Carg06223 (gene) Silver-seed gourd

Overview
NameCarg06223
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L2, chloroplastic
LocationCucurbita_argyrosperma_scaffold_016 : 359054 .. 359436 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGAAACTCCTATTAACATAGACGCGGCCATACATAATATAGAAATCACACTTGGGAAGGGAGGACAATTAGCTAGAGCAACAAGTGCTGTAGCGGAACTGATTGCAAAAGAGGAGAAATCAGCTACATTAAAATTACCTTCTGGGGAGGCCCGTTTGATATCCAAAAATTGCTCAGCAACAATCCAACAAGTGGGGAATGCAGGGGGTAAACCAAAAAAGGTTTGGGTAGAGCCGAATCTAAATGCTGGCTAGTAAGAGTAGTTATGAACCCTGTAGACCATCCCCGTGAGGTGGTGAAGGGAGGGCCCCAATTGGTAGATAAAAACCTGCAACACCTTGAGGTTATCCTGCACTTGAAAGAAGAGGTAGAAGACGAAAAT

mRNA sequence

CCTGAAACTCCTATTAACATAGACGCGGCCATACATAATATAGAAATCACACTTGGGAAGGGAGGACAATTAGCTAGAGCAACAAGTGCTGTAGCGGAACTGATTGCAAAAGAGGAGAAATCAGCTACATTAAAATTACCTTCTGGGGAGGCCCGTTTGATATCCAAAAATTGCTCAGCAACAATCCAACAAGTGGGGAATGCAGGGGTTATGAACCCTGTAGACCATCCCCGTGAGGTGGTGAAGGGAGGGCCCCAATTGGTAGATAAAAACCTGCAACACCTTGAGGTTATCCTGCACTTGAAAGAAGAGGTAGAAGACGAAAAT

Coding sequence (CDS)

CCTGAAACTCCTATTAACATAGACGCGGCCATACATAATATAGAAATCACACTTGGGAAGGGAGGACAATTAGCTAGAGCAACAAGTGCTGTAGCGGAACTGATTGCAAAAGAGGAGAAATCAGCTACATTAAAATTACCTTCTGGGGAGGCCCGTTTGATATCCAAAAATTGCTCAGCAACAATCCAACAAGTGGGGAATGCAGGGGTTATGAACCCTGTAGACCATCCCCGTGAGGTGGTGAAGGGAGGGCCCCAATTGGTAGATAAAAACCTGCAACACCTTGAGGTTATCCTGCACTTGAAAGAAGAGGTAGAAGACGAAAAT

Protein sequence

PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAGVMNPVDHPREVVKGGPQLVDKNLQHLEVILHLKEEVEDEN
Homology
[Close]
BLAST of Carg06223 vs. NCBI nr
Match: OTG13207.1 (putative ribosomal protein L2, Ribosomal protein S19/S15, Ribosomal protein S19, superfamily [Helianthus annuus])

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-30
Identity = 81/124 (65.32%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVG
Sbjct: 3   LGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 62

Query: 67  NAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLEVILHLK 107
           N G                        VMNPVDHP  VVKGGPQLV+KN Q L VILHL+
Sbjct: 63  NVGVNQKNLGRAGSKRWLGKRPVVRGVVMNPVDHPHGVVKGGPQLVEKNPQPLGVILHLE 122

[Close]
BLAST of Carg06223 vs. NCBI nr
Match: P21434.1 (RecName: Full=50S ribosomal protein L2, chloroplastic)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 82/130 (63.08%), Postives = 88/130 (67.69%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE R ISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRSISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLE 107
           T+ QVGN G                        VMNPVDHP  VVKG PQLV+KN Q L 
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPMGVVKGEPQLVEKNPQPLG 248

[Close]
BLAST of Carg06223 vs. NCBI nr
Match: PLY74807.1 (hypothetical protein LSAT_5X27641 [Lactuca sativa])

HSP 1 Score: 132.5 bits (332), Expect = 8.7e-28
Identity = 78/124 (62.90%), Postives = 84/124 (67.74%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +  AIHNIEITLGKGGQLARA SAVA+LIAKE KSATLKLPSGE  LISKNCSAT+  VG
Sbjct: 3   LGTAIHNIEITLGKGGQLARAASAVAKLIAKEGKSATLKLPSGEVCLISKNCSATVLPVG 62

Query: 67  NAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLEVILHLK 107
           N G                        VM PVDHP  VVKGGPQLV+ N Q L VILHL+
Sbjct: 63  NVGVNQKSWGRVVSKRWLGKRPVVRGVVMTPVDHPHGVVKGGPQLVENNPQPLGVILHLE 122

[Close]
BLAST of Carg06223 vs. NCBI nr
Match: YP_007317290.1 (ribosomal protein L2 (chloroplast) [Camellia sinensis] >YP_007317313.1 ribosomal protein L2 (chloroplast) [Camellia sinensis] >AGA55638.1 ribosomal protein L2 (chloroplast) [Camellia sinensis] >AGA55661.1 ribosomal protein L2 (chloroplast) [Camellia sinensis])

HSP 1 Score: 122.9 bits (307), Expect = 6.9e-25
Identity = 75/130 (57.69%), Postives = 82/130 (63.08%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLGKGGQL RA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLE 107
           T+ QVGN G                        VMNPVDHP    +G   +  KN Q L 
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLG 248

[Close]
BLAST of Carg06223 vs. NCBI nr
Match: EYU18891.1 (hypothetical protein MIMGU_mgv1a016476mg [Erythranthe guttata])

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-24
Identity = 69/109 (63.30%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +  AIHNIEITLGKGGQL RA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVG
Sbjct: 3   LGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 62

Query: 67  NAG------------------------VMNPVDHPREVVKGGPQLVDKN 92
           N G                        VMNPVDHP  VVKG PQLV+KN
Sbjct: 63  NVGANQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGVVKGEPQLVEKN 111

[Close]
BLAST of Carg06223 vs. TAIR10
Match: ATCG00830.1 (ribosomal protein L2)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-23
Identity = 61/101 (60.40%), Postives = 66/101 (65.35%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHP 78
           T+ QVGN G                        VMNPVDHP
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHP 229

[Close]
BLAST of Carg06223 vs. TAIR10
Match: ATCG01310.1 (ribosomal protein L2)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-23
Identity = 61/101 (60.40%), Postives = 66/101 (65.35%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHP 78
           T+ QVGN G                        VMNPVDHP
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHP 229

[Close]
BLAST of Carg06223 vs. TAIR10
Match: AT3G51190.1 (Ribosomal protein L2 family)

HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 9   AAIHNIEITLGKGGQLARATSAVAELIAKEEKSAT--LKLPSGEARLISKNCSATIQQVG 68
           A I N+E+ +G  G LARA+   A +IA   +S T  +KLPSG  +++   C A I QV 
Sbjct: 112 AVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVA 171

Query: 69  NAG 70
             G
Sbjct: 172 GGG 174

[Close]
BLAST of Carg06223 vs. Swiss-Prot
Match: sp|P21434|RK2_NICDE (50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi OX=4089 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-32
Identity = 82/130 (63.08%), Postives = 88/130 (67.69%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE R ISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRSISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLE 107
           T+ QVGN G                        VMNPVDHP  VVKG PQLV+KN Q L 
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPMGVVKGEPQLVEKNPQPLG 248

[Close]
BLAST of Carg06223 vs. Swiss-Prot
Match: sp|Q4VZK5|RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-23
Identity = 63/101 (62.38%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHP 78
           T+ QVGNAG                        VMNPVDHP
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHP 229

[Close]
BLAST of Carg06223 vs. Swiss-Prot
Match: sp|Q589A7|RK2_SILLA (50S ribosomal protein L2, chloroplastic OS=Silene latifolia OX=37657 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-23
Identity = 65/115 (56.52%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHPREVVKGGPQLVDKN 92
           T+ QVGN G                        VMNPVDHP    +G   +  KN
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKN 243

[Close]
BLAST of Carg06223 vs. Swiss-Prot
Match: sp|Q14FB6|RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.8e-23
Identity = 62/101 (61.39%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHP 78
           T+ QVGNAG                        VMNPVDHP
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHP 229

[Close]
BLAST of Carg06223 vs. Swiss-Prot
Match: sp|A4GYV2|RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.8e-23
Identity = 62/101 (61.39%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHP 78
           T+ QVGNAG                        VMNPVDHP
Sbjct: 189 TVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHP 229

[Close]
BLAST of Carg06223 vs. TrEMBL
Match: tr|A0A251TPZ5|A0A251TPZ5_HELAN (Putative ribosomal protein L2, Ribosomal protein S19/S15, Ribosomal protein S19, superfamily OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0318011 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 81/124 (65.32%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVG
Sbjct: 3   LGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 62

Query: 67  NAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLEVILHLK 107
           N G                        VMNPVDHP  VVKGGPQLV+KN Q L VILHL+
Sbjct: 63  NVGVNQKNLGRAGSKRWLGKRPVVRGVVMNPVDHPHGVVKGGPQLVEKNPQPLGVILHLE 122

