Carg06371 (gene) Silver-seed gourd

Overview
NameCarg06371
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMethionine aminopeptidase
LocationCucurbita_argyrosperma_scaffold_016 : 1246266 .. 1248752 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGTATTAGTTAAAGTTAGCAATTCATATTTTGTAGCCGGCGGCGGAAGAGGAGGTAAGAGGATTCGTTTCTGTTAGTGGTTCGATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCACGATGCGGCAAACCTTCCCATCTTCAGTATGTGTTTTCAACTTTCTTTTCAAGTTTTCAGTAGCCGTGCTAGTTCGCATGTTATCTTTGGTTCTTGAATGTCGATGGAATTTGAGTTGTTTTGCGTTTCTTTGAAATTGGATGGATTTTTAGTCGCTTAGTTTGGGCGTGCGAGTTGTGAATTGAGAATCAGTCAATGGAACTTGGAAGATAGTTAGTGCCTTTGGAAGTTTATTGTTGTTTTTCTTTTTGTGGCTTCTTGGGCGAAATCTGAATCTAAGAATGATATGAAAGAAGCTGAAAGTAATGGTTTAGTGGTTTTTTTTCCTAGTGATTTTGGTGGAATTTGATTGCCGATATGCTGAATCGGTAGGGGCTTCCGGCCATGATATTCCGAACTTGAATCTTTTTGTTGGCTTGGTACTTGCTTTGCAAGTTTAGAACCAATGGGTGGTTGGAGCGCTTTTGTGTCGGTTCTCTTTGTGACTTTTTTCTTTCTGGAGGGCAATGATTCATTAGTTTAAAACTAATGAGCAGTGTTTTTAAAGCCTTATATCAAGAACTTTACTTGGGAAGTTATAGGATTGTTTTCCAAGAAATTTTGGTGGATTATGATAATCATTGGCAATTGGTGATTTTGATGGTGTTCTCTTATATCTTTTTCTGTAATTGTACTCTATTCAATGTTTGTGCCAATCAATGGTTTGAAAGGCTAAAAGCGGTTTTCTGGTTGTTCCTTTGAAGAAGCAGGGCACAAGCTTCAATTTAAAATACAGAGAACTTTGATAAAAATCATAGAAATGTATATTAAGTAGTATTGATTAGGGTAGATTTATTTTCTTAATATTTGTCATCAATATTTCTTTAGGCCTTGTGGGTAAAGTAAAATATTGGGCTAAAATTTCAATTTGTGGTGTGTTGTTGTTAAATACGTAAGCAAGCTTTTATATTTCTGAAGAATATGACTAATTGATATTGTTCTTCCTGAGACTTTATGACGTAATGTGTCTTGGGGAGGCAAGGCATAACCGCTTTTGATCCAAAAAAGGCATCAGACTCATGATTAAAAATTAGATTATGGTTAATGCACTTTTTCATGTAAGCTCCTGGGTTATTTTGAGGATCTCCTGGTTTTCCTTTATTATTATTATTCTTACTTTTATTATTATTTTTTTAATAAAAATTGTTTCTTAAAAAAATGAAAACTAATGAATGCTTGATTTTGACTCTGTTTTGGATCAAGTGAAGTATAAATGGATGATGAGAAATCAATTTAAAGCCAAGGGGATTTTTACTAATTCTCTACTTGGCTTAAATAAAAAAGAATTATGGTTAAAATAATGCGAATGGCTTTATAAGGAAGCTGTAAGAACTTTATATCCAAGACATCCTCACACTTCTGAATTTGAAAATTTTATTGGTTTCTTTCTCATTAAACTCACCTGAAAAGGCATTTAACTGCATTGTTTCATAGCACCTTTCTCTTTGGCTTGAAGGGATTTCCAACCAAAGATTGCTTCGAACCATGTTGAACTTGGATATGGGCTGATCAGTAGACAGCAAAAGTGTCAAGTGAAAGCCACCACAGCTTTTGGGTCTTAATAGTACTTCAAAAGCAAATGGCATTTCATTAATGGGTTCTATCATCTGGTGATTGATAATTAGTCCGACTAAACAGTGTGTATCCTAGAAGTGTGATAGTAGCAATAATGACAGTGTAGGGTTTGTGTTTCAGAGTGTAATTCAATGATAAATTTGTTGTTTGGAATTATTTGAGACCCGTTCTTTAGGGATACTCTGTTTGATTTGTTTGTTTTTAAGGTTGTAGTTCACATATTATTATTATTATTATGTTTTTTATTTTTTATTTTTTAGTTCTGCAGTCAACATATTCCTTGAGAACCATTTGTACTTTTTATTAATTCCTTTTTTTTTTCCCTAATCAACTTATCTTATTTTTAGGTGTCCAAAGTGTATGGAACTGAAGCTTCCTCGGGAGGGTGCTGCTTTTTGGTCTGTAATCATTTCCAATTACTTCTAGATGTTTATTGGATATTAGTTAAATCAATCGTATAAGTTAACCTTTTATTCCATTTTTTTCTTAAAAACATTGTTTGTGAACATGTAATATGATGTGAGTCGAGGAAACCATTACTGGAAGTTTTTACATTCACGTTCTGTCAGGTTGAGAACTTGTGAATTCGAAGTTTGACACGTATTTGGGCATATATAAGAACCTCCACATGTAATTGTATAACATTCAGAACTTAAACATTACAGTTTCTTATGCATCAAGACTTTTTGTGTTTATTTAGTGTACTGCAGGGTATTGATTCATCTATATTGGAAAACTAA

