Carg06313 (gene) Silver-seed gourd

Overview
NameCarg06313
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_016 : 930336 .. 932482 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAGAGCCTACGTCATAATTTGTGGCAGCGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATATAAAGTCCAATTGCTTCACAAATTTTACTACCTCGTACGTTGATGCTCGAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTAAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCGACGGTATGATTCATCCTCAGGATTTTTCATTTTAGCTCGTTTTCTAGCTTATCCGCAATTGCAATGTAGTTTCTCTCATTCTCTATTTGATTTTTTTCTCTAGATTTTTGCCATTTTCGCCTGTTTTCTCGGCGTTTTTTAGTTCATCTGAAATTTCGCTTTTGTTTCTTTCTAAGAAAAGAGAATTCTCGGTTTGATTATGATGTGTTTTGTATTGGCAGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGGTGATTTCCATTTCCTCTGCTTCTGATTATCATGCTTCATTTATTCTGTTTTGTTATTAAAATTGTAGCGATTTTCTTTTCTGAGATTTCTATCTGTTCATCTGTTTAAGCTTAAACCCTAATCGACTCAAATCGCCGCTTCCAATGAAGTATGAAAACCTTTAAGTCTTGCAAGTGGAGTGACGATTTAGGAGACTTTAGCGAATTACAAGACAAATGAAGTCTTTATGATCACAGGATCGAATCGAAACCAAACACAAACTATAATCACCATCGGATTGTAGATTATCACCCGAGTTTTCTTGTCGTAGATTTTATTTTTGTTTTATCAACAGGTATAGGATTTGGATATCTGAAAAGGTTATATATCAAGTACTTACAGGAAATGGAGATGGACTTTTAAGTTGAAACTATATTTCAAAAGGTTTCTTCTCAGAATGTGTTCCAAATCTTTCCGGTTTGTAAGCTACTCCATAGATCGTTTCGTTATTGTTCTTCACTTGTTTCTTTTGTCATTGACAATAATCAGTTTATCCTTATAGTTGGAAGGGAAATCCAGTGGAAAAGTAAAGAGCAAGAGTTCTTTTTCTAAAGGCACTCCATGACATTGTTGTAACAGCTCAAGTTCACCGCTAGCAGATATTATCCTCTTTGGATTTTTCCTTTCGGGTTTCCTCTCAAAGTTTTTATAATGCGTTTGTTAGGGAGAGGTTTCCACACCCTTATACAAAAATGCTTCGCTCTCCTTCCCAACTGATGTGAGATCTTATAATCCACCCCCCTCTTCAGGGCGGCCCAACGTCTTCACTGGTACTCATTCCTCTCTCCAATCAATGTGAGATCTCACAATTGTCTTTTAGAAATATGTGAATGATGGAAAGCTTGATAGACAATCTTAACTTGCAAACTGAGTATAGCTCAATTGGTTCAATGCGTATATCCTTGATTAGGAGGTCAAAAGTGCGAATTTCCCCATTCCCATAAGTTGTTCAACTAAAAAAAGAGAAGTCAACCATAACTACAAAGCCACTAGATCAATGGTTCCTCTTAAGATCCACAATCATCGAGATTGGAGAAAGATTTTAAACTGAAGCCTCCAAACAAGCCATCACCTGAATAAGAATGCACGCAATCCAAACTTGGGGACACTATGCAAGGAGTGTTAGCAATGGCCCCTTGCATTGGTGTCTCTACAATCTTGCTTGGATCAAACTTTAGTCTTTGGTCCACTTTAAATTGGGTACTCCAATCTTTAAGAAGACGATATTGCCACTGTATCAAGTTAAGATAATTTCAACTGTTCAACTAATATGATACCAAAGTGCTGTGTCAATGTTAAAAGGATCGTTTTACTGGTTAAGAAGATTATAACAGCAAAGACCTTTGAGGGCCACCTCCTTGCCTACTCGTTTCTCTATATGTCTATTGTTCTGTAATTTCTAGGGGAAGGTTATTCTTGAAGCTCCTACTCGTCCCCCACCTGCCCCTACTCTTGTTCCTCAATGTTCTTTGCATTGTGTGATAGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGG

mRNA sequence

GGCAGAGCCTACGTCATAATTTGTGGCAGCGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATATAAAGTCCAATTGCTTCACAAATTTTACTACCTCGTACGTTGATGCTCGAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTAAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCGACGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGG

Coding sequence (CDS)

ATGCCTTGCCTTCTCATTTCGACGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGG

Protein sequence

MPCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLCSDWQSYPVAWDGRSDRRRTIPLGLSW
Homology
[Close]
BLAST of Carg06313 vs. NCBI nr
Match: XP_022957090.1 (uncharacterized protein LOC111458545 [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-09
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MPCLLI-------STDYVPTVLGNFSADVLVNRQFLIRASRTLL 38
          MPCLLI       STDYVPTVLGNFSADVLVNRQFLIRASRTLL
Sbjct: 1  MPCLLISYTNNTFSTDYVPTVLGNFSADVLVNRQFLIRASRTLL 44

[Close]
BLAST of Carg06313 vs. NCBI nr
Match: XP_022974770.1 (uncharacterized protein LOC111473496 [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 7  STDYVPTVLGNFSADVLVNRQFLIRASRTLL 38
          STDYVPTVL +FSA+VLVNRQFLIR SRTLL
Sbjct: 26 STDYVPTVLCDFSANVLVNRQFLIRDSRTLL 56

The following BLAST results are available for this feature:
BLAST of Carg06313 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957090.16.9e-0984.09uncharacterized protein LOC111458545 [Cucurbita moschata][more]
XP_022974770.11.8e-0487.10uncharacterized protein LOC111473496 [Cucurbita maxima][more]
BLAST of Carg06313 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg06313 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06313 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06313-RACarg06313-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06313Silver-seed gourdcarcarB266
Carg06313Cucumber (Gy14) v1carcgyB1077
Carg06313Silver-seed gourdcarcarB549
Carg06313Silver-seed gourdcarcarB649
Carg06313Cucumber (Gy14) v2carcgybB0946
Carg06313Cucumber (Gy14) v2carcgybB0948
Carg06313Cucumber (Gy14) v1carcgyB1078
Carg06313Cucurbita maxima (Rimu)carcmaB1320
Carg06313Cucurbita maxima (Rimu)carcmaB1321
Carg06313Cucurbita maxima (Rimu)carcmaB1325
Carg06313Cucurbita maxima (Rimu)carcmaB1327
Carg06313Cucurbita moschata (Rifu)carcmoB1284
Carg06313Cucurbita moschata (Rifu)carcmoB1285
Carg06313Cucurbita moschata (Rifu)carcmoB1288
Carg06313Cucurbita moschata (Rifu)carcmoB1289
Carg06313Cucurbita pepo (Zucchini)carcpeB1328
Carg06313Cucurbita pepo (Zucchini)carcpeB1330
Carg06313Cucurbita pepo (Zucchini)carcpeB1331
Carg06313Cucurbita pepo (Zucchini)carcpeB1333
Carg06313Wild cucumber (PI 183967)carcpiB0998
Carg06313Wild cucumber (PI 183967)carcpiB0996
Carg06313Cucumber (Chinese Long) v2carcuB0975
Carg06313Cucumber (Chinese Long) v3carcucB1003
Carg06313Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06313Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06313Melon (DHL92) v3.5.1carmeB0941
Carg06313Melon (DHL92) v3.6.1carmedB0947
Carg06313Watermelon (Charleston Gray)carwcgB0935
Carg06313Watermelon (Charleston Gray)carwcgB0936
Carg06313Watermelon (97103) v1carwmB0961
Carg06313Watermelon (97103) v2carwmbB1008
Carg06313Watermelon (97103) v2carwmbB1009
Carg06313Wax gourdcarwgoB1118