Carg05859 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05859
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	1-deoxy-D-xylulose-5-phosphate synthase
Location	Cucurbita_argyrosperma_scaffold_033 : 1492767 .. 1497944 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCTCAGCAGGCGAAGTATCGTTATGTTTTACATAATGCTGCCGTGACGGTTACTAATTCTAATGGGTGTCCGACAAAAGTTGAGCTACCAGCGAAGGCTCGCCCGACAGGAAAAGGGGTCCAGCGGTGTGCGAACTGTTTGGTGGGTCCATACTCGCACATATGGGCTGTGTGTAGAGTATATGGTGCACATCAAAGCTTCCCATTATAATAGTGTCGTTGGAAAAATAGATTGATATGATAGGTCCCGTCATTGTATTCGCATGTTGTTGCATTTAACCCCCAATAGTGGGGTCACTTACTGAAATACTCAAGCTACGCGTTACCTCTATTTCAGGTTAAGGCAAGACATTCTTGTACAGTTGACGATAACATTGCAACTCGATACCATGATACATGCATGGGGTAGTCGTATTATTTTTCTTAGACTTAGGCTAGAATAGGATGTTTTTTATTTAAACGTTCATTTATTTTATTTAGTCTTTTGTTCTGTAGTTTTCGAAAGTGTTTTTGAAACATGTAAGTCTATGGTCGTGTTTTAAGCTGAAGGTTATGTTTTATGAAAGTTTAAATGAAGTATTTCTACATTCAATGTTTATGATATGTATACAGTAGCGACCTTAAATTAAGTAGAAAATTTTGGGTCGTTACACGAGAAGACATACACCACTAATATATAATTTTCAAGGTGTCAACTTGATGGTGTTAATATAACACATGCGGAAGCAATTTGGATCTTAGGCACTCTTAGAACATCAATTATAGTAAATAACTAGCATGTTCATAAGTATTAAAACTCAAGGTGTTTGACTACTAACCTTTTGTAGTTCAAATTCCTTTTTCCTCAGGAACCGGTTTCGAACCACCACTAGTGTCTTCTCCATTATTGTCCGGCCTTAGAACGGGATTGTGGAATCCGGTGAGTGACTAAACTTAAGAGGGATTTAGTATTTATGAAGAGAGAGTTTGTGAGAGTTTTTCTCGAGGTTTTTCCAAGGGAGAAGTTACATGTACCTTGATCACTCTATTTATAAATCACATTTGCATGTTCATGCAGATTTGAGATCACCAAATTTTGACACTCAACATTTCACTCAATTGTTTGAGATTACATGGCAAGCATTTTGACACCTCAAAATTCCACTAACTAAAACATGGATTTTTCCATTAAGTAAAGTCAACTCTTCGTTTTAACTCAGCAATTAATTTGAATAATTAATTTCAAATTAAAGTAATATTAAAGGATTAATTAAACTATTTAATTAATATTTAATATTAATTCAAATGTCAATCCCAATCAATTCCGACACATATTTGATTAAAATATTTAAATCTTATTTAAATATTTTCGATTCTCTCTTTTTGTTTGATTCGTAAATAAAACAAAAATGCGGTTAAACATATCGTATATATGTAGCGCATATTCCCTAATTTGAATTCGAACACTTCGAACTCACTCATCACACTGTTTTATGGTTTAGTCCGATATGAGCTAGCAGATGGACCTAATGGACCTATAGATCATGGGCTCCAACGATCCAAGATTAATTGGTTAAACTCATTAACTTTGTTAACCAACATTTGTTAATTATTAGGACACTCCACTATAGCCTAGTAGTTGCACTCCCCTCACTACAGATATATTTCTGTCAATTTGATATAACCATGATTAATAAGTCGATCCTTCACAGGTTGTTCGTAACTAGAGCTAGGTCAATTTACCGTTTTACCCCTAAAGTTACTTCTTGTTCCTTAAGTTCCACTGATCCTCTAATGAACAATTGATTTGTGGTCCAACCACCAAACCGAATCCCTCTTGGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGTAGTCAGTAATTATGGGAACAACCTCTCTACTATCCCTAAAAGTGGATAGGAGTGAATTCTATCTTGCACCCTATGTCCCTAGCTATTCACCCAGTCTTACCCTTGAAATAGGAGGCTTATTGAGTCGGCGAACTCGGACCACTCTCACCCATGCAAATCTAAGGATAATTTTGAATAAACAGGAGTTTATAGTTAGCTCAGAATTAAGGTCGAGTTACCTAGGTCATCGAGTGAAAAATTCAGTCTCAAGAGTAGGTATTATAAAGTGTGAGTGATTTTCTTCATGGTCCGATCTTATGCAATACTCATTGCATAGGACGCCCCCACTCACATGTCTCTACATGTACAATTTAGTAATCACATTGTTTATATCATATACAAAAGTGGGCCGCATCCATAGTGTCCCGAGGATAAGGTACTCAACCTTATCCCTGTATTATAGATCATTTTGACTATATACTTGAATTTGATCCACTATTATATCTCTACATACAGTTAAGTAATCATATATAGCCAGAGTATTCTTAGTTTATTAGATTTAGATTAATGATCGTAATGAATAAACATCAATTATAACTTTATTGAAAATGAAATATGTTTTTATTTACAAACTATGAGTTTTAGGACATAAAACTTAATAGGAAATGCATCTCTATGTTGCTTTCCCACCATGCAAGCAGTGCATATTTTAGATGATTCTTTCAATTGGGGTAACCTTCTCACCATTTGCTTGTGTTGCAATGTTCTCTAAACCTTTGAAGCTTAGGTGCCCATATCTGCGATGCCAAAGATGAGTGTTGTCTTCTATAATTGTTTGGAAGCAAGTGGAGGTGTGTGGCGTGATTCGAGCAAGTAATATGAACATCCTATTCGCAGACATTGTTTTTTTGCATAATAAGCCCCTTCTTGGGATGATAGATTTTTCATTCTCCATGTTGTATCAAAATAGATACACTTCTTTCTTGTAGTTGTCCAAGACTTAAGATATTGTTTTTCATCCTAAAGCTCAGCATAATTTGCTTCCTTTTCCTATTGAGGACACTCATATAAAGTGTCCTAACTGATGACACTTATAACATTCAATTGTAGTTTTGTTGAATGGATGTCTACCTCTTCCTCTTCCTCTATCTCTTCCTCAAAAATCTTCACGAGTTCGATCAACTCCTCTTCCACTGAATCTATTATCGTATGTCACCTTTAGTGCTTGTTCATCACTTACACGTCCATTCAGTATTTACTCATGTACCAACAACCTACTTTGTAATTCATCGATTGTTAAAGTGTCCAAGTTATTAGACTCTTCAATGGAACATATAACATAGTCAAATCTTCAATAATCACAACTTGTTTCATGTGTTCGCCATGAATTTTCATTTTGTTTGCAATGGTGAGAGTTGGAGAAAAATATATATCAACACTCTCACCTTCTTTCATCTGTAGCTCTTTCCTAAGAGCTTGAAGTTGAGCTCTTTTGACTCTTGTGGAACCCTGGTACTTCTGCTTCATAGAGTCCCAAACTTGTTTGGCAGTACAGTATCTCTATTAAGGATCATTTCCATAATAGTTCGATCAATGGCTTGGAACAAATAATTCTTGACCTTCACGTCTTTCAACTTTTGGTCTGTAATTATTTTTTGTTGTGCTTCGGTAATCTCTACTCCCTCTGTTGCGGCAGGAATTCCGGTCTCCACCAAGCACCAATATTCCTTTGAACAAAGAAAAATTTTCATAAGCATAGACCAATGATCATAATGGAATTCCGGTTGAACGAAATTGATTTCAGCTGCCATATTTTGAATCTCTTTCAACTCACTCTTTAAGAAAAAAAAACTGCAGTTTCTTATTCTCACAATCAGGCCTATGAGGTTACTATGATACCAAAGGTTGTAAACACACAAATTAAAGCTTTGAAATCAATTGCATTATCAAACAAATGAACTTGTTGTTTACAGCCTTACAGACTAACAAATTTAGAAAGCATGACATTAGCCAACTCTAAAAATAGGAAAAACAACTACATCCTAAAGAAATGATAGTCATTTCAACCCTCGAGAAAATATTAGTATGACCATCCTTAACAAAGAAAAGAAAAAAAAATAGTAAGAGACAAGATTGTGAATATAATTAGGAGTAAAAAAAAAAAAAAAGAAAAAAAGAAACACAGTAATAGACAAGGGAAGATTGGTAATATGTGAACAAAAAAATAGTAAGAGACAGAGGAAAATTTTGAAGAAATCGTAGCCATTTCAACCCTAGAAAAAAGTCAGTATGAAGCCATTTCAACCCTAGAGAATATGTCTGCATGACATCTTTACCAAAGAAAAGAAAAAAAAATAATAAGAGACAGACAGGGAAGATTGTGAATATAATTAAAAGTAAGAAAAAAAAGAGAGAAACACTGTAATAGACAAAGTAAGATTGGTAATATATAAAAAAAAATAGTAAGAGACAAAGAGGAAAATTTTGAAGAAATGGTAGCCATTTCAACTCTAGAGACAAGGTCAGAACCATCTCTAACAAAGGAAAGAAATAAATGCTAGCCATTTTAACCTAGAGAAAAGGTCAGCATGACCATCTTTAACAAAGAAAAGAAAAAAAATAGTAAGAGGCAGGGAAATTGTGAATATAATTAAAAGTAAGAAAAAAAAAAAGAGAAACAGTAGAAGACGGGGAAAATTGTTAATATATATAAAAAAAAATAGTAGGAGACGGAGAGGAACATTGTGAATATAATTAAAAGAGAAATACAGTCAGAGACAAGGAAGATGGGTAATATATATATAAAAAAATAGTAAGAGAGAGAGTAAAATTGTGAATATAATTAAAAGCAATAAAAAAAAGAAAACACAGTAAAAATGTTAAAGGTATTAAACACGGGACAAGAAAATTGTAAAATGTTTAAGACAGTAAAAATGTCAGTATGAAACACAAGAAGAGAAAATTGTAAAATGTTAAAGGGTATTAAATGGTTTGAATGAAAATAATACTATAACAAACATATATAAATATTCAAAGGCAGCTCTCATCTATCCCATTTCCTTAGCTTAACCGGATCTTTAGATGATCATCATCTCAAGGTAATTCAAAATAGTTTCGTTTTGTTTCGTTTTATTCTACTAATACCAACTTAATTATGGTGCAGTCGAGAAGTATGGTTCTTCCCAATTGATAGATCAATCATGGATCACCACGAGACCAGATGGAAGAAGCGGGACTGTCGGCTGGACACATAGCTGGAACAGTGCTAACTCTTTTGGGAAGATCAAAAGAAGCTCTTTCAGTGCAAATTTCTGTAAGCAGGAAGCCAAGCTCTTAG

