Carg06440 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGGGAGTCGAATCCTTATCTTTATGGATACGAAGAAAGGATGTGATCAAATTACCCGACAGCTTCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGTGATAAGAGTCAAGCAGAAAGGGACTGGGTTCTCTCAGAATTTAGGTCTGGCAAGAGTCCTATAATGACGGCTACAGATGTTGCTGCACGTGGTTTAGGTATGTCTTGTATATGACAATTGTTAGGTATGACATTTTACAGTAGTCATTGAAGATCTGCTCATGCATTTATTTTGAGAAGAAACAGAAATTTCATTCGGAACAATAAGAGCTAAAGACAAGGGACTGAACAAAACTACCCTGAACTTACGACAATGATCCCAATTATCTGCAATCAGAAGCAGAGTATATCTCAAAATAACGAAGAAGTTGAAAACCTGAATGGAAGTGATGAACAACCTAACACTCGGGAATGTGTGCCTTTACCGATCGGACCAAATATCTTGCTGAATATCCATTACGTCCAAATCCCACTATAACTTTGTTTTATGGGTGACTTCGAGAAGATAGAAAATGGTCCACAAGGAGAGGGGACAGTACAATATTTTAATAATTGGCTATGGCCCTCAACCACATGGATATTAAGTATGAATCATTATAGACTCATCAAGGAAGAGGGAAAATGAAACAAACCTATGGATGAAGCCGATGTGTATAGATTTCCCTAGGAGCTGCTTAGTTAGTACATCTTCTTCACCACCTTCATTTTCACAATCTTGAATAGAAAAAGGAAAAAAAGGCATTTAGATGTAGAAAAAAAAGCAAGAAGAAGGGCAGGAGAATATCCCAAAAGGGTGTAAAACAAATAGCCAGATGCCAGGACAAGATAGCAGTAGCATGGGAATCTATAAACCAGATGAAAGTAAGGGTAAGAGAATGAAAAATTGAAATTTACCCAATCCAATAAATCATCTCAAAAGGTGAAAACACATAAGCAATTCATACCCAACAAAGAACTTGATAAAATACGAGAACTTGGGTTGTGGGTAACCTACCAGATGCATCATCTCCTTTCTTGTTTTGTATATGTTGTTCATTAAGTTTGCTCTGTATGAATGGAAAAGAATATACTTATTAGTAAAGGGCTAAAAGCTTCCAACCCTATAGGATGGCATGGACCAGAATGCATTTGAATAGTATAAGGCACTGGCTGTTGTGTCTCTTAAATTTGTAGCTTCAGCTTTTGATGAACTTCTACTGCTTTCTATAGTATTTCTTATAATGTCATTTGATTGCAGACGTGAAGGACGTGAAATATGTTATAAATTATGATTTTCCTGGATCTCTCGAGGATTATGTTCACCGAATTGGTAGAACAGGAAGAGCTGGAGCCAAAGGAACTGCATACACTTTCTTCACCGCTGCTAATGCCAGATTTGCAAAAGAACTTATAGCGATTCTTGAAGAAGCTGGACAGAAGGTAAGTCCTGAACTGGCAGCAATGGGGCGTGGTGCACCTCCTCCTCCCTCAGGTTAGTTTTCTCCAAGGAAGTGTAATCGTGTTCTAGTTCCTATTACTGTCAATACTTCCAGAAATCAATACCAAGGATAAAAGAAAAATAATCTAGAAGCTTGGTCCATACTTGTATTTCTCTGGTGCATGCTCGTTAGAGTTCACAATGAATGTTCTTGAGTTTATCAACATTTCATCTGTATGTTGATCAGGTCATGGGGGATTCCGAGATCGTGGAAGGGGCTATGGTGGAGGACGATGATGGAGTTGATTTCCTAAACCTGATGACTTCAGACAATTATTACTCTGCAAGCATGTTTGATATCGGCTACATGCACTGTTGCCATTGGAAAAGTAGGTATGCTCAATATTACCAGTTAACCCTTTGAACAGATCCATCTACTGCCGCTCTACTAACACATGACAGGAAGAAGGTGAAAGTTCATGGGATTTTGATGTACAAGAAAGAGTTTCATTTTTTTTTTTCTCAAAAGAAAAATATTCAAGTCGATGTGTATTAAGTAGACAAAATTTCAAATATGCTGCAGTACTGTACTTACGATATTTCTAGTGTGTTAGAAAGTAAATTTCCCAAGTATTTCTGACCTCTCTATGTGACATTGTCAAAGATCTAACAGGGGATAGTATCTTTTATCATTAAGAAAAAGGCAAGAGCTGCCAAAACTGAGGAAACAGCTTAGCTGTAACCCAACATAATCAGTCTCTTATTTACTCTCAAACACACTTTGAAAGAGAGAAATTATGATAAACGTGAAGAAAGATAAGAGATAGACATGAGAGCAGGGCCTGTCTGATGCGTGAACTTCTGGTTTCAATGAACTAAAGCTCTGTATTTGGTTGACAAAACATGAATTTGGTCTCCTAAATTCATCATTTTTGTCCGCTTGGAACGCCTGAGGTGAGGTAACATCTCTGTTCACGCCAGTTTCTCCTTGCATATTGTTTTAAATTTTTAGTCAGTTCAAAAGTTTTCTGCTAGTTACGTCTAGGCGTATACCTTTATTACGTATCATGGGATATGATGAATAAAATATAGAAGATTTGACTTGAAAAAGTAGCAGCATCGTGTTTATTGAAGAGAAACCAAAAGCAAAGGAGATATTATATTTAGGAGGAAACTTAGTCTG