Carg06228 (gene) Silver-seed gourd

Overview
NameCarg06228
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L14, putative
LocationCucurbita_argyrosperma_scaffold_016 : 373735 .. 375626 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGGAAAGAACCCTAGGCTCGTCTTCCGTCTCTGTAAAACCCTACAGCCTGAAGATGGTGAGGCTTCTCTTCCTTCGTATTTCTTCTCCCAACTACGAATCGACAGCGCATGGTGGTGTTGTTTTCTTCCTGAGTTTATGTTCTGCGGATTGTTTATGAATTTCGTGTTTTCTGAATTGTTTCTGTAGCCGTTCAAGAGGTATGTTGAGATCGGGAGGGTCGCTCTCGTCAACTATGGCGAAGATTACGGAAAGCTTGTTGTGATTGTCGATGTCATTGACCAGAACAGAGTAATTTTCTCTGCTATTGCTTACTTTTTCGATGAGTATTACTTTTTTAGTTTGAATTTGTATCAATCCTCTTGACATTCATAAGCCACGGAAAACGGAAGCTCTATGCTTCCCCTCTCCTTTGTTTCTTCTGAATTTGATGTTTGCGTTATGATCTAAACATATTAATATCATAAAATTCTGCTATTTATTATCTAGGAAAATTATTTCATAGCTTTTTCAAGTTTGAAGTGATAATTGTTGAAATAATATACAGCATTCCTTATTTAACTTTATGTTCATTTAGTAGGTCGCTAATTAGTGGTCATTGAATCAGTAGTTGGGTTGAGGATGATGCAAATTACTATTGATTGATGGTTAGCTTAAACTGTTTTCTCTGGCTGATTCTCCAGAAACCAAAAGGGGTGTTTCGTTGGTTGTTCAAATTTATGGTTGTTTGATGCGCTGATGAATGTATGTCGCACTGGATGTTTGTAAACATTCTTGCTTGTTTCAATGGATATGTTCCATTTTTTCTTTCCCTACTGAATTTGATTCTAGAGTATCCAATTGTCTTTTGTAGAAAAGAAAGGATTTGGATGGAATTGGTATATGCATGCATTTTATGTAGTCGTTTCCTGGTGACTTGGGTTTAGTTTTTTCAATATTTGACTAGTTGCTAACAACACGAGCATAGCTCAACTATTAAGTCGTTTTTACTTCCTCGGAGAGGTTGTAGGTTTGAATCCCTCCCTCCATGTGATATAACACTGGATTTTTTTTTTTATTAGTTGTTCATTCTATATATTTTTTTCTAATGCCACTGTGTACAGGCTCTGGTGGATGCTCCTGATATGGTCAGGTCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAGCTCATTGAAGCCATGAAGGCTGCTGGTATGCTTTTCAACTGATTTCACTTTCAAATACCTAATTCTTCTACTACCACCCTCAATTGGGGTGTTGTTTTTGTTTGCCTCATGTCTAACCCGTTGTTTCCGTCATGTCAGATGTTCAGAAAAAGTGGGAGGATAGCTCTTGGGGGCGAAAACTTCTCGTTAAAAAACGAAGGGCATCCCTTAACGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGGTCAGTGATGATATGTGATGCGTCTGTACTTTCTCTTGTTCCCCCCACCCTCTTTCTTTAGCATCAATAAGTATAAGAGCTCTAAACCTGCTGTTTCTCTCGTGTTCTTGATTCATGGCAACCTATTTCTCAAATGGATATTATTTATATTTTTGCAGAGAGCTGGATTGGTGAGGCAAGAGCTTGCAAAGCTGAAAAAGAGTGAATCTTAGAAAACCATTTCTTTATCTTCAAATTTTGCTAGAGATCAATTTAAATGTTGTGGATTGCTCTCCCTTTTGCTTCTCAAGCACTTGAGAATTTGGGTTGCTTCTGAAGTGCATGGAGTTTTGGACATCCAAGTGTAGTGAGTACAACTGCATATGCCTTTTGTTTTCTATTTGTTTTTTTGTTTAATGTCTGCTTCACTTGCTTGAACTTTCATTTAGTAAGT

