Carg06182 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06182
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF506 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_016 : 165094 .. 165420 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTCCGATGAAGATCCAACCGATCGATATCGATGTTCGGACGGTGAGAGAGCAGGTTCGGACCGACACAGCCAAGCCTCTGTTCAAATCGCGACTCAGGCGACTTTTCGATCGGCCATTTCCGAGCGTTCTGAGAAGTTCTACGGTAGAGAAACCGATTGTAGGGGAACCGGCTCAGTTTGGCAGAGTAACTGAGTTCGAGCCAAGCTCGGTTTGCTTTAGAGCCACGCATCATACACACTTCTCACAATATGAGGTAGAGGCGATAGAGAGAAAGTACAAGCCCTCGGGTGTGCCTCGGTGGCTGTGTGAATGTGTGTGA

mRNA sequence

ATGCCTTTTCCGATGAAGATCCAACCGATCGATATCGATGTTCGGACGGTGAGAGAGCAGGTTCGGACCGACACAGCCAAGCCTCTGTTCAAATCGCGACTCAGGCGACTTTTCGATCGGCCATTTCCGAGCGTTCTGAGAAGTTCTACGGTAGAGAAACCGATTGTAGGGGAACCGGCTCAGTTTGGCAGAGTAACTGAGTTCGAGCCAAGCTCGGTTTGCTTTAGAGCCACGCATCATACACACTTCTCACAATATGAGGTAGAGGCGATAGAGAGAAAGTACAAGCCCTCGGGTGTGCCTCGGTGGCTGTGTGAATGTGTGTGA

Coding sequence (CDS)

ATGCCTTTTCCGATGAAGATCCAACCGATCGATATCGATGTTCGGACGGTGAGAGAGCAGGTTCGGACCGACACAGCCAAGCCTCTGTTCAAATCGCGACTCAGGCGACTTTTCGATCGGCCATTTCCGAGCGTTCTGAGAAGTTCTACGGTAGAGAAACCGATTGTAGGGGAACCGGCTCAGTTTGGCAGAGTAACTGAGTTCGAGCCAAGCTCGGTTTGCTTTAGAGCCACGCATCATACACACTTCTCACAATATGAGGTAGAGGCGATAGAGAGAAAGTACAAGCCCTCGGGTGTGCCTCGGTGGCTGTGTGAATGTGTGTGA

Protein sequence

MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPAQFGRVTEFEPSSVCFRATHHTHFSQYEVEAIERKYKPSGVPRWLCECV

Homology

[Close]

BLAST of Carg06182 vs. NCBI nr
Match: XP_022974410.1 (uncharacterized protein LOC111473084 [Cucurbita maxima])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA
Sbjct: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60

Query: 61 QFGRVTEFEPSSVC 75
          QF R TEFEPSSVC
Sbjct: 61 QFSRGTEFEPSSVC 74

[Close]

BLAST of Carg06182 vs. NCBI nr
Match: XP_023539817.1 (uncharacterized protein LOC111800384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA
Sbjct: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60

Query: 61 QFGRVTEFEPSSVC 75
          QF R TEFEPSSVC
Sbjct: 61 QFSRGTEFEPSSVC 74

[Close]

BLAST of Carg06182 vs. NCBI nr
Match: XP_022937081.1 (uncharacterized protein LOC111443488 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 5.4e-30
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MPFPMKIQPIDIDVRTVREQVRTDTAKPLFK RLRRLFDRPFPSVLRSSTVEKPIV EPA
Sbjct: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKLRLRRLFDRPFPSVLRSSTVEKPIVEEPA 60

Query: 61 QFGRVTEFEPSSVC 75
          QF R TEFEPSSVC
Sbjct: 61 QFSRGTEFEPSSVC 74

[Close]

BLAST of Carg06182 vs. NCBI nr
Match: XP_022138190.1 (uncharacterized protein LOC111009423 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 5.2e-25
Identity = 63/85 (74.12%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MPFPMKIQPIDID RT REQ+RTD+AKP+FKSRLRRLFDRPFPSVLR S VEKPIVGEPA
Sbjct: 1  MPFPMKIQPIDIDTRTAREQIRTDSAKPVFKSRLRRLFDRPFPSVLRISAVEKPIVGEPA 60