ATGGATGGGAGTCGAATCCTTATCTTTATGGATACGAAGAAAGGATGTGATCAAATTACCCGACAGCTTCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGTGATAAGAGTCAAGCAGAAAGGGACTGGGTTCTCTCAGAATTTAGGTCTGGCAAGAGTCCTATAATGACGGCTACAGATGTTGCTGCACGTGGTTTAGACGTGAAGGACGTGAAATATGTTATAAATTATGATTTTCCTGGATCTCTCGAGGATTATGTTCACCGAATTGGTAGAACAGGAAGAGCTGGAGCCAAAGGAACTGCATACACTTTCTTCACCGCTGCTAATGCCAGATTTGCAAAAGAACTTATAGCGATTCTTGAAGAAGCTGGACAGAAGGTAAGTCCTGAACTGGCAGCAATGGGGCGTGGTGCACCTCCTCCTCCCTCAGGTCATGGGGGATTCCGAGATCGTGGAAGGGGCTATGGTGGAGGACGATGATGGAGTTGATTTCCTAAACCTGATGACTTCAGACAATTATTACTCTGCAAGCATGTTTGATATCGGCTACATGCACTGTTGCCATTGGAAAAGTAGGTATGCTCAATATTACCAGTTAACCCTTTGAACAGATCCATCTACTGCCGCTCTACTAACACATGACAGGAAGAAGGTGAAAGTTCATGGGATTTTGATGTACAAGAAAGAGTTTCATTTTTTTTTTTCTCAAAAGAAAAATATTCAAGTCGATGTGTATTAAGTAGACAAAATTTCAAATATGCTGCAGTACTGTACTTACGATATTTCTAGTGTGTTAGAAAGTAAATTTCCCAAGTATTTCTGACCTCTCTATGTGACATTGTCAAAGATCTAACAGGGGATAGTATCTTTTATCATTAAGAAAAAGGCAAGAGCTGCCAAAACTGAGGAAACAGCTTAGCTGTAACCCAACATAATCAGTCTCTTATTTACTCTCAAACACACTTTGAAAGAGAGAAATTATGATAAACGTGAAGAAAGATAAGAGATAGACATGAGAGCAGGGCCTGTCTGATGCGTGAACTTCTGGTTTCAATGAACTAAAGCTCTGTATTTGGTTGACAAAACATGAATTTGGTCTCCTAAATTCATCATTTTTGTCCGCTTGGAACGCCTGAGGTGAGGTAACATCTCTGTTCACGCCAGTTTCTCCTTGCATATTGTTTTAAATTTTTAGTCAGTTCAAAAGTTTTCTGCTAGTTACGTCTAGGCGTATACCTTTATTACGTATCATGGGATATGATGAATAAAATATAGAAGATTTGACTTGAAAAAGTAGCAGCATCGTGTTTATTGAAGAGAAACCAAAAGCAAAGGAGATATTATATTTAGGAGGAAACTTAGTCTG ATGGATGGGAGTCGAATCCTTATCTTTATGGATACGAAGAAAGGATGTGATCAAATTACCCGACAGCTTCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGTGATAAGAGTCAAGCAGAAAGGGACTGGGTTCTCTCAGAATTTAGGTCTGGCAAGAGTCCTATAATGACGGCTACAGATGTTGCTGCACGTGGTTTAGACGTGAAGGACGTGAAATATGTTATAAATTATGATTTTCCTGGATCTCTCGAGGATTATGTTCACCGAATTGGTAGAACAGGAAGAGCTGGAGCCAAAGGAACTGCATACACTTTCTTCACCGCTGCTAATGCCAGATTTGCAAAAGAACTTATAGCGATTCTTGAAGAAGCTGGACAGAAGGTAAGTCCTGAACTGGCAGCAATGGGGCGTGGTGCACCTCCTCCTCCCTCAGGTCATGGGGGATTCCGAGATCGTGGAAGGGGCTATGGTGGAGGACGATGA MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPPPSGHGGFRDRGRGYGGGR
BLAST of Carg06440 vs. NCBI nr
Match: XP_022956332.1 (DEAD-box ATP-dependent RNA helicase 20 [Cucurbita moschata]) HSP 1 Score: 287.0 bits (733), Expect = 4.1e-74 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg06440 vs. NCBI nr
Match: XP_022980599.1 (DEAD-box ATP-dependent RNA helicase 20 [Cucurbita maxima]) HSP 1 Score: 287.0 bits (733), Expect = 4.1e-74 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg06440 vs. NCBI nr
Match: XP_023528151.1 (DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 287.0 bits (733), Expect = 4.1e-74 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg06440 vs. NCBI nr
Match: XP_004146825.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Cucumis sativus] >KGN59824.1 hypothetical protein Csa_3G848820 [Cucumis sativus]) HSP 1 Score: 285.4 bits (729), Expect = 1.2e-73 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg06440 vs. NCBI nr
Match: XP_008447604.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Cucumis melo]) HSP 1 Score: 285.4 bits (729), Expect = 1.2e-73 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg06440 vs. TAIR10
Match: AT1G55150.1 (DEA(D/H)-box RNA helicase family protein) HSP 1 Score: 251.9 bits (642), Expect = 2.6e-67 Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0
