Carg05999 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05999
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	L-type lectin-domain containing receptor kinase VIII.2-like
Location	Cucurbita_argyrosperma_scaffold_026 : 610055 .. 610432 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATTTCTCTTCTCCATTGCTTTTCTCTGTTTTCCTCTTCTCATTTCTTCACCCCATTTCTTCATTCAACCGTCGATCCCTCCCCAAACAACCCAATTTCGATCCCCACATTGCCCTCATCGGAGACGCCGTTCTTGTCGACGGCGACGGTCACGGAGACTGCGGCGATTCTTTCGTCAAACTGACCCGCCCTGTCGCTTCCAGCTTTGGCCTTCTCTTGCACAACAAACCCTTGAAGCTTCACGGTTCCACGTCGTTTTATACCCAGTTCACCTTCGCTGTCTCGCCGGACAACGGGGATGGCATCGTTCTTTCGCTTTTTCCCGGTGGGGGTTTTCCCGACGAAATCTCCCCGGAAAAAATGGCTTCATAG

mRNA sequence

ATGGTTGATTTCTCTTCTCCATTGCTTTTCTCTGTTTTCCTCTTCTCATTTCTTCACCCCATTTCTTCATTCAACCGTCGATCCCTCCCCAAACAACCCAATTTCGATCCCCACATTGCCCTCATCGGAGACGCCGTTCTTGTCGACGGCGACGGTCACGGAGACTGCGGCGATTCTTTCGTCAAACTGACCCGCCCTGTCGCTTCCAGCTTTGGCCTTCTCTTGCACAACAAACCCTTGAAGCTTCACGGTTCCACGTCGTTTTATACCCAGTTCACCTTCGCTGTCTCGCCGGACAACGGGGATGGCATCGTTCTTTCGCTTTTTCCCGGTGGGGGTTTTCCCGACGAAATCTCCCCGGAAAAAATGGCTTCATAG

Coding sequence (CDS)

ATGGTTGATTTCTCTTCTCCATTGCTTTTCTCTGTTTTCCTCTTCTCATTTCTTCACCCCATTTCTTCATTCAACCGTCGATCCCTCCCCAAACAACCCAATTTCGATCCCCACATTGCCCTCATCGGAGACGCCGTTCTTGTCGACGGCGACGGTCACGGAGACTGCGGCGATTCTTTCGTCAAACTGACCCGCCCTGTCGCTTCCAGCTTTGGCCTTCTCTTGCACAACAAACCCTTGAAGCTTCACGGTTCCACGTCGTTTTATACCCAGTTCACCTTCGCTGTCTCGCCGGACAACGGGGATGGCATCGTTCTTTCGCTTTTTCCCGGTGGGGGTTTTCCCGACGAAATCTCCCCGGAAAAAATGGCTTCATAG

Protein sequence

MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSFVKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISPEKMAS

Homology

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BLAST of Carg05999 vs. NCBI nr
Match: XP_022961282.1 (uncharacterized protein LOC111461824 [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 3.6e-62
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MVDFSSPLLFSVFLFSFLHPISSFN RSLPKQPNFDPHIALIGDAVLVDGDGHGD GDSF
Sbjct: 1   MVDFSSPLLFSVFLFSFLHPISSFNLRSLPKQPNFDPHIALIGDAVLVDGDGHGDFGDSF 60

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP
Sbjct: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120

Query: 121 EK 123
           EK
Sbjct: 121 EK 122

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BLAST of Carg05999 vs. NCBI nr
Match: XP_023553507.1 (uncharacterized protein LOC111810901 [Cucurbita pepo subsp. pepo] >XP_023553516.1 uncharacterized protein LOC111810901 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 2.1e-57
Identity = 111/122 (90.98%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MVDFSSP LFSVF FSFLHPISSFN R+LPK+PNFDPHIALIGDAVLVDGDGHGDCGDSF
Sbjct: 1   MVDFSSPFLFSVFFFSFLHPISSFNLRALPKEPNFDPHIALIGDAVLVDGDGHGDCGDSF 60

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRPVASSFGLLLHNKPLKLHGSTSF TQFTFAVSPDNGDG+VLSLF GG FP +ISP
Sbjct: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFNTQFTFAVSPDNGDGLVLSLFRGGDFPHKISP 120

Query: 121 EK 123
           EK
Sbjct: 121 EK 122

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BLAST of Carg05999 vs. NCBI nr
Match: XP_008441637.1 (PREDICTED: uncharacterized protein LOC103485717 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 89/122 (72.95%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MV+FSS  LFS+FLF FLHPISSF   + PKQPNFDP ++LIGDA  V  D H + G SF
Sbjct: 1   MVNFSSQFLFSIFLFQFLHPISSF---TFPKQPNFDPQLSLIGDAAFVSTDAHVNGGASF 60

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRP+ASSFGLLLHNKPL +H STSF T FTF+VSP+NGDG+VLSLFPGG FPDE+SP
Sbjct: 61  VKLTRPIASSFGLLLHNKPLTIHESTSFNTHFTFSVSPENGDGLVLSLFPGGIFPDEVSP 119

Query: 121 EK 123
           EK
Sbjct: 121 EK 119

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BLAST of Carg05999 vs. NCBI nr
Match: XP_004138574.1 (PREDICTED: uncharacterized protein LOC101219233 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MV FSS  L S+FLF FLHPISSF   + PKQPNFDP ++LIGDA  V  D H   G SF
Sbjct: 1   MVHFSSQFLLSIFLFQFLHPISSF---TFPKQPNFDPQLSLIGDAAFVSTDAHLHGGASF 60

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRP+ASSFGLLLHNKPL +H STSF T FTF+VSP+NGDG++LSLFPGG FPDE+SP
Sbjct: 61  VKLTRPIASSFGLLLHNKPLTIHESTSFNTHFTFSVSPENGDGLILSLFPGGVFPDEVSP 119

Query: 121 EK 123
           EK
Sbjct: 121 EK 119

[Close]

BLAST of Carg05999 vs. NCBI nr
Match: KGN45764.1 (hypothetical protein Csa_6G009430 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MV FSS  L S+FLF FLHPISSF   + PKQPNFDP ++LIGDA  V  D H   G SF
Sbjct: 23  MVHFSSQFLLSIFLFQFLHPISSF---TFPKQPNFDPQLSLIGDAAFVSTDAHLHGGASF 82

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRP+ASSFGLLLHNKPL +H STSF T FTF+VSP+NGDG++LSLFPGG FPDE+SP
Sbjct: 83  VKLTRPIASSFGLLLHNKPLTIHESTSFNTHFTFSVSPENGDGLILSLFPGGVFPDEVSP 141

Query: 121 EK 123
           EK
Sbjct: 143 EK 141

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BLAST of Carg05999 vs. TrEMBL
Match: tr|A0A1S3B3V6|A0A1S3B3V6_CUCME (uncharacterized protein LOC103485717 OS=Cucumis melo OX=3656 GN=LOC103485717 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.3e-43
Identity = 89/122 (72.95%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MV+FSS  LFS+FLF FLHPISSF   + PKQPNFDP ++LIGDA  V  D H + G SF
Sbjct: 1   MVNFSSQFLFSIFLFQFLHPISSF---TFPKQPNFDPQLSLIGDAAFVSTDAHVNGGASF 60

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRP+ASSFGLLLHNKPL +H STSF T FTF+VSP+NGDG+VLSLFPGG FPDE+SP
Sbjct: 61  VKLTRPIASSFGLLLHNKPLTIHESTSFNTHFTFSVSPENGDGLVLSLFPGGIFPDEVSP 119

Query: 121 EK 123
           EK
Sbjct: 121 EK 119

[Close]

BLAST of Carg05999 vs. TrEMBL
Match: tr|A0A0A0KA99|A0A0A0KA99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009430 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MVDFSSPLLFSVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSF 60
           MV FSS  L S+FLF FLHPISSF   + PKQPNFDP ++LIGDA  V  D H   G SF
Sbjct: 23  MVHFSSQFLLSIFLFQFLHPISSF---TFPKQPNFDPQLSLIGDAAFVSTDAHLHGGASF 82

Query: 61  VKLTRPVASSFGLLLHNKPLKLHGSTSFYTQFTFAVSPDNGDGIVLSLFPGGGFPDEISP 120
           VKLTRP+ASSFGLLLHNKPL +H STSF T FTF+VSP+NGDG++LSLFPGG FPDE+SP
Sbjct: 83  VKLTRPIASSFGLLLHNKPLTIHESTSFNTHFTFSVSPENGDGLILSLFPGGVFPDEVSP 141

Query: 121 EK 123
           EK
Sbjct: 143 EK 141

[Close]

BLAST of Carg05999 vs. TrEMBL
Match: tr|A0A1U8LPV3|A0A1U8LPV3_GOSHI (L-type lectin-domain containing receptor kinase VIII.1-like OS=Gossypium hirsutum OX=3635 GN=LOC107929606 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 12  VFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSFVKLTRPVASSF 71
           +FLF    P+SSF   +L   P+FDPHI+L GDA + D       G S+V+LTRP A S 
Sbjct: 19  IFLFLTAKPLSSFAHSALGNNPSFDPHISLFGDARVED-------GSSYVQLTRPHAPSS 78

Query: 72  GLLLHNKPLKL------HGSTSFYTQFTFAVSPDNGDGIVLSLFPGG 113
           GLLL +KPLKL          SF T+F+F+++P N DG+   L P G
Sbjct: 79  GLLLLDKPLKLTMENNVGQPVSFSTEFSFSIAPGNCDGLAFVLIPNG 118

[Close]

BLAST of Carg05999 vs. TrEMBL
Match: tr|A0A2P5WNE8|A0A2P5WNE8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28054 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 12  VFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSFVKLTRPVASSF 71
           +FLF    P+SSF   +L   P+FDPHI+L GDA + D       G S+V+LTRP A S 
Sbjct: 19  IFLFLTAKPLSSFAHSALGNNPSFDPHISLFGDARVED-------GSSYVQLTRPHAPSS 78

Query: 72  GLLLHNKPLKL------HGSTSFYTQFTFAVSPDNGDGIVLSLFPGG 113
           GLLL +KPLKL          SF T+F+F+++P N DG+   L P G
Sbjct: 79  GLLLLDKPLKLTMENNVGQPVSFSTEFSFSIAPGNCDGLAFVLIPNG 118

[Close]

BLAST of Carg05999 vs. TrEMBL
Match: tr|M5XD15|M5XD15_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G244400 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 7   PLLF--SVFLFSFLHPISSFNRRSLPKQPNFDPHIALIGDAVLVDGDGHGDCGDSFVKLT 66
           PL+F  S F F  L PISS + +SL   PNFD  IAL GDA  VD         S+V +T
Sbjct: 12  PLIFLLSSFYFLTLQPISSSSLKSLNNNPNFDSEIALFGDAEPVD-------AGSYVNIT 71

Query: 67  RPVASSFGLLLHNKPLK-----LHGSTSFYTQFTFAVSPDNGDGIVLSL 109
           RP  SS GLLL  KP K     L   TSF T+FTF+++P +GDG++L L
Sbjct: 72  RPSVSSSGLLLRQKPFKFLDANLSSPTSFSTEFTFSMTPGSGDGLLLVL 113

The following BLAST results are available for this feature:

BLAST of Carg05999 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961282.1	3.6e-62	98.36	uncharacterized protein LOC111461824 [Cucurbita moschata]	[more]
XP_023553507.1	2.1e-57	90.98	uncharacterized protein LOC111810901 [Cucurbita pepo subsp. pepo] >XP_023553516....	[more]
XP_008441637.1	1.1e-42	72.95	PREDICTED: uncharacterized protein LOC103485717 [Cucumis melo]	[more]
XP_004138574.1	2.1e-41	71.31	PREDICTED: uncharacterized protein LOC101219233 [Cucumis sativus]	[more]
KGN45764.1	2.1e-41	71.31	hypothetical protein Csa_6G009430 [Cucumis sativus]	[more]