Query: 61 QFGRV-----------TEFEPSSVC 75
          QF              TEFEP+SVC
Sbjct: 61 QFSSKXXXXXXXXXXGTEFEPTSVC 85

[Close]

BLAST of Carg06182 vs. NCBI nr
Match: XP_004134108.1 (PREDICTED: uncharacterized protein LOC101220013 [Cucumis sativus] >KGN56927.1 hypothetical protein Csa_3G144170 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 4.9e-23
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKP-IVGEP 60
          MPFPMKIQPIDIDV+TVREQVRT++AKP+FKSRLRRLFDRPFPSVLR S VEKP IVGE 
Sbjct: 1  MPFPMKIQPIDIDVQTVREQVRTESAKPVFKSRLRRLFDRPFPSVLRISAVEKPIIVGES 60

Query: 61 AQFG-------RVTEFEPSSVC 75
          AQF          TE EPSSVC
Sbjct: 61 AQFSSKDXXXXXXTELEPSSVC 82

[Close]

BLAST of Carg06182 vs. TAIR10
Match: AT3G22970.1 (Protein of unknown function (DUF506) )

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-15
Identity = 47/80 (58.75%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSS---TVEKPIV- 60
          MPF MKIQPIDID      +  +   KP+ KSRL+RLFDRPF +VLR+S   T EKP V 
Sbjct: 1  MPFTMKIQPIDIDSSPTVARAESGN-KPVLKSRLKRLFDRPFTNVLRNSTTTTTEKPFVV 60

Query: 61 --GEPAQFGRVTEFEPSSVC 75
            GE    G VTEFEPSSVC
Sbjct: 61 TGGEVQCGGVVTEFEPSSVC 79

[Close]

BLAST of Carg06182 vs. TAIR10
Match: AT2G38820.2 (Protein of unknown function (DUF506) )

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-06
Identity = 31/74 (41.89%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MP  MKIQPID +     E    +T + + KSRL+RLF+R F +   S       V  P 
Sbjct: 1  MPLHMKIQPID-ESDVSEEVPYPETMRQMPKSRLKRLFERQFTNKNVSEKFTGSDVEAPL 60

Query: 61 QFGRVTEFEPSSVC 75
            G   +FEPSSVC
Sbjct: 61 SRGNSGDFEPSSVC 73

[Close]

BLAST of Carg06182 vs. TAIR10
Match: AT4G14620.1 (Protein of unknown function (DUF506) )

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-05
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 5  MKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPAQFGR 64
          MKIQPI+ D+   R +  T   KP+ KSRL+RL DRPF  +  S++ +  I G+    G 
Sbjct: 2  MKIQPINNDLPANRVESST---KPVLKSRLKRLLDRPFTRI--SNSEKLLISGDGVVAG- 61

Query: 65 VTEFEPS 72
           TEFEPS
Sbjct: 62 -TEFEPS 61

[Close]

BLAST of Carg06182 vs. TrEMBL
Match: tr|A0A0A0L8I2|A0A0A0L8I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144170 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKP-IVGEP 60
          MPFPMKIQPIDIDV+TVREQVRT++AKP+FKSRLRRLFDRPFPSVLR S VEKP IVGE 
Sbjct: 1  MPFPMKIQPIDIDVQTVREQVRTESAKPVFKSRLRRLFDRPFPSVLRISAVEKPIIVGES 60

Query: 61 AQFG-------RVTEFEPSSVC 75
          AQF          TE EPSSVC
Sbjct: 61 AQFSSKDXXXXXXTELEPSSVC 82

[Close]

BLAST of Carg06182 vs. TrEMBL
Match: tr|A0A1S3AXG0|A0A1S3AXG0_CUCME (uncharacterized protein LOC103483661 OS=Cucumis melo OX=3656 GN=LOC103483661 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.2e-23
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPI-VGEP 60
          MPFPMKIQPIDIDV+T REQVRT++AKP+FKSRLRRLFDRPFPSVLR S VEKPI VGE 
Sbjct: 1  MPFPMKIQPIDIDVQTAREQVRTESAKPVFKSRLRRLFDRPFPSVLRISAVEKPITVGES 60