mRNA sequence

TTCGTATTAGTTAAAGTTAGCAATTCATATTTTGTAGCCGGCGGCGGAAGAGGAGGTAAGAGGATTCGTTTCTGTTAGTGGTTCGATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCACGATGCGGCAAACCTTCCCATCTTCAGGATTTCCAACCAAAGATTGCTTCGAACCATGTTGAACTTGGATATGGGCTGATCAGTAGACAGCAAAAGTGTCAAGTGAAAGCCACCACAGCTTTTGGTTCTGCAGTCAACATATTCCTTGAGAACCATTTGTGTCCAAAGTGTATGGAACTGAAGCTTCCTCGGGAGGGTGCTGCTTTTTGGTCTGGTATTGATTCATCTATATTGGAAAACTAA

Coding sequence (CDS)

ATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCACGATGCGGCAAACCTTCCCATCTTCAGGATTTCCAACCAAAGATTGCTTCGAACCATGTTGAACTTGGATATGGGCTGATCAGTAGACAGCAAAAGTGTCAAGTGAAAGCCACCACAGCTTTTGGTTCTGCAGTCAACATATTCCTTGAGAACCATTTGTGTCCAAAGTGTATGGAACTGAAGCTTCCTCGGGAGGGTGCTGCTTTTTGGTCTGGTATTGATTCATCTATATTGGAAAACTAA

Protein sequence

MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSAVNIFLENHLCPKCMELKLPREGAAFWSGIDSSILEN
Homology
[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_022946479.1 (methionine aminopeptidase 1A [Cucurbita moschata] >XP_023540382.1 methionine aminopeptidase 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_022974140.1 (methionine aminopeptidase 1A [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_008438188.1 (PREDICTED: methionine aminopeptidase 1A [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 6.7e-08
Identity = 39/87 (44.83%), Postives = 40/87 (45.98%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSD AE VTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDTAETVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCM+LKLPREGAAF S
Sbjct: 61 ---------CPKCMDLKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_022147078.1 (methionine aminopeptidase 1A [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 38/85 (44.71%), Postives = 39/85 (45.88%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAE VTL+C RCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAETVTLSCVRCGKPSHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKCMELKLPREGAAF
Sbjct: 61 ---------CPKCMELKLPREGAAF 41