BLAST of Carg06440 vs. TAIR10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 193.7 bits (491), Expect = 8.5e-50 Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = 0
BLAST of Carg06440 vs. TAIR10
Match: AT3G01540.2 (DEAD box RNA helicase 1) HSP 1 Score: 139.0 bits (349), Expect = 2.5e-33 Identity = 79/163 (48.47%), Postives = 102/163 (62.58%), Query Frame = 0
BLAST of Carg06440 vs. TAIR10
Match: AT5G14610.1 (DEAD box RNA helicase family protein) HSP 1 Score: 138.3 bits (347), Expect = 4.2e-33 Identity = 79/159 (49.69%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of Carg06440 vs. TAIR10
Match: AT3G06480.1 (DEAD box RNA helicase family protein) HSP 1 Score: 127.9 bits (320), Expect = 5.7e-30 Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 0
BLAST of Carg06440 vs. Swiss-Prot
Match: sp|Q5QMN3|RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 254.6 bits (649), Expect = 7.3e-67 Identity = 149/161 (92.55%), Postives = 151/161 (93.79%), Query Frame = 0
BLAST of Carg06440 vs. Swiss-Prot
Match: sp|Q9C718|RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana OX=3702 GN=RH20 PE=2 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 4.8e-66 Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0
BLAST of Carg06440 vs. Swiss-Prot
Match: sp|Q8W4R3|RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 PE=1 SV=2) HSP 1 Score: 193.7 bits (491), Expect = 1.5e-48 Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = 0
BLAST of Carg06440 vs. Swiss-Prot
Match: sp|Q5N7W4|RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 SV=2) HSP 1 Score: 191.4 bits (485), Expect = 7.6e-48 Identity = 116/161 (72.05%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of Carg06440 vs. Swiss-Prot
Match: sp|Q92841|DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2) HSP 1 Score: 166.0 bits (419), Expect = 3.4e-40 Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 0
BLAST of Carg06440 vs. TrEMBL
Match: tr|A0A1S3BHT9|A0A1S3BHT9_CUCME (DEAD-box ATP-dependent RNA helicase 20 OS=Cucumis melo OX=3656 GN=LOC103490017 PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 7.8e-74 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg06440 vs. TrEMBL
Match: tr|A0A0A0LFT6|A0A0A0LFT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848820 PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 7.8e-74 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg06440 vs. TrEMBL
Match: tr|A0A2C9UXY0|A0A2C9UXY0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G027000 PE=3 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 3.9e-73 Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg06440 vs. TrEMBL
Match: tr|A0A0B0PIE4|A0A0B0PIE4_GOSAR (DEAD-box ATP-dependent RNA helicase 20-like protein OS=Gossypium arboreum OX=29729 GN=F383_00152 PE=3 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72 Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg06440 vs. TrEMBL
Match: tr|A0A2P5VVY5|A0A2P5VVY5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37719 PE=3 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72 Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |