Carg06006 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06006
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	maternal effect embryo arrest 60
Location	Cucurbita_argyrosperma_scaffold_026 : 645745 .. 646263 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGACCGGCACCAACATTCACATGTCCGCCCTAGACGGCATCGTAAACGTCAATTCCATGTTCACTCTGGCCGTCTTCTTAGGCTTAGCCTGGAACCCCAACGACCCGACGAACAATCTGGTCGAAAGCCCTAATTGCTTGGCCGCCCCCAACGTCGCCGAGAATCTGGTAGCCTTCCATGTCTATTCCTTCAGCTCCTTCCTCTTCTCCAGCTTAATCGCCCTCGGCCTTAAGCAGGCCATCCGGATCTCCAAAACCCCCTTCTATCACCCCACCGAGTTCTTCGTTCGCGTCAACAAAACGGCCGTCCGAATCGGGATGCTGGTTTCCGGAATCGGCTCGGTTTGCGGCTGTGGATTCCTCATGATGGCGCTTATCAATGTTGTCCAGATCAAACTTGGTACTCTGAGCTGCGGCAGCTCTCAGACTTACGCGGCGGTGGTTCCGCTCGTGATTTTGGTTCCATTTGCCCTTGTGATTTACATCTGCCTTGTTTCTTACGCTTTTATCAATTAG

mRNA sequence

ATGCCGACCGGCACCAACATTCACATGTCCGCCCTAGACGGCATCGTAAACGTCAATTCCATGTTCACTCTGGCCGTCTTCTTAGGCTTAGCCTGGAACCCCAACGACCCGACGAACAATCTGGTCGAAAGCCCTAATTGCTTGGCCGCCCCCAACGTCGCCGAGAATCTGGTAGCCTTCCATGTCTATTCCTTCAGCTCCTTCCTCTTCTCCAGCTTAATCGCCCTCGGCCTTAAGCAGGCCATCCGGATCTCCAAAACCCCCTTCTATCACCCCACCGAGTTCTTCGTTCGCGTCAACAAAACGGCCGTCCGAATCGGGATGCTGGTTTCCGGAATCGGCTCGGTTTGCGGCTGTGGATTCCTCATGATGGCGCTTATCAATGTTGTCCAGATCAAACTTGGTACTCTGAGCTGCGGCAGCTCTCAGACTTACGCGGCGGTGGTTCCGCTCGTGATTTTGGTTCCATTTGCCCTTGTGATTTACATCTGCCTTGTTTCTTACGCTTTTATCAATTAG

Coding sequence (CDS)

ATGCCGACCGGCACCAACATTCACATGTCCGCCCTAGACGGCATCGTAAACGTCAATTCCATGTTCACTCTGGCCGTCTTCTTAGGCTTAGCCTGGAACCCCAACGACCCGACGAACAATCTGGTCGAAAGCCCTAATTGCTTGGCCGCCCCCAACGTCGCCGAGAATCTGGTAGCCTTCCATGTCTATTCCTTCAGCTCCTTCCTCTTCTCCAGCTTAATCGCCCTCGGCCTTAAGCAGGCCATCCGGATCTCCAAAACCCCCTTCTATCACCCCACCGAGTTCTTCGTTCGCGTCAACAAAACGGCCGTCCGAATCGGGATGCTGGTTTCCGGAATCGGCTCGGTTTGCGGCTGTGGATTCCTCATGATGGCGCTTATCAATGTTGTCCAGATCAAACTTGGTACTCTGAGCTGCGGCAGCTCTCAGACTTACGCGGCGGTGGTTCCGCTCGTGATTTTGGTTCCATTTGCCCTTGTGATTTACATCTGCCTTGTTTCTTACGCTTTTATCAATTAG

Protein sequence

MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN

Homology

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BLAST of Carg06006 vs. NCBI nr
Match: XP_022990564.1 (uncharacterized protein LOC111487406 [Cucurbita maxima] >XP_023515774.1 uncharacterized protein LOC111779812 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 4.1e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF
Sbjct: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 172

[Close]

BLAST of Carg06006 vs. NCBI nr
Match: XP_022962637.1 (uncharacterized protein LOC111463051 [Cucurbita moschata])

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLA PNVAENLVAF
Sbjct: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLATPNVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 172

[Close]

BLAST of Carg06006 vs. NCBI nr
Match: XP_022134461.1 (uncharacterized protein LOC111006700 [Momordica charantia])

HSP 1 Score: 287.3 bits (734), Expect = 3.3e-74
Identity = 147/172 (85.47%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MP GT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLV++PNCLAAP++AENLVAF
Sbjct: 54  MPAGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVQNPNCLAAPSIAENLVAF 113

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEFFVRVNK+A+RIGML+SGIGSVCGCG
Sbjct: 114 HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFFVRVNKSALRIGMLISGIGSVCGCG 173

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVIL             YAFIN
Sbjct: 174 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVILXXXXXXXXXXXXXYAFIN 225

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BLAST of Carg06006 vs. NCBI nr
Match: XP_004138443.1 (PREDICTED: uncharacterized protein LOC101208865 [Cucumis sativus] >KGN45754.1 hypothetical protein Csa_6G008850 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 1.5e-71
Identity = 143/172 (83.14%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SPNCLA P+VA NLV+F
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPNCLAGPSVAANLVSF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRI+K+PFYHPTEFF+RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRIAKSPFYHPTEFFIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVI               AFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVIXXXXXXXXXXXXXXXAFIN 172

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BLAST of Carg06006 vs. NCBI nr
Match: XP_008441411.1 (PREDICTED: uncharacterized protein LOC103485537 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 143/172 (83.14%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SP+CLA P+VA NLVAF
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPSCLAGPSVAANLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEF +RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFLIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVI               AFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVIXXXXXXXXXXXXXXXAFIN 172

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BLAST of Carg06006 vs. TAIR10
Match: AT5G05950.1 (maternal effect embryo arrest 60)

HSP 1 Score: 224.6 bits (571), Expect = 4.8e-59
Identity = 120/173 (69.36%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 5   TNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYS 64
           T+IH++ALDGIVNVNS+FTLAVF+GLAWNP DP N+LV  PNC+    +AENLVAFHVYS
Sbjct: 3   TSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVYS 62

Query: 65  FSSFLFSSLIALGLKQAIRISKTPFYH------PTEFFVRVNKTAVRIGMLVSGIGSVCG 124
           F+SFLFSSLIALGLKQA+R++    +H      P  ++  VNKTA+R GM+ SG+GSVCG
Sbjct: 63  FASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYY--VNKTALRFGMVTSGLGSVCG 122

Query: 125 CGFLMMALINVVQIKLGTLSCGSS-QTYAAVVPLVILVPFALVIYICLVSYAF 171
           CGFLM+ALINVVQIKLGTL CG+S  TYAAVVPLVILVP AL IY+ L+ YAF
Sbjct: 123 CGFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAF 173

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BLAST of Carg06006 vs. TAIR10
Match: AT3G07510.1 (unknown protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-32
Identity = 80/166 (48.19%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 5   TNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYS 64
           T++H+SALDG+VNVNS+FT+AVF+GL+       ++L +  +C A+ +VA+ L+ F V S
Sbjct: 24  TSVHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASADVAKKLLVFEVVS 83

Query: 65  FSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLMM 124
           FS FLFSSL+A GLK A+ +  +   +   F   +N   +R GM+ S +GSV GC FLM+
Sbjct: 84  FSFFLFSSLVAQGLKLALNLLNSKDVNEI-FRAHINIKVLRWGMMASAVGSVMGCLFLML 143

Query: 125 ALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAF 171
           +++NV+QI+LG LSCGS     AV  LV LV  AL+IYI    YAF
Sbjct: 144 SMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187

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BLAST of Carg06006 vs. TAIR10
Match: AT3G46890.1 (BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1))

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-28
Identity = 84/169 (49.70%), Postives = 110/169 (65.09%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPN--DPTNNLVESPN----CLAA--PN 60
           +PT T IH++A+DGIVNVNS+F+LA+FLGL  + N   P ++     +    C++A  P 
Sbjct: 16  LPT-TLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPA 75

Query: 61  VAENLVAFHVYSFSSFLFSSLIALGLKQAIRISKTPFYH---PTEFFV------RVNKTA 120
           +AE LV+ HVYSFS FLFSSLIA+ LKQAIR + T         E  V      RVN  A
Sbjct: 76  LAERLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLAA 135

Query: 121 VRIGMLVSGIGSVCGCGFLMMALINVVQIKLGTLSCGSS-QTYAAVVPL 152
           +R+G++ S + SV GCGFL MAL+++VQIKLG L C  S    AA+VPL
Sbjct: 136 LRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPL 183

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BLAST of Carg06006 vs. TAIR10
Match: AT2G01580.1 (unknown protein)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-26
Identity = 68/162 (41.98%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 10  SALDGIVNVNSMFTLAVFLGLAWN-PNDPTNNLVESPNCLAAPNVAENLVAFHVYSFSSF 69
           +ALDGIV+ NS+FT+AVF+G++++ P+D T  L +   C A  +V  +LV F V SF+ F
Sbjct: 31  TALDGIVSANSLFTVAVFVGISFDQPSDLT--LTDRTECSAGRDVERDLVVFEVISFAFF 90

Query: 70  LFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLMMALIN 129
           LFSSL+A G+K AI +  +       F   +N+  +R G++ +  GS+ GC FL++++++
Sbjct: 91  LFSSLVAQGMKLAINLLNSKETDEV-FKANINRDVLRFGVVGAAGGSILGCVFLLLSIVD 150

Query: 130 VVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAF 171
           V+Q++LG LSCG++     V+ LV+LV  AL +YI  V Y+F
Sbjct: 151 VIQLRLGLLSCGNALAIHTVLVLVVLVSSALSVYIFTVFYSF 189

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BLAST of Carg06006 vs. TrEMBL
Match: tr|A0A0A0KA88|A0A0A0KA88_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008850 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.0e-71
Identity = 143/172 (83.14%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SPNCLA P+VA NLV+F
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPNCLAGPSVAANLVSF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRI+K+PFYHPTEFF+RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRIAKSPFYHPTEFFIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVI               AFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVIXXXXXXXXXXXXXXXAFIN 172

[Close]

BLAST of Carg06006 vs. TrEMBL
Match: tr|A0A1S3B446|A0A1S3B446_CUCME (uncharacterized protein LOC103485537 OS=Cucumis melo OX=3656 GN=LOC103485537 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.9e-71
Identity = 143/172 (83.14%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SP+CLA P+VA NLVAF
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPSCLAGPSVAANLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEF +RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFLIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVI               AFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVIXXXXXXXXXXXXXXXAFIN 172

[Close]

BLAST of Carg06006 vs. TrEMBL
Match: tr|A0A2N9JAG4|A0A2N9JAG4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61496 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-65
Identity = 128/170 (75.29%), Postives = 147/170 (86.47%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MP GT++H++ALDGIVNVNS+FTLAVFLGL WNP+DP N+L     C   P+VAENLVAF
Sbjct: 1   MPVGTSVHITALDGIVNVNSLFTLAVFLGLTWNPSDPNNSLNLDSTCTPGPSVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIAL LKQAIRI++TP YHP EFF R+NK+ +R+GMLVSG+GS CGCG
Sbjct: 61  HVYSFSSFLFSSLIALALKQAIRITRTPSYHPGEFFFRINKSILRVGMLVSGVGSFCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAF 171
           FLMMAL+NVVQIKLGT SCGSS T+AAVVPL ILVP AL+IY C+V YAF
Sbjct: 121 FLMMALVNVVQIKLGTFSCGSSATFAAVVPLFILVPIALLIYACVVMYAF 170

[Close]