mRNA sequence

AGAGGAAAGAACCCTAGGCTCGTCTTCCGTCTCTGTAAAACCCTACAGCCTGAAGATGCCGTTCAAGAGGTATGTTGAGATCGGGAGGGTCGCTCTCGTCAACTATGGCGAAGATTACGGAAAGCTTGTTGTGATTGTCGATGTCATTGACCAGAACAGAGCTCTGGTGGATGCTCCTGATATGGTCAGGTCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAGCTCATTGAAGCCATGAAGGCTGCTGATGTTCAGAAAAAGTGGGAGGATAGCTCTTGGGGGCGAAAACTTCTCGTTAAAAAACGAAGGGCATCCCTTAACGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGAGAGCTGGATTGGTGAGGCAAGAGCTTGCAAAGCTGAAAAAGAGTGAATCTTAGAAAACCATTTCTTTATCTTCAAATTTTGCTAGAGATCAATTTAAATGTTGTGGATTGCTCTCCCTTTTGCTTCTCAAGCACTTGAGAATTTGGGTTGCTTCTGAAGTGCATGGAGTTTTGGACATCCAAGTGTAGTGAGTACAACTGCATATGCCTTTTGTTTTCTATTTGTTTTTTTGTTTAATGTCTGCTTCACTTGCTTGAACTTTCATTTAGTAAGT

Coding sequence (CDS)

ATGCCGTTCAAGAGGTATGTTGAGATCGGGAGGGTCGCTCTCGTCAACTATGGCGAAGATTACGGAAAGCTTGTTGTGATTGTCGATGTCATTGACCAGAACAGAGCTCTGGTGGATGCTCCTGATATGGTCAGGTCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAGCTCATTGAAGCCATGAAGGCTGCTGATGTTCAGAAAAAGTGGGAGGATAGCTCTTGGGGGCGAAAACTTCTCGTTAAAAAACGAAGGGCATCCCTTAACGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGAGAGCTGGATTGGTGAGGCAAGAGCTTGCAAAGCTGAAAAAGAGTGAATCTTAG

Protein sequence

MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIDIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGLVRQELAKLKKSES
Homology
[Close]
BLAST of Carg06228 vs. NCBI nr
Match: XP_022947422.1 (60S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022974503.1 60S ribosomal protein L14-2-like [Cucurbita maxima] >XP_023521269.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo] >XP_023521270.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo] >XP_023539135.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 9.2e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]
BLAST of Carg06228 vs. NCBI nr
Match: XP_022924785.1 (60S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022979350.1 60S ribosomal protein L14-2-like [Cucurbita maxima] >XP_023527238.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 2.0e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKL+KSES
Sbjct: 121 VRQELAKLRKSES 133

[Close]
BLAST of Carg06228 vs. NCBI nr
Match: XP_022947433.1 (60S ribosomal protein L14-2-like [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           D KRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DTKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]
BLAST of Carg06228 vs. NCBI nr
Match: XP_022974504.1 (60S ribosomal protein L14-2-like [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 4.6e-63
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASL DFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLTDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]
BLAST of Carg06228 vs. NCBI nr
Match: XP_022143563.1 (60S ribosomal protein L14-2-like [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVID NRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDHNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAM AADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMSAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]
BLAST of Carg06228 vs. TAIR10
Match: AT4G27090.1 (Ribosomal protein L14)

HSP 1 Score: 212.6 bits (540), Expect = 1.5e-55
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIK+AG+
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKK 131
           VRQELAKLKK
Sbjct: 121 VRQELAKLKK 130

[Close]
BLAST of Carg06228 vs. TAIR10
Match: AT2G20450.1 (Ribosomal protein L14)

HSP 1 Score: 210.7 bits (535), Expect = 5.6e-55
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIKRAG+
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKK 131
           VRQELAKLK+
Sbjct: 121 VRQELAKLKR 130

[Close]
BLAST of Carg06228 vs. Swiss-Prot
Match: sp|Q9T043|RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana OX=3702 GN=RPL14B PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-54
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIK+AG+
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKK 131
           VRQELAKLKK
Sbjct: 121 VRQELAKLKK 130

[Close]
BLAST of Carg06228 vs. Swiss-Prot
Match: sp|Q9SIM4|RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana OX=3702 GN=RPL14A PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-53
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIKRAG+
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKK 131
           VRQELAKLK+
Sbjct: 121 VRQELAKLKR 130

[Close]
BLAST of Carg06228 vs. Swiss-Prot
Match: sp|P55844|RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.8e-53
Identity = 106/131 (80.92%), Postives = 122/131 (93.13%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVAL+NYG+DYG+LVVIVDVIDQ RALVDAPDM RS +NFKRLSLTD+KI
Sbjct: 1   MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KK+LI+A++AADV+ KW  SSWGRKL+VKK RA+LNDFDRFK+MLAKIKRA  
Sbjct: 61  DIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAG 120

Query: 121 VRQELAKLKKS 132
           VRQELAKLKK+
Sbjct: 121 VRQELAKLKKT 131

[Close]
BLAST of Carg06228 vs. Swiss-Prot
Match: sp|Q7XYA7|RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica OX=83288 GN=RPL14 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-25
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPD--MVRSQMNFKRLSLTDI 60
           M F R+VE GRVALV+YGE   KLVVIVD++DQNR LVD+P   + R  +N KR++LT I
Sbjct: 1   MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSI 60

Query: 61  KI-DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKR 120
           K+ DI R     E+     AA V + +  S WG+KL  +++RA+L+DF RFK+M+A++K+
Sbjct: 61  KVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKK 120

Query: 121 AGLVRQELAKLK 130
           +  +  ELAKLK
Sbjct: 121 SKAINAELAKLK 132

[Close]
BLAST of Carg06228 vs. Swiss-Prot
Match: sp|Q9CR57|RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus OX=10090 GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 101.7 bits (252), Expect = 6.6e-21
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAP--DMVRSQMNFKRLSLTDI 60
           M F+RYVE+GRVA +++G   GKLV IVDVIDQNRALVD P   + R  M FK + LTD 
Sbjct: 1   MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDF 60

Query: 61  KIDIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFK 110
            +      R+K + +A + AD+  KW  + W +K+  ++R+A + DFDRFK
Sbjct: 61  ILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFK 111

[Close]
BLAST of Carg06228 vs. TrEMBL
Match: tr|A0A0A0L4D3|A0A0A0L4D3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134930 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.0e-62
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKEL+EAMKAADVQKKWEDSSWGRKLLVK+RRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKS S
Sbjct: 121 VRQELAKLKKSAS 133

[Close]
BLAST of Carg06228 vs. TrEMBL
Match: tr|A0A1S3AWM2|A0A1S3AWM2_CUCME (60S ribosomal protein L14-1-like OS=Cucumis melo OX=3656 GN=LOC103483580 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-62
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 68  MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 127

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKA DVQKKWEDSSWGRKLLVKKRRA+LNDFDRFKLMLAKIKRAGL
Sbjct: 128 DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKRAGL 187

Query: 121 VRQELAKLKKSES 134
           VRQEL+KLKKS+S
Sbjct: 188 VRQELSKLKKSQS 200

[Close]
BLAST of Carg06228 vs. TrEMBL
Match: tr|A0A1S3AX66|A0A1S3AX66_CUCME (probable 60S ribosomal protein L14 OS=Cucumis melo OX=3656 GN=LOC103483582 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-62
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQ+NFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQINFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKEL+EAMKAADVQKKWEDSSWGRKLLVK+RRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKS S
Sbjct: 121 VRQELAKLKKSAS 133

[Close]
BLAST of Carg06228 vs. TrEMBL
Match: tr|A0A0A0L725|A0A0A0L725_CUCSA (Csf-1 protein OS=Cucumis sativus OX=3659 GN=Csa_3G134920 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-62
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKA DVQKKWEDSSWGRKLLVKKRRA+LNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQEL+KLKKS+S
Sbjct: 121 VRQELSKLKKSQS 133

[Close]
BLAST of Carg06228 vs. TrEMBL
Match: tr|A0A1S3CD11|A0A1S3CD11_CUCME (60S ribosomal protein L14-2-like OS=Cucumis melo OX=3656 GN=LOC103499430 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 124/133 (93.23%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KKELIEAMKA DVQKKWE+SSWGRKL+VKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKK+E+
Sbjct: 121 VRQELAKLKKAEA 133

The following BLAST results are available for this feature:
BLAST of Carg06228 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947422.19.2e-64100.0060S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022974503.1 60S riboso... [more]
XP_022924785.12.0e-6399.2560S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022979350.1 60S riboso... [more]
XP_022947433.13.5e-6399.2560S ribosomal protein L14-2-like [Cucurbita moschata][more]
XP_022974504.14.6e-6399.2560S ribosomal protein L14-2-like [Cucurbita maxima][more]
XP_022143563.11.3e-6298.5060S ribosomal protein L14-2-like [Momordica charantia][more]
BLAST of Carg06228 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27090.11.5e-5584.62Ribosomal protein L14[more]
AT2G20450.15.6e-5583.85Ribosomal protein L14[more]
BLAST of Carg06228 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9T043|RL142_ARATH2.6e-5484.6260S ribosomal protein L14-2 OS=Arabidopsis thaliana OX=3702 GN=RPL14B PE=1 SV=1[more]
sp|Q9SIM4|RL141_ARATH1.0e-5383.8560S ribosomal protein L14-1 OS=Arabidopsis thaliana OX=3702 GN=RPL14A PE=2 SV=1[more]
sp|P55844|RL14_PEA3.8e-5380.92Probable 60S ribosomal protein L14 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
sp|Q7XYA7|RL14_GRIJA5.7e-2550.0060S ribosomal protein L14 OS=Griffithsia japonica OX=83288 GN=RPL14 PE=2 SV=1[more]
sp|Q9CR57|RL14_MOUSE6.6e-2147.7560S ribosomal protein L14 OS=Mus musculus OX=10090 GN=Rpl14 PE=1 SV=3[more]
BLAST of Carg06228 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4D3|A0A0A0L4D3_CUCSA2.0e-6297.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134930 PE=4 SV=1[more]
tr|A0A1S3AWM2|A0A1S3AWM2_CUCME5.7e-6296.2460S ribosomal protein L14-1-like OS=Cucumis melo OX=3656 GN=LOC103483580 PE=4 SV... [more]
tr|A0A1S3AX66|A0A1S3AX66_CUCME5.7e-6296.99probable 60S ribosomal protein L14 OS=Cucumis melo OX=3656 GN=LOC103483582 PE=4 ... [more]
tr|A0A0A0L725|A0A0A0L725_CUCSA5.7e-6296.24Csf-1 protein OS=Cucumis sativus OX=3659 GN=Csa_3G134920 PE=4 SV=1[more]
tr|A0A1S3CD11|A0A1S3CD11_CUCME1.1e-6093.2360S ribosomal protein L14-2-like OS=Cucumis melo OX=3656 GN=LOC103499430 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR002784Ribosomal_L14e_dom
IPR014722Rib_L2_dom2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06228-RACarg06228-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 1..84
e-value: 3.4E-32
score: 112.5
IPR002784Ribosomal protein L14e domainPFAMPF01929Ribosomal_L14ecoord: 45..117
e-value: 7.2E-26
score: 90.4
NoneNo IPR availablePANTHERPTHR1112760S RIBOSOMAL PROTEIN L14coord: 1..132
NoneNo IPR availableCDDcd06088KOW_RPL14coord: 7..79
e-value: 1.42781E-20
score: 79.4418
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 5..93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06228CmaCh17G001530Cucurbita maxima (Rimu)carcmaB1321
Carg06228CmaCh08G010750Cucurbita maxima (Rimu)carcmaB1327
Carg06228CmoCh17G001520Cucurbita moschata (Rifu)carcmoB1285
Carg06228CmoCh08G010500Cucurbita moschata (Rifu)carcmoB1289
Carg06228Lsi09G012220Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06228CsGy2G010300Cucumber (Gy14) v2carcgybB0945
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06228Wax gourdcarwgoB1114
Carg06228Wax gourdcarwgoB1120
Carg06228Wax gourdcarwgoB1123
Carg06228Silver-seed gourdcarcarB274
Carg06228Silver-seed gourdcarcarB266
Carg06228Cucumber (Gy14) v1carcgyB1077
Carg06228Silver-seed gourdcarcarB600
Carg06228Silver-seed gourdcarcarB610
Carg06228Silver-seed gourdcarcarB649
Carg06228Cucumber (Gy14) v2carcgybB0948
Carg06228Cucumber (Gy14) v1carcgyB1080
Carg06228Cucurbita maxima (Rimu)carcmaB1320
Carg06228Cucurbita maxima (Rimu)carcmaB1322
Carg06228Cucurbita maxima (Rimu)carcmaB1323
Carg06228Cucurbita maxima (Rimu)carcmaB1325
Carg06228Cucurbita moschata (Rifu)carcmoB1284
Carg06228Cucurbita moschata (Rifu)carcmoB1286
Carg06228Cucurbita moschata (Rifu)carcmoB1287
Carg06228Cucurbita moschata (Rifu)carcmoB1288
Carg06228Cucurbita pepo (Zucchini)carcpeB1328
Carg06228Cucurbita pepo (Zucchini)carcpeB1329
Carg06228Cucurbita pepo (Zucchini)carcpeB1330
Carg06228Cucurbita pepo (Zucchini)carcpeB1331
Carg06228Cucurbita pepo (Zucchini)carcpeB1332
Carg06228Cucurbita pepo (Zucchini)carcpeB1333
Carg06228Wild cucumber (PI 183967)carcpiB0998
Carg06228Wild cucumber (PI 183967)carcpiB0995
Carg06228Cucumber (Chinese Long) v2carcuB0974
Carg06228Cucumber (Chinese Long) v2carcuB0975
Carg06228Cucumber (Chinese Long) v3carcucB1001
Carg06228Cucumber (Chinese Long) v3carcucB1003
Carg06228Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06228Bottle gourd (USVL1VR-Ls)carlsiB879
Carg06228Melon (DHL92) v3.5.1carmeB0939
Carg06228Melon (DHL92) v3.5.1carmeB0941
Carg06228Melon (DHL92) v3.6.1carmedB0945
Carg06228Melon (DHL92) v3.6.1carmedB0947
Carg06228Watermelon (Charleston Gray)carwcgB0935
Carg06228Watermelon (Charleston Gray)carwcgB0936
Carg06228Watermelon (Charleston Gray)carwcgB0938
Carg06228Watermelon (97103) v1carwmB0962
Carg06228Watermelon (97103) v1carwmB0960
Carg06228Watermelon (97103) v1carwmB0961
Carg06228Watermelon (97103) v2carwmbB1008
Carg06228Watermelon (97103) v2carwmbB1009
Carg06228Watermelon (97103) v2carwmbB1011