[Close]
BLAST of Carg06223 vs. TrEMBL
Match: tr|A0A2J6KIJ1|A0A2J6KIJ1_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X27641 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-28
Identity = 78/124 (62.90%), Postives = 84/124 (67.74%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +  AIHNIEITLGKGGQLARA SAVA+LIAKE KSATLKLPSGE  LISKNCSAT+  VG
Sbjct: 3   LGTAIHNIEITLGKGGQLARAASAVAKLIAKEGKSATLKLPSGEVCLISKNCSATVLPVG 62

Query: 67  NAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLEVILHLK 107
           N G                        VM PVDHP  VVKGGPQLV+ N Q L VILHL+
Sbjct: 63  NVGVNQKSWGRVVSKRWLGKRPVVRGVVMTPVDHPHGVVKGGPQLVENNPQPLGVILHLE 122

[Close]
BLAST of Carg06223 vs. TrEMBL
Match: tr|L0E7N5|L0E7N5_CAMSI (Ribosomal protein L2 OS=Camellia sinensis OX=4442 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-25
Identity = 75/130 (57.69%), Postives = 82/130 (63.08%), Query Frame = 0 

Query: 1   PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSA 60
           P T + +  AIHNIEITLGKGGQL RA  AVA+LIAKE KSATLKLPSGE RLISKNCSA
Sbjct: 129 PLTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSA 188

Query: 61  TIQQVGNAG------------------------VMNPVDHPREVVKGGPQLVDKNLQHLE 107
           T+ QVGN G                        VMNPVDHP    +G   +  KN Q L 
Sbjct: 189 TVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLG 248

[Close]
BLAST of Carg06223 vs. TrEMBL
Match: tr|A0A2J6JKI9|A0A2J6JKI9_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X86700 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 72/127 (56.69%), Postives = 80/127 (62.99%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +   IHNIE  LGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVG
Sbjct: 3   LGTTIHNIEFALGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 62

Query: 67  NAG------------------------VMNPVDHPR---EVVKGGPQLVDKNLQHLEVIL 107
           N G                        VMNPVDHP    E  +GGP +V+ N Q L +IL
Sbjct: 63  NVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGXEGGPHVVENNAQPLGLIL 122

[Close]
BLAST of Carg06223 vs. TrEMBL
Match: tr|A0A022PSX7|A0A022PSX7_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016476mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 69/109 (63.30%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 7   IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVG 66
           +  AIHNIEITLGKGGQL RA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVG
Sbjct: 3   LGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 62

Query: 67  NAG------------------------VMNPVDHPREVVKGGPQLVDKN 92
           N G                        VMNPVDHP  VVKG PQLV+KN
Sbjct: 63  NVGANQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGVVKGEPQLVEKN 111

The following BLAST results are available for this feature:
BLAST of Carg06223 vs. NCBI nr
Match NameE-valueIdentityDescription
OTG13207.13.2e-3065.32putative ribosomal protein L2, Ribosomal protein S19/S15, Ribosomal protein S19,... [more]
P21434.17.1e-3063.08RecName: Full=50S ribosomal protein L2, chloroplastic[more]
PLY74807.18.7e-2862.90hypothetical protein LSAT_5X27641 [Lactuca sativa][more]
YP_007317290.16.9e-2557.69ribosomal protein L2 (chloroplast) [Camellia sinensis] >YP_007317313.1 ribosomal... [more]
EYU18891.12.6e-2463.30hypothetical protein MIMGU_mgv1a016476mg [Erythranthe guttata][more]
BLAST of Carg06223 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.11.6e-2360.40ribosomal protein L2[more]
ATCG01310.11.6e-2360.40ribosomal protein L2[more]
AT3G51190.14.8e-0441.27Ribosomal protein L2 family[more]
BLAST of Carg06223 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P21434|RK2_NICDE2.3e-3263.0850S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi OX=4089 GN=rpl2 PE=... [more]
sp|Q4VZK5|RK2_CUCSA4.4e-2362.3850S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
sp|Q589A7|RK2_SILLA5.7e-2356.5250S ribosomal protein L2, chloroplastic OS=Silene latifolia OX=37657 GN=rpl2 PE=... [more]
sp|Q14FB6|RK2B_POPAL9.8e-2361.3950S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=... [more]
sp|A4GYV2|RK2_POPTR9.8e-2361.3950S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A... [more]
BLAST of Carg06223 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A251TPZ5|A0A251TPZ5_HELAN2.1e-3065.32Putative ribosomal protein L2, Ribosomal protein S19/S15, Ribosomal protein S19,... [more]
tr|A0A2J6KIJ1|A0A2J6KIJ1_LACSA5.8e-2862.90Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X27641 PE=4 SV=1[more]
tr|L0E7N5|L0E7N5_CAMSI4.6e-2557.69Ribosomal protein L2 OS=Camellia sinensis OX=4442 GN=rpl2 PE=4 SV=1[more]
tr|A0A2J6JKI9|A0A2J6JKI9_LACSA1.7e-2456.69Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X86700 PE=4 SV=1[more]
tr|A0A022PSX7|A0A022PSX7_ERYGU1.7e-2463.30Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016476mg PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR002171Ribosomal_L2
IPR014722Rib_L2_dom2
IPR022669Ribosomal_L2_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06223-RACarg06223-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 5..94
e-value: 1.3E-10
score: 43.7
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 5..69
e-value: 1.6E-17
score: 63.8
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 3..67
e-value: 4.0E-21
score: 76.6
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 4..71
NoneNo IPR availablePANTHERPTHR13691:SF25SUBFAMILY NOT NAMEDcoord: 4..71
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 5..78