BLAST of Carg06006 vs. TrEMBL
Match: tr|A0A2P5EQ22|A0A2P5EQ22_9ROSA (Maternal effect embryo arrest OS=Trema orientalis OX=63057 GN=TorRG33x02_166120 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.2e-65
Identity = 123/169 (72.78%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 4   GTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVY 63
           GT++H++ALDGIVNVNS+FTLAVFLGL WNP DPTN+L+++P+C   P VAE+L+AFHVY
Sbjct: 6   GTSVHITALDGIVNVNSLFTLAVFLGLTWNPTDPTNSLIDNPSCNPGPKVAEDLIAFHVY 65

Query: 64  SFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLM 123
           SFSSFLFSSLIA+GLKQ IRI ++P YHP  F  R+N++ +R+GMLVSG+GSVCGCGFLM
Sbjct: 66  SFSSFLFSSLIAVGLKQGIRICRSPSYHPVGFLCRINRSVLRVGMLVSGVGSVCGCGFLM 125

Query: 124 MALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           +ALINVVQIKLGTL CGSS TYAA+VPLVI VP AL+IYIC+V YAF +
Sbjct: 126 LALINVVQIKLGTLGCGSSHTYAAIVPLVIFVPAALLIYICIVLYAFFS 174

[Close]

BLAST of Carg06006 vs. TrEMBL
Match: tr|A0A2P5C6B3|A0A2P5C6B3_PARAD (Maternal effect embryo arrest OS=Parasponia andersonii OX=3476 GN=PanWU01x14_180920 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.6e-64
Identity = 122/169 (72.19%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 4   GTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVY 63
           GT++H++ALDGIVNVNS+FTLAVFLGL WNP DP N+L+++P+C   P VAE+L+AFHVY
Sbjct: 25  GTSVHITALDGIVNVNSLFTLAVFLGLTWNPTDPNNSLIDNPSCNPGPKVAEDLIAFHVY 84

Query: 64  SFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLM 123
           SFSSFLFSSLIA+GLKQ IRI ++P YHP  F  R+N++ +R+GMLVSG+GSVCGCGFLM
Sbjct: 85  SFSSFLFSSLIAVGLKQGIRICRSPAYHPAGFLCRINRSVLRVGMLVSGVGSVCGCGFLM 144

Query: 124 MALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           +ALINVVQIKLGTL CGSS TYAA+VPLVI VP AL+IYIC+V YAF +
Sbjct: 145 LALINVVQIKLGTLGCGSSHTYAAIVPLVIFVPAALLIYICIVLYAFFS 193

The following BLAST results are available for this feature:

BLAST of Carg06006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990564.1	4.1e-88	100.00	uncharacterized protein LOC111487406 [Cucurbita maxima] >XP_023515774.1 uncharac...	[more]
XP_022962637.1	1.2e-87	99.42	uncharacterized protein LOC111463051 [Cucurbita moschata]	[more]
XP_022134461.1	3.3e-74	85.47	uncharacterized protein LOC111006700 [Momordica charantia]	[more]
XP_004138443.1	1.5e-71	83.14	PREDICTED: uncharacterized protein LOC101208865 [Cucumis sativus] >KGN45754.1 hy...	[more]
XP_008441411.1	5.9e-71	83.14	PREDICTED: uncharacterized protein LOC103485537 [Cucumis melo]	[more]

BLAST of Carg06006 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05950.1	4.8e-59	69.36	maternal effect embryo arrest 60	[more]
AT3G07510.1	1.7e-32	48.19	unknown protein	[more]
AT3G46890.1	2.0e-28	49.70	BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TA...	[more]
AT2G01580.1	4.1e-26	41.98	unknown protein	[more]

