Carg06199 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06199
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alba DNA/RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_016 : 244929 .. 245767 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCGGCATGGTCATCTCAGAAGCTATTACTGAGGTTAAGAATGCAATCCGTAATGAGGACGAAAAGCTCCTCATCGTTGTCCCCGATGGTGAGGTTAAGGAGATTGCTGTATTGACCGAGTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCGTTCTACTACTACAATCTTTCTAAGGTATTCTATTGTTGCTTCCATAAGATCTTGTTTGTCTAAACCACGATATGGAGAAACACCGTTGAATCGACTTCTCTATTTAGCTTCATCTTTAGAAAATCAAAATCTGGATTGATTTTACGTTTCGTTTTGTTGCAGAGGTACGAAGTTGAGCTCTCAGCCTTGGGAATGGGTACGAGTTCTTGAATCCTTTCTTTTTTTCACAACTAGTTCACAATTCGATTTAAATAACTGGTACGACTTCCATGGATTCATGGAATACAGCTACACCAACTGTAGTGATGATTTCTGAGATTCTGAAGAAGAATGGATTGACATTGGAAAAGAGTAAGAAAATTTATCGAATCCGTTGCCATTAAATCTTTGGGAATTTGGCACTCTCTAAACACTTGTTTGGAAAATAATCTGTAGACTTGACGATATCTTCTGTCAGTTTGAAGAACGGGGAAAACGAAAGGCTGGTAATGAAACCTAAGGTTAGTGCTAAGATTTTTGATCCACTGTTCAATTTTTTGGATCTTTCGTTGGAATGATGCGTTCTTTAACATCTGTGCTAGATTGAGATTTCACTGGTAAATACAGAGAAGATCAAAAACATTACAACTGCTACAAGTGAAGATTGTTGA

mRNA sequence

ATGGAGTCCGGCATGGTCATCTCAGAAGCTATTACTGAGGTTAAGAATGCAATCCGTAATGAGGACGAAAAGCTCCTCATCGTTGTCCCCGATGGTGAGGTTAAGGAGATTGCTGTATTGACCGAGTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCGTTCTACTACTACAATCTTTCTAAGAGGTACGAAGTTGAGCTCTCAGCCTTGGGAATGGCTACACCAACTGTAGTGATGATTTCTGAGATTCTGAAGAAGAATGGATTGACATTGGAAAAGAACTTGACGATATCTTCTGTCAGTTTGAAGAACGGGGAAAACGAAAGGCTGGTAATGAAACCTAAGATTGAGATTTCACTGGTAAATACAGAGAAGATCAAAAACATTACAACTGCTACAAGTGAAGATTGTTGA

Coding sequence (CDS)

ATGGAGTCCGGCATGGTCATCTCAGAAGCTATTACTGAGGTTAAGAATGCAATCCGTAATGAGGACGAAAAGCTCCTCATCGTTGTCCCCGATGGTGAGGTTAAGGAGATTGCTGTATTGACCGAGTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCGTTCTACTACTACAATCTTTCTAAGAGGTACGAAGTTGAGCTCTCAGCCTTGGGAATGGCTACACCAACTGTAGTGATGATTTCTGAGATTCTGAAGAAGAATGGATTGACATTGGAAAAGAACTTGACGATATCTTCTGTCAGTTTGAAGAACGGGGAAAACGAAAGGCTGGTAATGAAACCTAAGATTGAGATTTCACTGGTAAATACAGAGAAGATCAAAAACATTACAACTGCTACAAGTGAAGATTGTTGA

Protein sequence

MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC

Homology

[Close]

BLAST of Carg06199 vs. NCBI nr
Match: XP_022924600.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023528324.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 6.8e-44
Identity = 107/152 (70.39%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           MESGMV+SEAI+E+KN IRNE+EKLL+V PDGEVKEIAVLTE               SNV
Sbjct: 1   MESGMVVSEAISELKNEIRNEEEKLLVVAPDGEVKEIAVLTEI-----KKKRNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKRY     EVELSALGMA PTVV I+EILKKNGL  +K LTISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTATSED 147
           GEN+RLVMKPKIEI+L+N EK+K I+TAT+ +
Sbjct: 121 GENDRLVMKPKIEIALINAEKMKKISTATTSE 147

[Close]

BLAST of Carg06199 vs. NCBI nr
Match: XP_022147424.1 (uncharacterized protein At2g34160-like [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 8.9e-44
Identity = 113/154 (73.38%), Postives = 122/154 (79.22%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           MES +V+SEA TEVK+ IRNE+EKLL+V PDG+VKEIAVLTEF              SNV
Sbjct: 1   MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEF-----KKKKNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKRY     EVELSALGMA PTVV I+EILKKNGL  EKNLTISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTA-TSEDC 148
           GEN+RLVMKPKIEI+LVN EK KNI TA TSEDC
Sbjct: 121 GENDRLVMKPKIEIALVNAEKTKNIMTATTSEDC 148

[Close]

BLAST of Carg06199 vs. NCBI nr
Match: XP_022980835.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 106/152 (69.74%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           MESGMV+SEA +EVKN IRNE+EKLL+V PD EVKEIAVLTE               SNV
Sbjct: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEI-----KKKRNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKRY     EVELSALGMA PTVV I+EILKKNGL  +K LTISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTATSED 147
           GEN+RLVMKPKIEI+L+N EK+K I+TAT+ +
Sbjct: 121 GENDRLVMKPKIEIALINAEKMKKISTATTSE 147

[Close]

BLAST of Carg06199 vs. NCBI nr
Match: XP_008438573.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 8.4e-42
Identity = 107/153 (69.93%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           M+SG V+SEA  EVKN I+NE+EKLL+  PD EVKEIAVLTEF              SNV
Sbjct: 1   MDSGTVVSEATPEVKNEIQNEEEKLLVTAPDSEVKEIAVLTEF-----KKKRNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKR+     EVELSALGMA PTVV I+EILK+NGL  +KNLTISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKNLTISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTA-TSED 147
           GEN +LVMKPKIEI+LVN EKIKNI+TA TSED
Sbjct: 121 GENGKLVMKPKIEIALVNAEKIKNISTAPTSED 148

[Close]

BLAST of Carg06199 vs. NCBI nr
Match: XP_004134424.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] >KGN56907.1 hypothetical protein Csa_3G142990 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 106/153 (69.28%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           M+SGMV+SEA  EVKN IRNE+E+LL+  PD EVKEIAVLTEF              SNV
Sbjct: 1   MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEF-----KKKRNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKR+     EVELSALGMA PTVV I+EILK+NGL  +K L ISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTA-TSED 147
           GEN +LVMKPKIEI+LVN EKIKNI+TA TSED
Sbjct: 121 GENGKLVMKPKIEIALVNAEKIKNISTAPTSED 148

[Close]

BLAST of Carg06199 vs. TAIR10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-16
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK NG  +EK +  S+V 
Sbjct: 26  SNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVD 85

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNITTATSED 147
           +K+    R V K KIEI+LV +EK   +  A +E+
Sbjct: 86  IKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

[Close]

BLAST of Carg06199 vs. TAIR10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 80.5 bits (197), Expect = 9.6e-16
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK NG  +EK +  S+V 
Sbjct: 26  SNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEKKIMTSTVD 85

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNITTATSED 147
           +K+    R V K KIEI+L  +EK   +  A +E+
Sbjct: 86  IKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

[Close]

BLAST of Carg06199 vs. TAIR10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     EVELSALGMA  TVV ISEILK NGL  EK +  S+V 
Sbjct: 43  SNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTSTVG 102

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNI 140
           +K+    ++V K KIEI L  ++K  ++
Sbjct: 103 MKDETKGKMVQKAKIEIVLGKSDKFDSL 130

[Close]

BLAST of Carg06199 vs. Swiss-Prot
Match: sp|O22969|Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-15
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK NG  +EK +  S+V 
Sbjct: 26  SNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVD 85

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNITTATSED 147
           +K+    R V K KIEI+LV +EK   +  A +E+
Sbjct: 86  IKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

[Close]

BLAST of Carg06199 vs. TrEMBL
Match: tr|A0A1S3AXD3|A0A1S3AXD3_CUCME (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103483640 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.5e-42
Identity = 107/153 (69.93%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           M+SG V+SEA  EVKN I+NE+EKLL+  PD EVKEIAVLTEF              SNV
Sbjct: 1   MDSGTVVSEATPEVKNEIQNEEEKLLVTAPDSEVKEIAVLTEF-----KKKRNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKR+     EVELSALGMA PTVV I+EILK+NGL  +KNLTISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKNLTISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTA-TSED 147
           GEN +LVMKPKIEI+LVN EKIKNI+TA TSED
Sbjct: 121 GENGKLVMKPKIEIALVNAEKIKNISTAPTSED 148

[Close]

BLAST of Carg06199 vs. TrEMBL
Match: tr|A0A0A0L8F8|A0A0A0L8F8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142990 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 106/153 (69.28%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 1   MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFXXXXXXXXXXXXXXSNV 60
           M+SGMV+SEA  EVKN IRNE+E+LL+  PD EVKEIAVLTEF              SNV
Sbjct: 1   MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEF-----KKKRNQIQVSNV 60

Query: 61  KKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKN 120
           KKP FYYYNLSKR+     EVELSALGMA PTVV I+EILK+NGL  +K L ISSVSLKN
Sbjct: 61  KKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKN 120

Query: 121 GENERLVMKPKIEISLVNTEKIKNITTA-TSED 147
           GEN +LVMKPKIEI+LVN EKIKNI+TA TSED
Sbjct: 121 GENGKLVMKPKIEIALVNAEKIKNISTAPTSED 148

[Close]

BLAST of Carg06199 vs. TrEMBL
Match: tr|M4D2Z0|M4D2Z0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK +G  +EK +  S+V 
Sbjct: 26  SNTKKPLFFYVNLAKRYMQQYADVELSALGMAIATVVTVAEILKNSGFAVEKKIMTSTVD 85

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNITTATSED 147
           +K+G   R V KPKIEI+L  +EK   +  A +ED
Sbjct: 86  IKDGARGRPVQKPKIEITLAKSEKFDELMAAANED 120

[Close]

BLAST of Carg06199 vs. TrEMBL
Match: tr|M4CML1|M4CML1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     +VELSALGMA  TVV I+EILK NG  +EK +  S+V 
Sbjct: 26  SNTKKPLFFYVNLAKRYMQEHNDVELSALGMAIATVVTIAEILKNNGFAVEKKIMTSTVD 85

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNITTATSED 147
           +K+G   R V KPKIEI+L  +EK   +  A +E+
Sbjct: 86  IKDGSRGRPVQKPKIEITLGKSEKFDELMAAANEE 120

[Close]

BLAST of Carg06199 vs. TrEMBL
Match: tr|V4NYL1|V4NYL1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017416mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 58  SNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVS 117
           SN KKP F+Y NL+KRY     EVELSALGMAT TVV I+EILK NG  +EK +  S+V 
Sbjct: 26  SNTKKPLFFYVNLAKRYMQQYNEVELSALGMATATVVTIAEILKNNGFAVEKKIMTSTVE 85

Query: 118 LKNGENERLVMKPKIEISLVNTEKIKNITTATSED 147
           +K+    R V K KIEI+LV +EK   +  A +E+
Sbjct: 86  IKDDSRGRPVQKVKIEITLVKSEKFDELMAAANEE 120

The following BLAST results are available for this feature:

BLAST of Carg06199 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924600.1	6.8e-44	70.39	uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023528324.1 unch...	[more]
XP_022147424.1	8.9e-44	73.38	uncharacterized protein At2g34160-like [Momordica charantia]	[more]
XP_022980835.1	1.3e-42	69.74	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
XP_008438573.1	8.4e-42	69.93	PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]	[more]
XP_004134424.1	3.2e-41	69.28	PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] >KGN56907.1 ...	[more]

BLAST of Carg06199 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34160.1	4.3e-16	50.53	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	9.6e-16	49.47	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	1.1e-14	53.41	Alba DNA/RNA-binding protein	[more]

BLAST of Carg06199 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22969\|Y2416_ARATH	7.8e-15	50.53	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Carg06199 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXD3\|A0A1S3AXD3_CUCME	5.5e-42	69.93	uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103483640 P...	[more]
tr\|A0A0A0L8F8\|A0A0A0L8F8_CUCSA	2.1e-41	69.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142990 PE=4 SV=1	[more]
tr\|M4D2Z0\|M4D2Z0_BRARP	1.1e-13	51.58	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|M4CML1\|M4CML1_BRARP	1.1e-13	52.63	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|V4NYL1\|V4NYL1_EUTSA	1.1e-13	53.68	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017416mg PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036882	Alba-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06199-RA	Carg06199-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036882	Alba-like domain superfamily	GENE3D	G3DSA:3.30.110.20		coord: 51..147 e-value: 3.3E-25 score: 90.2
IPR036882	Alba-like domain superfamily	SUPERFAMILY	SSF82704	AlbA-like	coord: 51..138
None	No IPR available	PANTHER	PTHR31947:SF5	SUBFAMILY NOT NAMED	coord: 29..145
None	No IPR available	PANTHER	PTHR31947	FAMILY NOT NAMED	coord: 29..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06199	Cla021562	Watermelon (97103) v1	carwmB0961
Carg06199	Csa3G142990	Cucumber (Chinese Long) v2	carcuB0975
Carg06199	MELO3C006467	Melon (DHL92) v3.5.1	carmeB0941
Carg06199	ClCG05G004580	Watermelon (Charleston Gray)	carwcgB0935
Carg06199	CSPI03G12440	Wild cucumber (PI 183967)	carcpiB0998
Carg06199	Cucsa.254970	Cucumber (Gy14) v1	carcgyB1077
Carg06199	CmaCh14G017830	Cucurbita maxima (Rimu)	carcmaB1320
Carg06199	CmaCh00G004990	Cucurbita maxima (Rimu)	carcmaB1318
Carg06199	CmoCh14G018190	Cucurbita moschata (Rifu)	carcmoB1284
Carg06199	Lsi05G016770	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06199	Cp4.1LG03g10050	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06199	Cp4.1LG08g03630	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06199	CsGy3G012570	Cucumber (Gy14) v2	carcgybB0948
Carg06199	MELO3C006467.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06199	CsaV3_3G012560	Cucumber (Chinese Long) v3	carcucB1003
Carg06199	Cla97C05G085610	Watermelon (97103) v2	carwmbB1008

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06199	Carg16583	Silver-seed gourd	carcarB274

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06199	Silver-seed gourd	carcarB266
Carg06199	Silver-seed gourd	carcarB610
Carg06199	Silver-seed gourd	carcarB649
Carg06199	Cucumber (Gy14) v2	carcgybB0945
Carg06199	Cucumber (Gy14) v1	carcgyB1080
Carg06199	Cucurbita maxima (Rimu)	carcmaB1321
Carg06199	Cucurbita maxima (Rimu)	carcmaB1323
Carg06199	Cucurbita maxima (Rimu)	carcmaB1325
Carg06199	Cucurbita maxima (Rimu)	carcmaB1327
Carg06199	Cucurbita maxima (Rimu)	carcmaB1328
Carg06199	Cucurbita moschata (Rifu)	carcmoB1285
Carg06199	Cucurbita moschata (Rifu)	carcmoB1288
Carg06199	Cucurbita moschata (Rifu)	carcmoB1289
Carg06199	Cucurbita moschata (Rifu)	carcmoB1290
Carg06199	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06199	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06199	Wild cucumber (PI 183967)	carcpiB0995
Carg06199	Cucumber (Chinese Long) v2	carcuB0974
Carg06199	Cucumber (Chinese Long) v3	carcucB1001
Carg06199	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06199	Bottle gourd (USVL1VR-Ls)	carlsiB877
Carg06199	Melon (DHL92) v3.5.1	carmeB0939
Carg06199	Melon (DHL92) v3.6.1	carmedB0945
Carg06199	Watermelon (Charleston Gray)	carwcgB0934
Carg06199	Watermelon (Charleston Gray)	carwcgB0936
Carg06199	Watermelon (97103) v1	carwmB0962
Carg06199	Watermelon (97103) v1	carwmB0959
Carg06199	Watermelon (97103) v2	carwmbB1009
Carg06199	Watermelon (97103) v2	carwmbB1013
Carg06199	Wax gourd	carwgoB1114
Carg06199	Wax gourd	carwgoB1127