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_004133928.1 (PREDICTED: methionine aminopeptidase 1A isoform X1 [Cucumis sativus] >KGN56614.1 hypothetical protein Csa_3G126780 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 38/87 (43.68%), Postives = 39/87 (44.83%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSD AE VTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDTAETVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCM+LKLPRE AAF S
Sbjct: 61 ---------CPKCMDLKLPRENAAFCS 43

[Close]
BLAST of Carg06371 vs. TAIR10
Match: AT2G45240.1 (methionine aminopeptidase 1A)

HSP 1 Score: 44.7 bits (104), Expect = 3.8e-05
Identity = 28/85 (32.94%), Postives = 34/85 (40.00%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MA  SDA+   TL+CARC KP+HLQ                                   
Sbjct: 1  MASESDASSIATLSCARCEKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKC++LKLPRE A+F
Sbjct: 61 ---------CPKCIDLKLPREQASF 41

[Close]
BLAST of Carg06371 vs. Swiss-Prot
Match: sp|Q9SLN5|MAP1A_ARATH (Methionine aminopeptidase 1A OS=Arabidopsis thaliana OX=3702 GN=MAP1A PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.9e-04
Identity = 28/85 (32.94%), Postives = 34/85 (40.00%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MA  SDA+   TL+CARC KP+HLQ                                   
Sbjct: 1  MASESDASSIATLSCARCEKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKC++LKLPRE A+F
Sbjct: 61 ---------CPKCIDLKLPREQASF 41

[Close]
BLAST of Carg06371 vs. TrEMBL
Match: tr|A0A1S3AWF4|A0A1S3AWF4_CUCME (Methionine aminopeptidase OS=Cucumis melo OX=3656 GN=LOC103483368 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 39/87 (44.83%), Postives = 40/87 (45.98%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSD AE VTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDTAETVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCM+LKLPREGAAF S
Sbjct: 61 ---------CPKCMDLKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. TrEMBL
Match: tr|A0A0A0L6G2|A0A0A0L6G2_CUCSA (Methionine aminopeptidase OS=Cucumis sativus OX=3659 GN=Csa_3G126780 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 38/87 (43.68%), Postives = 39/87 (44.83%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSD AE VTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDTAETVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCM+LKLPRE AAF S
Sbjct: 61 ---------CPKCMDLKLPRENAAFCS 43

[Close]
BLAST of Carg06371 vs. TrEMBL
Match: tr|A0A067HD05|A0A067HD05_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0158382mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 35/85 (41.18%), Postives = 38/85 (44.71%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAE  +L+C RCGKP+HLQ                                   
Sbjct: 1  MAGGSDAAETTSLSCVRCGKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKCMELKLPREGAAF
Sbjct: 61 ---------CPKCMELKLPREGAAF 41

[Close]
BLAST of Carg06371 vs. TrEMBL
Match: tr|V4U8K9|V4U8K9_9ROSI (Methionine aminopeptidase OS=Citrus clementina OX=85681 GN=CICLE_v10020473mg PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 35/85 (41.18%), Postives = 38/85 (44.71%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAE  +L+C RCGKP+HLQ                                   
Sbjct: 1  MAGGSDAAETTSLSCVRCGKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKCMELKLPREGAAF
Sbjct: 61 ---------CPKCMELKLPREGAAF 41

[Close]
BLAST of Carg06371 vs. TrEMBL
Match: tr|V4U382|V4U382_9ROSI (Methionine aminopeptidase OS=Citrus clementina OX=85681 GN=CICLE_v10020473mg PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 35/85 (41.18%), Postives = 38/85 (44.71%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAE  +L+C RCGKP+HLQ                                   
Sbjct: 1  MAGGSDAAETTSLSCVRCGKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKCMELKLPREGAAF
Sbjct: 61 ---------CPKCMELKLPREGAAF 41