BLAST of Carg05999 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05999 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05999 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B3V6\|A0A1S3B3V6_CUCME	7.3e-43	72.95	uncharacterized protein LOC103485717 OS=Cucumis melo OX=3656 GN=LOC103485717 PE=...	[more]
tr\|A0A0A0KA99\|A0A0A0KA99_CUCSA	1.4e-41	71.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009430 PE=3 SV=1	[more]
tr\|A0A1U8LPV3\|A0A1U8LPV3_GOSHI	1.9e-14	45.79	L-type lectin-domain containing receptor kinase VIII.1-like OS=Gossypium hirsutu...	[more]
tr\|A0A2P5WNE8\|A0A2P5WNE8_GOSBA	1.9e-14	45.79	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28054 PE=3 SV...	[more]
tr\|M5XD15\|M5XD15_PRUPE	3.2e-14	48.62	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G244400 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013320	ConA-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05999-RA	Carg05999-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.60.120.200		coord: 23..121 e-value: 1.3E-6 score: 30.3
None	No IPR available	PANTHER	PTHR32401:SF3	SUBFAMILY NOT NAMED	coord: 2..108
None	No IPR available	PANTHER	PTHR32401	FAMILY NOT NAMED	coord: 2..108
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	SSF49899	Concanavalin A-like lectins/glucanases	coord: 35..116

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05999	Wax gourd	carwgoB0017
Carg05999	Wax gourd	carwgoB0022
Carg05999	Silver-seed gourd	carcarB016
Carg05999	Silver-seed gourd	carcarB020
Carg05999	Silver-seed gourd	carcarB022
Carg05999	Silver-seed gourd	carcarB023
Carg05999	Silver-seed gourd	carcarB025
Carg05999	Silver-seed gourd	carcarB026
Carg05999	Cucumber (Gy14) v2	carcgybB0018
Carg05999	Cucumber (Gy14) v2	carcgybB0023
Carg05999	Cucumber (Gy14) v1	carcgyB0019
Carg05999	Cucumber (Gy14) v1	carcgyB0022
Carg05999	Cucurbita maxima (Rimu)	carcmaB0028
Carg05999	Cucurbita maxima (Rimu)	carcmaB0030
Carg05999	Cucurbita maxima (Rimu)	carcmaB0031
Carg05999	Cucurbita maxima (Rimu)	carcmaB0033
Carg05999	Cucurbita maxima (Rimu)	carcmaB0034
Carg05999	Cucurbita maxima (Rimu)	carcmaB0035
Carg05999	Cucurbita moschata (Rifu)	carcmoB0029
Carg05999	Cucurbita moschata (Rifu)	carcmoB0031
Carg05999	Cucurbita moschata (Rifu)	carcmoB0033
Carg05999	Cucurbita moschata (Rifu)	carcmoB0034
Carg05999	Cucurbita pepo (Zucchini)	carcpeB0031
Carg05999	Cucurbita pepo (Zucchini)	carcpeB0034
Carg05999	Cucurbita pepo (Zucchini)	carcpeB0035
Carg05999	Cucurbita pepo (Zucchini)	carcpeB0036
Carg05999	Wild cucumber (PI 183967)	carcpiB0019
Carg05999	Wild cucumber (PI 183967)	carcpiB0024
Carg05999	Cucumber (Chinese Long) v2	carcuB0019
Carg05999	Cucumber (Chinese Long) v2	carcuB0023
Carg05999	Cucumber (Chinese Long) v3	carcucB0019
Carg05999	Cucumber (Chinese Long) v3	carcucB0024
Carg05999	Bottle gourd (USVL1VR-Ls)	carlsiB017
Carg05999	Bottle gourd (USVL1VR-Ls)	carlsiB020
Carg05999	Melon (DHL92) v3.5.1	carmeB0023
Carg05999	Melon (DHL92) v3.5.1	carmeB0024
Carg05999	Melon (DHL92) v3.6.1	carmedB0024
Carg05999	Melon (DHL92) v3.6.1	carmedB0025
Carg05999	Watermelon (Charleston Gray)	carwcgB0018
Carg05999	Watermelon (Charleston Gray)	carwcgB0019
Carg05999	Watermelon (Charleston Gray)	carwcgB0025
Carg05999	Watermelon (97103) v1	carwmB0017
Carg05999	Watermelon (97103) v1	carwmB0024
Carg05999	Watermelon (97103) v2	carwmbB0014
Carg05999	Watermelon (97103) v2	carwmbB0015
Carg05999	Watermelon (97103) v2	carwmbB0022