BLAST of Carg06006 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06006 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KA88\|A0A0A0KA88_CUCSA	1.0e-71	83.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008850 PE=4 SV=1	[more]
tr\|A0A1S3B446\|A0A1S3B446_CUCME	3.9e-71	83.14	uncharacterized protein LOC103485537 OS=Cucumis melo OX=3656 GN=LOC103485537 PE=...	[more]
tr\|A0A2N9JAG4\|A0A2N9JAG4_FAGSY	1.4e-65	75.29	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61496 PE=4 SV=1	[more]
tr\|A0A2P5EQ22\|A0A2P5EQ22_9ROSA	4.2e-65	72.78	Maternal effect embryo arrest OS=Trema orientalis OX=63057 GN=TorRG33x02_166120 ...	[more]
tr\|A0A2P5C6B3\|A0A2P5C6B3_PARAD	1.6e-64	72.19	Maternal effect embryo arrest OS=Parasponia andersonii OX=3476 GN=PanWU01x14_180...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06006-RA	Carg06006-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33430	FAMILY NOT NAMED	coord: 3..171
None	No IPR available	PANTHER	PTHR33430:SF2	SUBFAMILY NOT NAMED	coord: 3..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06006	Cla006559	Watermelon (97103) v1	carwmB0024
Carg06006	Csa6G008850	Cucumber (Chinese Long) v2	carcuB0023
Carg06006	MELO3C008255	Melon (DHL92) v3.5.1	carmeB0023
Carg06006	CSPI06G01350	Wild cucumber (PI 183967)	carcpiB0024
Carg06006	Cucsa.136330	Cucumber (Gy14) v1	carcgyB0019
Carg06006	CmaCh04G029330	Cucurbita maxima (Rimu)	carcmaB0033
Carg06006	CmoCh04G030550	Cucurbita moschata (Rifu)	carcmoB0033
Carg06006	Lsi03G003450	Bottle gourd (USVL1VR-Ls)	carlsiB017
Carg06006	Cp4.1LG01g25370	Cucurbita pepo (Zucchini)	carcpeB0034
Carg06006	CsGy6G001400	Cucumber (Gy14) v2	carcgybB0023
Carg06006	MELO3C008255.2	Melon (DHL92) v3.6.1	carmedB0024
Carg06006	CsaV3_6G001480	Cucumber (Chinese Long) v3	carcucB0024
Carg06006	Bhi04G001929	Wax gourd	carwgoB0022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06006	Silver-seed gourd	carcarB016
Carg06006	Silver-seed gourd	carcarB020
Carg06006	Silver-seed gourd	carcarB023
Carg06006	Silver-seed gourd	carcarB025
Carg06006	Silver-seed gourd	carcarB026
Carg06006	Cucumber (Gy14) v2	carcgybB0018
Carg06006	Cucumber (Gy14) v1	carcgyB0022
Carg06006	Cucurbita maxima (Rimu)	carcmaB0028
Carg06006	Cucurbita maxima (Rimu)	carcmaB0030
Carg06006	Cucurbita maxima (Rimu)	carcmaB0031
Carg06006	Cucurbita maxima (Rimu)	carcmaB0034
Carg06006	Cucurbita maxima (Rimu)	carcmaB0035
Carg06006	Cucurbita moschata (Rifu)	carcmoB0029
Carg06006	Cucurbita moschata (Rifu)	carcmoB0031
Carg06006	Cucurbita moschata (Rifu)	carcmoB0034
Carg06006	Cucurbita pepo (Zucchini)	carcpeB0031
Carg06006	Cucurbita pepo (Zucchini)	carcpeB0035
Carg06006	Cucurbita pepo (Zucchini)	carcpeB0036
Carg06006	Wild cucumber (PI 183967)	carcpiB0019
Carg06006	Cucumber (Chinese Long) v2	carcuB0019
Carg06006	Cucumber (Chinese Long) v3	carcucB0019
Carg06006	Bottle gourd (USVL1VR-Ls)	carlsiB020
Carg06006	Melon (DHL92) v3.5.1	carmeB0024
Carg06006	Melon (DHL92) v3.6.1	carmedB0025
Carg06006	Watermelon (Charleston Gray)	carwcgB0018
Carg06006	Watermelon (Charleston Gray)	carwcgB0019
Carg06006	Watermelon (Charleston Gray)	carwcgB0025
Carg06006	Watermelon (97103) v1	carwmB0017
Carg06006	Watermelon (97103) v2	carwmbB0014
Carg06006	Watermelon (97103) v2	carwmbB0015
Carg06006	Watermelon (97103) v2	carwmbB0022