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06223Cucumber (Chinese Long) v2carcuB0974
Carg06223Cucumber (Chinese Long) v2carcuB0975
Carg06223Cucumber (Chinese Long) v3carcucB1001
Carg06223Cucumber (Chinese Long) v3carcucB1003
Carg06223Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06223Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06223Bottle gourd (USVL1VR-Ls)carlsiB879
Carg06223Melon (DHL92) v3.5.1carmeB0939
Carg06223Melon (DHL92) v3.5.1carmeB0941
Carg06223Melon (DHL92) v3.6.1carmedB0945
Carg06223Melon (DHL92) v3.6.1carmedB0947
Carg06223Watermelon (Charleston Gray)carwcgB0935
Carg06223Watermelon (Charleston Gray)carwcgB0936
Carg06223Watermelon (Charleston Gray)carwcgB0938
Carg06223Watermelon (97103) v1carwmB0962
Carg06223Watermelon (97103) v1carwmB0960
Carg06223Watermelon (97103) v1carwmB0961
Carg06223Watermelon (97103) v2carwmbB1008
Carg06223Watermelon (97103) v2carwmbB1009
Carg06223Watermelon (97103) v2carwmbB1011
Carg06223Wax gourdcarwgoB1114
Carg06223Wax gourdcarwgoB1120
Carg06223Wax gourdcarwgoB1123
Carg06223Silver-seed gourdcarcarB274
Carg06223Silver-seed gourdcarcarB266
Carg06223Cucumber (Gy14) v1carcgyB1077
Carg06223Silver-seed gourdcarcarB600
Carg06223Silver-seed gourdcarcarB610
Carg06223Silver-seed gourdcarcarB649
Carg06223Cucumber (Gy14) v2carcgybB0945
Carg06223Cucumber (Gy14) v2carcgybB0948
Carg06223Cucumber (Gy14) v1carcgyB1080
Carg06223Cucurbita maxima (Rimu)carcmaB1320
Carg06223Cucurbita maxima (Rimu)carcmaB1321
Carg06223Cucurbita maxima (Rimu)carcmaB1322
Carg06223Cucurbita maxima (Rimu)carcmaB1323
Carg06223Cucurbita maxima (Rimu)carcmaB1325
Carg06223Cucurbita maxima (Rimu)carcmaB1327
Carg06223Cucurbita moschata (Rifu)carcmoB1284
Carg06223Cucurbita moschata (Rifu)carcmoB1285
Carg06223Cucurbita moschata (Rifu)carcmoB1286
Carg06223Cucurbita moschata (Rifu)carcmoB1287
Carg06223Cucurbita moschata (Rifu)carcmoB1288
Carg06223Cucurbita moschata (Rifu)carcmoB1289
Carg06223Cucurbita pepo (Zucchini)carcpeB1328
Carg06223Cucurbita pepo (Zucchini)carcpeB1329
Carg06223Cucurbita pepo (Zucchini)carcpeB1330
Carg06223Cucurbita pepo (Zucchini)carcpeB1331
Carg06223Cucurbita pepo (Zucchini)carcpeB1332
Carg06223Cucurbita pepo (Zucchini)carcpeB1333
Carg06223Wild cucumber (PI 183967)carcpiB0998
Carg06223Wild cucumber (PI 183967)carcpiB0995