Query: 61 AQF------GRVTEFEPSSVC 75
          AQF      G  T+ EPSSVC
Sbjct: 61 AQFSSKDGGGGGTDLEPSSVC 81

[Close]

BLAST of Carg06182 vs. TrEMBL
Match: tr|A0A2N9IZE6|A0A2N9IZE6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57566 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 53/79 (67.09%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MPFPMKIQPIDID +  RE VR+DT KP+ KSRL+RLFDR FPSVLR S+ EKP  G  A
Sbjct: 1  MPFPMKIQPIDIDSQAFREPVRSDTVKPVLKSRLKRLFDRQFPSVLRISSAEKPSGGGEA 60

Query: 61 Q-----FGRVTEFEPSSVC 75
          Q      G  TEFEPSSVC
Sbjct: 61 QQYSNKDGGQTEFEPSSVC 79

[Close]

BLAST of Carg06182 vs. TrEMBL
Match: tr|W9RXN9|W9RXN9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013355 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 1  MPFPMKIQPIDIDVRTVREQVRTDTAKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVGEPA 60
          MPFPMKIQP+D D  T RE VR D+AKP+ KSR RRLFDR FPSVL++S+ EKP   EP 
Sbjct: 1  MPFPMKIQPLDTDSETAREPVRADSAKPMLKSRFRRLFDRQFPSVLKNSSAEKP---EPP 60

Query: 61 QF----------------GRVTEFEPSSVC 75
          Q+                G V EFEPSSVC
Sbjct: 61 QYAAAATATAVANSFKDGGTVAEFEPSSVC 87

[Close]

BLAST of Carg06182 vs. TrEMBL
Match: tr|A0A2P6QPV0|A0A2P6QPV0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0388891 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16
Identity = 57/115 (49.57%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MPFPMKIQPIDIDVRTVREQVRTDT-AKPLFKSRLRRLFDRPFPSVLRSSTVEKPIVG-- 60
           MPFPMKIQPIDID   VRE VR D+ AKP+ KSRLRRLFDR FPSVLR S+ EKP V   
Sbjct: 1   MPFPMKIQPIDIDSEAVREPVRIDSAAKPVLKSRLRRLFDRQFPSVLRISSTEKPTVAGG 60

Query: 61  -----EPAQFGRVTEFEPSSVCFRATHHTHFSQYEVEAIERKYKPSGVPRWLCEC 108
                       + EFEPSSVC          Q  +E    K + +   R  C C
Sbjct: 61  DFNKDXXXXXXAIAEFEPSSVCL-----AKMVQNFLEETNEKQQATKCGRNRCNC 110

The following BLAST results are available for this feature:

BLAST of Carg06182 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974410.1	1.3e-31	97.30	uncharacterized protein LOC111473084 [Cucurbita maxima]	[more]
XP_023539817.1	1.3e-31	97.30	uncharacterized protein LOC111800384 [Cucurbita pepo subsp. pepo]	[more]
XP_022937081.1	5.4e-30	94.59	uncharacterized protein LOC111443488 [Cucurbita moschata]	[more]
XP_022138190.1	5.2e-25	74.12	uncharacterized protein LOC111009423 [Momordica charantia]	[more]
XP_004134108.1	4.9e-23	76.83	PREDICTED: uncharacterized protein LOC101220013 [Cucumis sativus] >KGN56927.1 hy...	[more]

BLAST of Carg06182 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22970.1	7.8e-15	58.75	Protein of unknown function (DUF506)	[more]
AT2G38820.2	3.9e-06	41.89	Protein of unknown function (DUF506)	[more]
AT4G14620.1	4.3e-05	46.27	Protein of unknown function (DUF506)	[more]