mRNA sequence

ATGTGTGCTCAGCAGGCGAAGTATCGTTATGTTTTACATAATGCTGCCGTGACGGTTACTAATTCTAATGGGTGTCCGACAAAAGTTGAGCTACCAGCGAAGGCTCGCCCGACAGGAAAAGGGGTCCAGCGGTGTGCGAACTGTTTGGTGGGTCCATACTCGCACATATGGGCTGTGTGTAGAGTATATGGAACCGGTTTCGAACCACCACTAGTGTCTTCTCCATTATTGTCCGGCCTTAGAACGGGATTGTGGAATCCGATCAATCATGGATCACCACGAGACCAGATGGAAGAAGCGGGACTGTCGGCTGGACACATAGCTGGAACAGTGCTAACTCTTTTGGGAAGATCAAAAGAAGCTCTTTCAGTGCAAATTTCTGTAAGCAGGAAGCCAAGCTCTTAG

Coding sequence (CDS)

ATGTGTGCTCAGCAGGCGAAGTATCGTTATGTTTTACATAATGCTGCCGTGACGGTTACTAATTCTAATGGGTGTCCGACAAAAGTTGAGCTACCAGCGAAGGCTCGCCCGACAGGAAAAGGGGTCCAGCGGTGTGCGAACTGTTTGGTGGGTCCATACTCGCACATATGGGCTGTGTGTAGAGTATATGGAACCGGTTTCGAACCACCACTAGTGTCTTCTCCATTATTGTCCGGCCTTAGAACGGGATTGTGGAATCCGATCAATCATGGATCACCACGAGACCAGATGGAAGAAGCGGGACTGTCGGCTGGACACATAGCTGGAACAGTGCTAACTCTTTTGGGAAGATCAAAAGAAGCTCTTTCAGTGCAAATTTCTGTAAGCAGGAAGCCAAGCTCTTAG

Protein sequence

MCAQQAKYRYVLHNAAVTVTNSNGCPTKVELPAKARPTGKGVQRCANCLVGPYSHIWAVCRVYGTGFEPPLVSSPLLSGLRTGLWNPINHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

Homology

[Close]

BLAST of Carg05859 vs. NCBI nr
Match: XP_022929510.1 (probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS 135
           I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ+S SRKP S
Sbjct: 675 IDHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQVSTSRKPIS 721

[Close]

BLAST of Carg05859 vs. NCBI nr
Match: XP_022985020.1 (probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS 135
           I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL VQ+S SRKPSS
Sbjct: 675 IDHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALFVQVSTSRKPSS 721

[Close]

BLAST of Carg05859 vs. NCBI nr
Match: XP_023553267.1 (probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS 135
           I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL VQ+S SRKP S
Sbjct: 675 IDHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALLVQVSTSRKPIS 721

[Close]

BLAST of Carg05859 vs. NCBI nr
Match: XP_008450188.1 (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo] >XP_008450189.1 PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo] >XP_016900855.1 PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS 134
           I+HG+PRDQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S +RK S
Sbjct: 675 IDHGAPRDQMEEAGLSSEHIAATVLTLMGRSKEALSFQVSAARKSS 720

[Close]

BLAST of Carg05859 vs. NCBI nr
Match: XP_004134268.1 (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis sativus] >KGN56311.1 hypothetical protein Csa_3G114510 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 8.5e-09
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS 134
           I+HGSP DQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S ++K S
Sbjct: 675 IDHGSPGDQMEEAGLSSEHIAATVLTLMGRSKEALSFQVSATKKSS 720

[Close]

BLAST of Carg05859 vs. TAIR10
Match: AT4G15560.1 (Deoxyxylulose-5-phosphate synthase)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 29/66 (43.94%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 66  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLG 123
           GF   +V    L GL  G   W P       I+HG+P DQ+ EAGL   HIA T L L+G
Sbjct: 651 GFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIG 710

[Close]

BLAST of Carg05859 vs. TAIR10
Match: AT5G11380.1 (1-deoxy-D-xylulose 5-phosphate synthase 3)

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL 123
           I   SPR+Q+  AGL+  HIA T L+LLGR++EAL
Sbjct: 662 IEEASPREQLALAGLTGHHIAATALSLLGRTREAL 696

[Close]

BLAST of Carg05859 vs. Swiss-Prot
Match: sp|O78328|DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=TKT2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.3e-07
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 66  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLG 125
           GF   +V    L GL  G   W P       I+HGSP DQ+ EAGL+  HIA TV  +LG
Sbjct: 650 GFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILG 709

[Close]

BLAST of Carg05859 vs. Swiss-Prot
Match: sp|O22567|DXS1_ORYSJ (1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLA1 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-06
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 66  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLG 125
           GF   +     L GL  G   W P       I+HGSP DQ+ EAGL+  HIA TV  +LG
Sbjct: 647 GFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLG 706

[Close]

BLAST of Carg05859 vs. Swiss-Prot
Match: sp|Q6YU51|DXS2_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190000 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-05
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV 125
           I+HG+P DQ+EEAGL+  HIA TVL+LLGR  EAL +
Sbjct: 676 IDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQL 712

[Close]

BLAST of Carg05859 vs. Swiss-Prot
Match: sp|Q38854|DXS_ARATH (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DXS PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-05
Identity = 29/66 (43.94%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 66  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLG 123
           GF   +V    L GL  G   W P       I+HG+P DQ+ EAGL   HIA T L L+G
Sbjct: 651 GFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIG 710

[Close]

BLAST of Carg05859 vs. TrEMBL
Match: tr|A0A1S3BNQ5|A0A1S3BNQ5_CUCME (probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491851 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS 134
           I+HG+PRDQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S +RK S
Sbjct: 675 IDHGAPRDQMEEAGLSSEHIAATVLTLMGRSKEALSFQVSAARKSS 720

[Close]

BLAST of Carg05859 vs. TrEMBL
Match: tr|A0A0A0L869|A0A0A0L869_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G114510 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS 134
           I+HGSP DQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S ++K S
Sbjct: 675 IDHGSPGDQMEEAGLSSEHIAATVLTLMGRSKEALSFQVSATKKSS 720

[Close]

BLAST of Carg05859 vs. TrEMBL
Match: tr|A0A288W8F4|A0A288W8F4_GARJA (DXS1 OS=Gardenia jasminoides OX=114476 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ 126
           I+HGSP+DQ+EEAGLSA HI GTVL+LLGR KEAL +Q
Sbjct: 678 IDHGSPKDQLEEAGLSAKHICGTVLSLLGRHKEALQLQ 715

[Close]

BLAST of Carg05859 vs. TrEMBL
Match: tr|A0A068TZ98|A0A068TZ98_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00036684001 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 88  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ 126
           I+HGSP+DQ+EEAGLSA HI GTVL+LLGR +EAL +Q
Sbjct: 678 IDHGSPKDQLEEAGLSAKHICGTVLSLLGRPQEALQLQ 715

[Close]

BLAST of Carg05859 vs. TrEMBL
Match: tr|A0A2I0XF04|A0A2I0XF04_9ASPA (Putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Dendrobium catenatum OX=906689 GN=MA16_Dca010533 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 13  HNAAVTVTNSNGC-PTKVELPAKARPTGKGVQRCANCLVGPYSHIWAVCRVYGT--GFEP 72
           HN ++TV ++  C P  V+L          ++R AN       H + +    G+  GF  
Sbjct: 599 HNVSITVADARFCKPLDVDL----------IRRLAN------EHEFLITAEEGSIGGFGS 658

Query: 73  PLVSSPLLSGLRTG------LWNP---INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKE 126
            +     L GL  G      L  P   I+HG+P+DQ++EAGLS+ HIA TVL+LLGR KE
Sbjct: 659 HVTHFLSLDGLLDGHLKLRSLVLPDRYIDHGAPQDQIDEAGLSSNHIAATVLSLLGRPKE 707

The following BLAST results are available for this feature:

BLAST of Carg05859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929510.1	8.8e-14	91.49	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita mos...	[more]
XP_022985020.1	8.8e-14	91.49	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita max...	[more]
XP_023553267.1	4.4e-13	89.36	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita pep...	[more]
XP_008450188.1	1.3e-09	76.09	PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cu...	[more]
XP_004134268.1	8.5e-09	73.91	PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cu...	[more]

BLAST of Carg05859 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15560.1	2.2e-06	43.94	Deoxyxylulose-5-phosphate synthase	[more]
AT5G11380.1	2.0e-04	57.14	1-deoxy-D-xylulose 5-phosphate synthase 3	[more]

BLAST of Carg05859 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O78328\|DXS_CAPAN	9.3e-07	45.59	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annu...	[more]
sp\|O22567\|DXS1_ORYSJ	3.5e-06	42.65	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
sp\|Q6YU51\|DXS2_ORYSJ	1.7e-05	64.86	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativ...	[more]
sp\|Q38854\|DXS_ARATH	3.9e-05	43.94	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of Carg05859 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNQ5\|A0A1S3BNQ5_CUCME	8.7e-10	76.09	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Cucumis mel...	[more]
tr\|A0A0A0L869\|A0A0A0L869_CUCSA	5.6e-09	73.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G114510 PE=3 SV=1	[more]
tr\|A0A288W8F4\|A0A288W8F4_GARJA	1.2e-06	76.32	DXS1 OS=Gardenia jasminoides OX=114476 PE=2 SV=1	[more]
tr\|A0A068TZ98\|A0A068TZ98_COFCA	3.4e-06	73.68	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00036684001 PE=3 ...	[more]
tr\|A0A2I0XF04\|A0A2I0XF04_9ASPA	4.5e-06	36.80	Putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Dendrobium ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05859-RA	Carg05859-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05859	Cp4.1LG14g00850	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05859	Cla97C10G191480	Watermelon (97103) v2	carwmbB1076

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05859	Wax gourd	carwgoB1191
Carg05859	Silver-seed gourd	carcarB646
Carg05859	Cucumber (Gy14) v2	carcgybB1002
Carg05859	Cucumber (Gy14) v1	carcgyB1136
Carg05859	Cucurbita maxima (Rimu)	carcmaB1409
Carg05859	Cucurbita maxima (Rimu)	carcmaB1414
Carg05859	Cucurbita moschata (Rifu)	carcmoB1366
Carg05859	Cucurbita moschata (Rifu)	carcmoB1371
Carg05859	Cucurbita pepo (Zucchini)	carcpeB1417
Carg05859	Wild cucumber (PI 183967)	carcpiB1054
Carg05859	Cucumber (Chinese Long) v2	carcuB1030
Carg05859	Cucumber (Chinese Long) v3	carcucB1060
Carg05859	Bottle gourd (USVL1VR-Ls)	carlsiB934
Carg05859	Melon (DHL92) v3.5.1	carmeB0991
Carg05859	Melon (DHL92) v3.6.1	carmedB1002
Carg05859	Watermelon (Charleston Gray)	carwcgB0991
Carg05859	Watermelon (97103) v1	carwmB1017