Carg06193 (gene) Silver-seed gourd

NameCarg06193
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin protein ligase DRIP2-like isoform X2
LocationCucurbita_argyrosperma_scaffold_016 : 224048 .. 224792 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATCTCACAGTTCACTCCTCTTCGAGGCCCAGTATCCTTGCTCGAACTCGTTCCCCTCTCCAATTGATGCGGGACCCTCCACCCCTTTCAAAGATCAACCTTCTCGCTGACACACAGCCTAGTGTCCACCCCTTTGAGGCTCAGCCTCTTTGTTGGCACATCGTTTGGTATCTAACCCTGAAACCGTTTATAACGGCTCAAGCCCACCGCTAGCAAATATTATTCTCTTTGGGTCTTTCCTTCCGAACTTCCCTCCAAGATTTTAAAAACACGTCTATTCGGAAGAGGTTTCCACATAAGAATGTTTCGTTCCGGTCTCCAAGCAAGCTTCAATCGAAGTTATTACTGTTTGATAATCTGCAGAGCAGAGCAGACAATGGATGATCTATGGGAAAAGGTATTATTCCCTTGCAAAAGGAAGGAAGGAAAAGGCTCCTGAAACACACACACACAGATCGCTCTCTTTAGCAATCATAACGAGAGTACAGCTTCACCTTCTCATCCTGTAACGCAAATGGTGTCGAAATCGACAGCACAAGACAACCTCGTCCCACAACAATGTCTTTCCACCGTGATTGCTCACAGAAAACTCGTCTGGGTTCAAAATAACCGGAACAAGTTTAATGACTGTAATATACAAGTGAATGTTGCCAAGGCAGAGGCAATCCAGATTGAAGATATCAATTGTAATGTTCAAGAACATGGTTACAAGCCAATGATGGAAAGAGTTGAAAGTTGA

mRNA sequence

ATGTGGGATCTCACAGTTCACTCCTCTTCGAGGCCCAGTATCCTTGCTCGAACTCGTTCCCCTCTCCAATTGATGCGGGACCCTCCACCCCTTTCAAAGATCAACCTTCTCGCTGACACACAGCCTAGTGTCCACCCCTTTGAGGCTCAGCCTCTTTGTTGGCACATCGTTTGGTATCTAACCCTGAAACCAGCAGAGCAGACAATGGATGATCTATGGGAAAAGAGTACAGCTTCACCTTCTCATCCTGTAACGCAAATGGTGTCGAAATCGACAGCACAAGACAACCTCGTCCCACAACAATGTCTTTCCACCGTGATTGCTCACAGAAAACTCGTCTGGGTTCAAAATAACCGGAACAAGTTTAATGACTGTAATATACAAGTGAATGTTGCCAAGGCAGAGGCAATCCAGATTGAAGATATCAATTGTAATGTTCAAGAACATGGTTACAAGCCAATGATGGAAAGAGTTGAAAGTTGA

Coding sequence (CDS)

ATGTGGGATCTCACAGTTCACTCCTCTTCGAGGCCCAGTATCCTTGCTCGAACTCGTTCCCCTCTCCAATTGATGCGGGACCCTCCACCCCTTTCAAAGATCAACCTTCTCGCTGACACACAGCCTAGTGTCCACCCCTTTGAGGCTCAGCCTCTTTGTTGGCACATCGTTTGGTATCTAACCCTGAAACCAGCAGAGCAGACAATGGATGATCTATGGGAAAAGAGTACAGCTTCACCTTCTCATCCTGTAACGCAAATGGTGTCGAAATCGACAGCACAAGACAACCTCGTCCCACAACAATGTCTTTCCACCGTGATTGCTCACAGAAAACTCGTCTGGGTTCAAAATAACCGGAACAAGTTTAATGACTGTAATATACAAGTGAATGTTGCCAAGGCAGAGGCAATCCAGATTGAAGATATCAATTGTAATGTTCAAGAACATGGTTACAAGCCAATGATGGAAAGAGTTGAAAGTTGA

Protein sequence

MWDLTVHSSSRPSILARTRSPLQLMRDPPPLSKINLLADTQPSVHPFEAQPLCWHIVWYLTLKPAEQTMDDLWEKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRNKFNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVES
BLAST of Carg06193 vs. NCBI nr
Match: XP_022924759.1 (E3 ubiquitin protein ligase DRIP2-like [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13
Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 60  LTLKPAEQTMDDLWEKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNR 119
           L  K  E+++  L   +T   SH   + + K+TAQ+NLV QQC+S +I  RKLV+VQN +
Sbjct: 188 LPTKRKERSLSSLDIDNTNMISHSAAK-IPKATAQENLVVQQCISNMIPQRKLVFVQNKQ 247

Query: 120 N---------------------KFNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERV 160
           N                       NDCNIQ  V K E IQI+D  C VQEH +KP+MERV
Sbjct: 248 NNTQVMERETDDLNRKEEATATSSNDCNIQDTVVKPEPIQIDDNYCKVQEHSHKPIMERV 307

BLAST of Carg06193 vs. NCBI nr
Match: XP_022980114.1 (E3 ubiquitin protein ligase DRIP2-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-13
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 60  LTLKPAEQTMDDLWEKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNR 119
           L  K  E+++  L   +T + SH   + + K+TAQ+NLV QQCLS +I  RKL++ QN +
Sbjct: 104 LPTKRKERSLSSLHIDNTNTISHSAAK-IPKATAQENLVVQQCLSNMIPQRKLIYDQNKQ 163

Query: 120 N---------------------KFNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERV 160
           N                       NDCNIQ  V K E IQI+D  C VQEH +KP+MERV
Sbjct: 164 NNTQVMERETDDFNRKEEATATSSNDCNIQDTVVKPEPIQIDDNYCKVQEHSHKPIMERV 223

BLAST of Carg06193 vs. NCBI nr
Match: XP_016899066.1 (PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 0

Query: 74  EKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRNK------------ 133
           E S  +     T+M+S ST+Q++   QQCLST+I H+KL +  N +N             
Sbjct: 38  EGSYTTTDSGTTKMLSTSTSQESFAKQQCLSTMIDHKKLNFDLNKQNNGQVMERITDDLN 97

Query: 134 --------FNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVE 160
                    NDC IQ  +AKAE IQI+D  CN+QEHG KP+MERVE
Sbjct: 98  KKEASVTCSNDCKIQDTLAKAETIQIDDNYCNIQEHGNKPIMERVE 143

BLAST of Carg06193 vs. NCBI nr
Match: XP_016899067.1 (PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 0

Query: 74  EKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRNK------------ 133
           E S  +     T+M+S ST+Q++   QQCLST+I H+KL +  N +N             
Sbjct: 38  EGSYTTTDSGTTKMLSTSTSQESFAKQQCLSTMIDHKKLNFDLNKQNNGQVMERITDDLN 97

Query: 134 --------FNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVE 160
                    NDC IQ  +AKAE IQI+D  CN+QEHG KP+MERVE
Sbjct: 98  KKEASVTCSNDCKIQDTLAKAETIQIDDNYCNIQEHGNKPIMERVE 143

BLAST of Carg06193 vs. NCBI nr
Match: XP_022147455.1 (E3 ubiquitin protein ligase DRIP2-like [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 0

Query: 71  DLWEKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRN---------- 130
           ++ E +T + S   T+ +SKS  Q+NL+PQQC +T+ AHR+L++V   ++          
Sbjct: 118 EIVEANTETSSLSNTRTLSKSAVQENLIPQQCPATLFAHRELIFVPTKQDNTRVVERETD 177

Query: 131 -------------KFNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVES 161
                        + ND NIQ  VAK   IQI+D  CN+QEHG+KPMM+RVES
Sbjct: 178 VSNQRIQEEASVTRSNDSNIQDTVAK--PIQIDDNCCNIQEHGHKPMMDRVES 228

BLAST of Carg06193 vs. TrEMBL
Match: tr|A0A1S4DSU5|A0A1S4DSU5_CUCME (E3 ubiquitin protein ligase DRIP2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484181 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.5e-12
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 0

Query: 74  EKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRNK------------ 133
           E S  +     T+M+S ST+Q++   QQCLST+I H+KL +  N +N             
Sbjct: 38  EGSYTTTDSGTTKMLSTSTSQESFAKQQCLSTMIDHKKLNFDLNKQNNGQVMERITDDLN 97

Query: 134 --------FNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVE 160
                    NDC IQ  +AKAE IQI+D  CN+QEHG KP+MERVE
Sbjct: 98  KKEASVTCSNDCKIQDTLAKAETIQIDDNYCNIQEHGNKPIMERVE 143

BLAST of Carg06193 vs. TrEMBL
Match: tr|A0A1S4DSU7|A0A1S4DSU7_CUCME (E3 ubiquitin protein ligase DRIP2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484181 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.5e-12
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 0

Query: 74  EKSTASPSHPVTQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRNK------------ 133
           E S  +     T+M+S ST+Q++   QQCLST+I H+KL +  N +N             
Sbjct: 38  EGSYTTTDSGTTKMLSTSTSQESFAKQQCLSTMIDHKKLNFDLNKQNNGQVMERITDDLN 97

Query: 134 --------FNDCNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVE 160
                    NDC IQ  +AKAE IQI+D  CN+QEHG KP+MERVE
Sbjct: 98  KKEASVTCSNDCKIQDTLAKAETIQIDDNYCNIQEHGNKPIMERVE 143

BLAST of Carg06193 vs. TrEMBL
Match: tr|A0A0A0L4K2|A0A0A0L4K2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143560 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 85  TQMVSKSTAQDNLVPQQCLSTVIAHRKLVWVQNNRNK--------------------FND 144
           ++ +S STAQ++L  QQ LST+I H KL + QN +N                      ND
Sbjct: 136 SKKLSASTAQESLTEQQYLSTMIDHTKLNFDQNKQNNGQVMERIIDDLNKKEASVTCSND 195

Query: 145 CNIQVNVAKAEAIQIEDINCNVQEHGYKPMMERVE 160
           C IQ  + KAE IQI+D  CNVQE GYKP+MER E
Sbjct: 196 CKIQDTLPKAETIQIDDSYCNVQERGYKPIMERGE 230

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022924759.14.0e-1342.98E3 ubiquitin protein ligase DRIP2-like [Cucurbita moschata][more]
XP_022980114.15.2e-1342.15E3 ubiquitin protein ligase DRIP2-like [Cucurbita maxima][more]
XP_016899066.11.3e-1143.40PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Cucumis melo][more]
XP_016899067.11.3e-1143.40PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Cucumis melo][more]
XP_022147455.13.7e-1140.71E3 ubiquitin protein ligase DRIP2-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DSU5|A0A1S4DSU5_CUCME8.5e-1243.40E3 ubiquitin protein ligase DRIP2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S4DSU7|A0A1S4DSU7_CUCME8.5e-1243.40E3 ubiquitin protein ligase DRIP2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A0A0L4K2|A0A0A0L4K2_CUCSA1.4e-0945.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143560 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06193-RACarg06193-RAmRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06193Carg16590Silver-seed gourdcarcarB274