BLAST of Carg06182 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06182 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8I2\|A0A0A0L8I2_CUCSA	3.2e-23	76.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144170 PE=4 SV=1	[more]
tr\|A0A1S3AXG0\|A0A1S3AXG0_CUCME	7.2e-23	76.54	uncharacterized protein LOC103483661 OS=Cucumis melo OX=3656 GN=LOC103483661 PE=...	[more]
tr\|A0A2N9IZE6\|A0A2N9IZE6_FAGSY	9.1e-18	67.09	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57566 PE=4 SV=1	[more]
tr\|W9RXN9\|W9RXN9_9ROSA	1.7e-16	56.67	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013355 PE=4 SV=1	[more]
tr\|A0A2P6QPV0\|A0A2P6QPV0_ROSCH	8.5e-16	49.57	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0388891 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006502	PDDEXK-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06182-RA	Carg06182-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006502	Protein of unknown function PDDEXK-like	PANTHER	PTHR31579	FAMILY NOT NAMED	coord: 3..81
None	No IPR available	PANTHER	PTHR31579:SF5	SUBFAMILY NOT NAMED	coord: 3..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06182	Cla97C05G085800	Watermelon (97103) v2	carwmbB1008
Carg06182	Cla97C06G116100	Watermelon (97103) v2	carwmbB1009
Carg06182	Cla97C07G128870	Watermelon (97103) v2	carwmbB1012
Carg06182	Bhi01G000537	Wax gourd	carwgoB1119
Carg06182	Bhi05G000203	Wax gourd	carwgoB1124

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06182	Carg10057	Silver-seed gourd	carcarB266
Carg06182	Carg16598	Silver-seed gourd	carcarB274
Carg06182	Carg15877	Silver-seed gourd	carcarB349
Carg06182	Carg08991	Silver-seed gourd	carcarB610

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06182	Silver-seed gourd	carcarB136
Carg06182	Cucumber (Gy14) v1	carcgyB1077
Carg06182	Cucumber (Gy14) v2	carcgybB0945
Carg06182	Cucumber (Gy14) v2	carcgybB0948
Carg06182	Cucumber (Gy14) v1	carcgyB1081
Carg06182	Cucurbita maxima (Rimu)	carcmaB1320
Carg06182	Cucurbita maxima (Rimu)	carcmaB1321
Carg06182	Cucurbita maxima (Rimu)	carcmaB1325
Carg06182	Cucurbita maxima (Rimu)	carcmaB1327
Carg06182	Cucurbita maxima (Rimu)	carcmaB1328
Carg06182	Cucurbita moschata (Rifu)	carcmoB1284
Carg06182	Cucurbita moschata (Rifu)	carcmoB1285
Carg06182	Cucurbita moschata (Rifu)	carcmoB1288
Carg06182	Cucurbita moschata (Rifu)	carcmoB1289
Carg06182	Cucurbita moschata (Rifu)	carcmoB1290
Carg06182	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06182	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06182	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06182	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06182	Wild cucumber (PI 183967)	carcpiB0998
Carg06182	Wild cucumber (PI 183967)	carcpiB0995
Carg06182	Cucumber (Chinese Long) v2	carcuB0974
Carg06182	Cucumber (Chinese Long) v2	carcuB0975
Carg06182	Cucumber (Chinese Long) v3	carcucB1001
Carg06182	Cucumber (Chinese Long) v3	carcucB1003
Carg06182	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06182	Bottle gourd (USVL1VR-Ls)	carlsiB877
Carg06182	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06182	Melon (DHL92) v3.5.1	carmeB0940
Carg06182	Melon (DHL92) v3.5.1	carmeB0941
Carg06182	Melon (DHL92) v3.6.1	carmedB0947
Carg06182	Watermelon (Charleston Gray)	carwcgB0934
Carg06182	Watermelon (Charleston Gray)	carwcgB0935
Carg06182	Watermelon (Charleston Gray)	carwcgB0936
Carg06182	Watermelon (97103) v1	carwmB0962
Carg06182	Watermelon (97103) v1	carwmB0959
Carg06182	Watermelon (97103) v1	carwmB0961
Carg06182	Watermelon (97103) v2	carwmbB1013
Carg06182	Wax gourd	carwgoB1114