The following BLAST results are available for this feature:
BLAST of Carg06371 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022946479.13.6e-0948.28methionine aminopeptidase 1A [Cucurbita moschata] >XP_023540382.1 methionine ami... [more]
XP_022974140.13.6e-0948.28methionine aminopeptidase 1A [Cucurbita maxima][more]
XP_008438188.16.7e-0844.83PREDICTED: methionine aminopeptidase 1A [Cucumis melo][more]
XP_022147078.12.0e-0744.71methionine aminopeptidase 1A [Momordica charantia][more]
XP_004133928.13.3e-0743.68PREDICTED: methionine aminopeptidase 1A isoform X1 [Cucumis sativus] >KGN56614.1... [more]
BLAST of Carg06371 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45240.13.8e-0532.94methionine aminopeptidase 1A[more]
BLAST of Carg06371 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SLN5|MAP1A_ARATH6.9e-0432.94Methionine aminopeptidase 1A OS=Arabidopsis thaliana OX=3702 GN=MAP1A PE=1 SV=1[more]
BLAST of Carg06371 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWF4|A0A1S3AWF4_CUCME4.5e-0844.83Methionine aminopeptidase OS=Cucumis melo OX=3656 GN=LOC103483368 PE=3 SV=1[more]
tr|A0A0A0L6G2|A0A0A0L6G2_CUCSA2.2e-0743.68Methionine aminopeptidase OS=Cucumis sativus OX=3659 GN=Csa_3G126780 PE=3 SV=1[more]
tr|A0A067HD05|A0A067HD05_CITSI2.4e-0641.18Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0158382... [more]
tr|V4U8K9|V4U8K9_9ROSI2.4e-0641.18Methionine aminopeptidase OS=Citrus clementina OX=85681 GN=CICLE_v10020473mg PE=... [more]
tr|V4U382|V4U382_9ROSI2.4e-0641.18Methionine aminopeptidase OS=Citrus clementina OX=85681 GN=CICLE_v10020473mg PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06371-RACarg06371-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06371Cucurbita pepo (Zucchini)carcpeB1328
Carg06371Cucurbita pepo (Zucchini)carcpeB1331
Carg06371Cucurbita pepo (Zucchini)carcpeB1333
Carg06371Wild cucumber (PI 183967)carcpiB0998
Carg06371Wild cucumber (PI 183967)carcpiB0999
Carg06371Cucumber (Chinese Long) v2carcuB0975
Carg06371Cucumber (Chinese Long) v2carcuB0976
Carg06371Cucumber (Chinese Long) v3carcucB1003
Carg06371Cucumber (Chinese Long) v3carcucB1004
Carg06371Bottle gourd (USVL1VR-Ls)carlsiB875
Carg06371Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06371Melon (DHL92) v3.5.1carmeB0938
Carg06371Melon (DHL92) v3.5.1carmeB0941
Carg06371Melon (DHL92) v3.6.1carmedB0944
Carg06371Melon (DHL92) v3.6.1carmedB0947
Carg06371Watermelon (Charleston Gray)carwcgB0935
Carg06371Watermelon (Charleston Gray)carwcgB0937
Carg06371Watermelon (97103) v1carwmB0961
Carg06371Watermelon (97103) v1carwmB0963
Carg06371Watermelon (97103) v2carwmbB1008
Carg06371Watermelon (97103) v2carwmbB1010
Carg06371Wax gourdcarwgoB1113
Carg06371Wax gourdcarwgoB1115
Carg06371Silver-seed gourdcarcarB266
Carg06371Cucumber (Gy14) v1carcgyB1077
Carg06371Silver-seed gourdcarcarB549
Carg06371Cucumber (Gy14) v2carcgybB0948
Carg06371Cucumber (Gy14) v2carcgybB0949
Carg06371Cucumber (Gy14) v1carcgyB1079
Carg06371Cucurbita maxima (Rimu)carcmaB1320
Carg06371Cucurbita maxima (Rimu)carcmaB1321
Carg06371Cucurbita maxima (Rimu)carcmaB1325
Carg06371Cucurbita moschata (Rifu)carcmoB1284
Carg06371Cucurbita moschata (Rifu)carcmoB1285
Carg06371Cucurbita moschata (Rifu)carcmoB1288