGTGTGTTGGAAATGCAAATCACTCCTCGATTCCGGCTAAATTTGAGAAATCGAGGTATATTGGGCGCGTTCCTCAGTTTATGCCACCTAATCACTCGCCGGATATAAGGCCGAACGAATATGATGGCGTGCCGATGAACCCGGCGTGTTTTGATTCTGCTCGTTCTCCTAATGCAAGGACGACTCCGGAGGAAAGGAAAGAGAATTTCGGGGATTCAGCTTCGAGGTCCAGTGGTTGCAGTCATGACTCGACCAAAGAAGGTACCGGTACTTCAGTAAAGAAATCGGCGAAGTCCCTTCTGTATGAGATATGCACTGCAAATCACTGGAAGCCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGTCCAAGCCACGCAAAAAAGTAA

Coding sequence (CDS)

ATGTTTCAGACAGTACACTACAGAGAGATCGTCGGAGAAGAGCCGAAGAATCGAGAAAATCAGATGGAGAACACTCCTTCCTGTCCTCGAAGTGTGAATGTCAATCTCAAAAATCTTCCTCCAATTCATAATCCGTGTGTTGGAAATGCAAATCACTCCTCGATTCCGGCTAAATTTGAGAAATCGAGGTATATTGGGCGCGTTCCTCAGTTTATGCCACCTAATCACTCGCCGGATATAAGGCCGAACGAATATGATGGCGTGCCGATGAACCCGGCGTGTTTTGATTCTGCTCGTTCTCCTAATGCAAGGACGACTCCGGAGGAAAGGAAAGAGAATTTCGGGGATTCAGCTTCGAGGTCCAGTGGTTGCAGTCATGACTCGACCAAAGAAGGTACCGGTACTTCAGTAAAGAAATCGGCGAAGTCCCTTCTGTATGAGATATGCACTGCAAATCACTGGAAGCCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGTCCAAGCCACGCAAAAAAGTAA

Protein sequence

MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

Homology

[Close]

BLAST of Carg06517 vs. NCBI nr
Match: XP_022956286.1 (ribonuclease 3-like protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.6e-92
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFE 60
           MFQTVHYREIVGEE KNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFE
Sbjct: 1   MFQTVHYREIVGEERKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFE 60

Query: 61  KSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASR 120
           KSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARSPNARTTP+ERKENFGDSASR
Sbjct: 61  KSRYIGRVPQFMPPNHSPDVRPNEYDGVPMNPACFDSARSPNARTTPKERKENFGDSASR 120

Query: 121 SSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           SSGCSHDSTKE  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Sbjct: 121 SSGCSHDSTKE--GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 170

[Close]

BLAST of Carg06517 vs. NCBI nr
Match: XP_022956287.1 (ribonuclease 3-like protein 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 1.1e-90
Identity = 164/172 (95.35%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFE 60
           MFQTVHYREIVGEE KNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFE
Sbjct: 1   MFQTVHYREIVGEERKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFE 60

Query: 61  KSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASR 120
           KSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARSPNARTTP+ERKENFGDSASR
Sbjct: 61  KSRYIGRVPQFMPPNHSPDVRPNEYDGVPMNPACFDSARSPNARTTPKERKENFGDSASR 120

Query: 121 SSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           SSGCSHDSTKE     VKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Sbjct: 121 SSGCSHDSTKE-----VKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 167

[Close]

BLAST of Carg06517 vs. NCBI nr
Match: XP_022956288.1 (ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata] >XP_022956289.1 ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata] >XP_022956290.1 ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 22  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR 81
           MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+R
Sbjct: 1   MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDVR 60

Query: 82  PNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSA 141
           PNEYDGVPMNPACFDSARSPNARTTP+ERKENFGDSASRSSGCSHDSTKE  GTSVKKSA
Sbjct: 61  PNEYDGVPMNPACFDSARSPNARTTPKERKENFGDSASRSSGCSHDSTKE--GTSVKKSA 120

Query: 142 KSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           KSLLYEICTANHWKPPLFECCEEEGPSHAKK
Sbjct: 121 KSLLYEICTANHWKPPLFECCEEEGPSHAKK 149

[Close]

BLAST of Carg06517 vs. NCBI nr
Match: XP_023528856.1 (endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023528857.1 endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023528858.1 endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.9 bits (777), Expect = 3.4e-79
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 22  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR 81
           MENTPSCPRSVNVNLKNLPPIHNPC GNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR
Sbjct: 1   MENTPSCPRSVNVNLKNLPPIHNPCTGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR 60

Query: 82  PNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSA 141
           PNEYDG+P+N ACFDSARSPNARTTPEERKENFGDSASRSSGCSHDSTKE  GTSVKKSA
Sbjct: 61  PNEYDGLPLNTACFDSARSPNARTTPEERKENFGDSASRSSGCSHDSTKE--GTSVKKSA 120

Query: 142 KSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           KSLLYEICTANHWKPPLFECCEEEGPSHAKK
Sbjct: 121 KSLLYEICTANHWKPPLFECCEEEGPSHAKK 149

[Close]

BLAST of Carg06517 vs. NCBI nr
Match: XP_022980075.1 (ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima] >XP_022980076.1 ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima] >XP_022980077.1 ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 293.5 bits (750), Expect = 4.7e-76
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 22  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR 81
           MENTPSCPRSVNVNLKNLPPIHNPC G ANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+R
Sbjct: 1   MENTPSCPRSVNVNLKNLPPIHNPCTGKANHSSIPAKFEKSRYIGRVPQFMPPNHSPDLR 60

Query: 82  PNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSA 141
           PNEYDG+PM PACFDSARSPNARTTPEERKENFGDSA RSSG SHDSTKE  GTSVKKSA
Sbjct: 61  PNEYDGLPMIPACFDSARSPNARTTPEERKENFGDSAPRSSGRSHDSTKE--GTSVKKSA 120

Query: 142 KSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           KSLLYEICT NHWKPPLFECCEEEGPSHAKK
Sbjct: 121 KSLLYEICTTNHWKPPLFECCEEEGPSHAKK 149

[Close]

BLAST of Carg06517 vs. TAIR10
Match: AT5G20320.1 (dicer-like 4)

HSP 1 Score: 60.8 bits (146), Expect = 9.2e-10
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 134  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
            G    K+AKSLL+E C AN WKPP FECCEEEGP H K
Sbjct: 1615 GGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLK 1652

[Close]

BLAST of Carg06517 vs. TAIR10
Match: AT1G80650.1 (RNAse THREE-like protein 1)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 17/43 (39.53%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 129 TKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
           +K+    + + SAKS+L+E+C +  W+PP++ECC  +GP H +
Sbjct: 103 SKDDESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLR 145

[Close]

BLAST of Carg06517 vs. TAIR10
Match: AT4G00420.2 (Double-stranded RNA-binding domain (DsRBD)-containing protein)

HSP 1 Score: 41.2 bits (95), Expect = 7.6e-04
Identity = 18/34 (52.94%), Postives = 22/34 (64.71%), Query Frame = 0


Query: 138 KKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
           + SAKS LY +C+  HWK PL+E    EGP H K
Sbjct: 82  RSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMK 114

[Close]

BLAST of Carg06517 vs. Swiss-Prot
Match: sp|P84634|DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 134  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
            G    K+AKSLL+E C AN WKPP FECCEEEGP H K
Sbjct: 1615 GGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLK 1652

[Close]

BLAST of Carg06517 vs. Swiss-Prot
Match: sp|A7LFZ6|DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-08
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 134  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
            G  V K+A+S L+E+C AN+WKPP F+ C+EEGPSH +K
Sbjct: 1563 GDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRK 1601

[Close]

BLAST of Carg06517 vs. Swiss-Prot
Match: sp|Q9M8N2|RTL1_ARATH (Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.8e-05
Identity = 17/43 (39.53%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 129 TKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
           +K+    + + SAKS+L+E+C +  W+PP++ECC  +GP H +
Sbjct: 103 SKDDESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLR 145

[Close]

BLAST of Carg06517 vs. TrEMBL
Match: tr|A0A0A0KYI7|A0A0A0KYI7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.6e-51
Identity = 112/176 (63.64%), Postives = 130/176 (73.86%), Query Frame = 0


Query: 6   HYREIVGEEPKNRENQMENTPSC-PRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRY 65
           HY +IVG E KNR  QMEN PSC P  +N+NLKNLPPI+NP   + +HSSIPAKFEKSRY
Sbjct: 3   HYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKSRY 62

Query: 66  IGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTP--------EERKENFGD 125
           I RVPQFMP +H P+IR N+Y G+PM  A  DSAR+ N +T P          +K+   D
Sbjct: 63  IRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKD 122

Query: 126 SASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
            ASR S C HDSTKE  GT  K++AKSLL+EICTANHW+PPLFECCEEEGPSHAKK
Sbjct: 123 LASRCSCCRHDSTKE--GTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKK 176

[Close]

BLAST of Carg06517 vs. TrEMBL
Match: tr|A0A1S4DZP1|A0A1S4DZP1_CUCME (uncharacterized protein LOC103494682 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.2e-50
Identity = 112/177 (63.28%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 6   HYREIVGEEPKNRENQME-NTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRY 65
           HY EIVG E KNR  QME N PSCP  +N+NLKNLPPI+NP      HSSIPAKFEKSRY
Sbjct: 3   HYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKSRY 62

Query: 66  IGRVPQFMPPNHSPDIRPNEYDGVP-MNPACFDSARSPNARTTP--------EERKENFG 125
           I RVPQF+P +H P+IR N Y G+P M  AC DSAR+ N +T P         ++K+N  
Sbjct: 63  IRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDNCK 122

Query: 126 DSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           D ASR S C H STKE  GT  K++AKSLL+EICTANHW+PPLFECCEEEGPSHA+K
Sbjct: 123 DLASRCSCCRHGSTKE--GTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 177

[Close]

BLAST of Carg06517 vs. TrEMBL
Match: tr|A0A1S3BXK0|A0A1S3BXK0_CUCME (uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.2e-50
Identity = 112/177 (63.28%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 6   HYREIVGEEPKNRENQME-NTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRY 65
           HY EIVG E KNR  QME N PSCP  +N+NLKNLPPI+NP      HSSIPAKFEKSRY
Sbjct: 3   HYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKSRY 62

Query: 66  IGRVPQFMPPNHSPDIRPNEYDGVP-MNPACFDSARSPNARTTP--------EERKENFG 125
           I RVPQF+P +H P+IR N Y G+P M  AC DSAR+ N +T P         ++K+N  
Sbjct: 63  IRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDNCK 122

Query: 126 DSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK 173
           D ASR S C H STKE  GT  K++AKSLL+EICTANHW+PPLFECCEEEGPSHA+K
Sbjct: 123 DLASRCSCCRHGSTKE--GTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 177

[Close]

BLAST of Carg06517 vs. TrEMBL
Match: tr|A0A2I4GKA7|A0A2I4GKA7_9ROSI (ribonuclease 3-like protein 1 OS=Juglans regia OX=51240 GN=LOC109008618 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 62/156 (39.74%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 22  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR 81
           ME   S P    V+LK LPPI NP     +HS + ++  K+R +G+V   + P+    ++
Sbjct: 1   MEMNSSNPEKFFVDLKLLPPI-NPHASPTSHSQVNSRKPKTRALGKV---VKPSAKQGLK 60

Query: 82  PNEYDGVP--MNPACFDSARS----PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGT 141
             EYDG P   N A    A++     +A   P E +E   +      G      +   G 
Sbjct: 61  LVEYDGRPTKANQAYNIQAQNLMVEEDAFLCPRECREFTSNGVMGGRGNIAFQNESTDGA 120

Query: 142 SVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
           S K  AKS L+EIC AN+WKPPLFECC+EEGPSHAK
Sbjct: 121 SKKGLAKSNLFEICAANYWKPPLFECCKEEGPSHAK 152

[Close]

BLAST of Carg06517 vs. TrEMBL
Match: tr|A0A1S3U1P9|A0A1S3U1P9_VIGRR (ribonuclease 3-like protein 1 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760995 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 53/152 (34.87%), Postives = 73/152 (48.03%), Query Frame = 0


Query: 22  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIR 81
           MEN  S    + VNLKNLPPI +P    +  S+   K   S       + +     P +R
Sbjct: 1   MENNFSHTPKLAVNLKNLPPI-DPFQITSPSSNSKNKMNNSSCSRTAVKAV--KRKPSLR 60

Query: 82  PNEYDGVPMNPACFDSARSPNARTTP-EERKENFGDSASRSSGCSHDSTKEGTGTSVKK- 141
                      +  D  + P+   T   +   +   S  +S  C   +T   T   +KK 
Sbjct: 61  -------KFRASDKDIVKEPSLEMTKIADEGASSTSSNEKSESCGTSTTPSQTQEGMKKG 120

Query: 142 SAKSLLYEICTANHWKPPLFECCEEEGPSHAK 172
           +A+S LYEIC ANHWKPP+FECC+EEGPSH +
Sbjct: 121 TARSNLYEICAANHWKPPIFECCKEEGPSHER 142

The following BLAST results are available for this feature:

BLAST of Carg06517 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956286.1	1.6e-92	97.09	ribonuclease 3-like protein 1 isoform X1 [Cucurbita moschata]	[more]
XP_022956287.1	1.1e-90	95.35	ribonuclease 3-like protein 1 isoform X2 [Cucurbita moschata]	[more]
XP_022956288.1	1.1e-80	97.35	ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata] >XP_022956289.1 ri...	[more]
XP_023528856.1	3.4e-79	96.03	endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023528857...	[more]
XP_022980075.1	4.7e-76	93.38	ribonuclease 3-like protein 1 isoform X1 [Cucurbita maxima] >XP_022980076.1 ribo...	[more]

BLAST of Carg06517 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20320.1	9.2e-10	68.42	dicer-like 4	[more]
AT1G80650.1	2.1e-06	39.53	RNAse THREE-like protein 1	[more]
AT4G00420.2	7.6e-04	52.94	Double-stranded RNA-binding domain (DsRBD)-containing protein	[more]

BLAST of Carg06517 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P84634\|DCL4_ARATH	1.7e-08	68.42	Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2	[more]
sp\|A7LFZ6\|DCL4_ORYSJ	4.8e-08	58.97	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL...	[more]
sp\|Q9M8N2\|RTL1_ARATH	3.8e-05	39.53	Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1	[more]

BLAST of Carg06517 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYI7\|A0A0A0KYI7_CUCSA	2.6e-51	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 SV=1	[more]
tr\|A0A1S4DZP1\|A0A1S4DZP1_CUCME	2.2e-50	63.28	uncharacterized protein LOC103494682 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BXK0\|A0A1S3BXK0_CUCME	2.2e-50	63.28	uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4GKA7\|A0A2I4GKA7_9ROSI	2.0e-14	39.74	ribonuclease 3-like protein 1 OS=Juglans regia OX=51240 GN=LOC109008618 PE=4 SV=...	[more]
tr\|A0A1S3U1P9\|A0A1S3U1P9_VIGRR	3.2e-09	34.87	ribonuclease 3-like protein 1 isoform X2 OS=Vigna radiata var. radiata OX=3916 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06517-RA	Carg06517-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.160.20		coord: 134..172 e-value: 7.5E-10 score: 40.7
None	No IPR available	PFAM	PF14709	DND1_DSRM	coord: 139..171 e-value: 4.1E-6 score: 26.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..138
None	No IPR available	SUPERFAMILY	SSF54768	dsRNA-binding domain-like	coord: 139..171
IPR014720	Double-stranded RNA-binding domain	CDD	cd00048	DSRM	coord: 141..172 e-value: 5.52049E-8 score: 45.7263

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06517	Cp4.1LG03g13530	Cucurbita pepo (Zucchini)	carcpeB0177
Carg06517	Bhi01G002785	Wax gourd	carwgoB0139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06517	Silver-seed gourd	carcarB138
Carg06517	Cucurbita moschata (Rifu)	carcmoB0163
Carg06517	Silver-seed gourd	carcarB139
Carg06517	Cucumber (Gy14) v2	carcgybB0127
Carg06517	Cucumber (Gy14) v1	carcgyB0141
Carg06517	Cucurbita maxima (Rimu)	carcmaB0154
Carg06517	Cucurbita maxima (Rimu)	carcmaB0157
Carg06517	Cucurbita moschata (Rifu)	carcmoB0166
Carg06517	Cucurbita pepo (Zucchini)	carcpeB0173
Carg06517	Cucurbita pepo (Zucchini)	carcpeB0175
Carg06517	Cucurbita pepo (Zucchini)	carcpeB0176
Carg06517	Wild cucumber (PI 183967)	carcpiB0133
Carg06517	Wild cucumber (PI 183967)	carcpiB0135
Carg06517	Cucumber (Chinese Long) v2	carcuB0128
Carg06517	Cucumber (Chinese Long) v2	carcuB0130
Carg06517	Cucumber (Chinese Long) v3	carcucB0137
Carg06517	Cucumber (Chinese Long) v3	carcucB0139
Carg06517	Bottle gourd (USVL1VR-Ls)	carlsiB106
Carg06517	Bottle gourd (USVL1VR-Ls)	carlsiB109
Carg06517	Melon (DHL92) v3.5.1	carmeB0121
Carg06517	Melon (DHL92) v3.5.1	carmeB0127
Carg06517	Melon (DHL92) v3.6.1	carmedB0124
Carg06517	Melon (DHL92) v3.6.1	carmedB0131
Carg06517	Watermelon (Charleston Gray)	carwcgB0117
Carg06517	Watermelon (Charleston Gray)	carwcgB0121
Carg06517	Watermelon (97103) v1	carwmB0117
Carg06517	Watermelon (97103) v1	carwmB0120
Carg06517	Watermelon (97103) v2	carwmbB0126
Carg06517	Watermelon (97103) v2	carwmbB0127
Carg06517	Wax gourd	carwgoB0150