Carg05848 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05848
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LUTEIN DEFICIENT 5, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_033 : 1414588 .. 1415296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTGGGCTTCTCAGGCGGAATCTTTCGAGTAATCGTTGCCGCCCAGAACCACCAAGATACCATCAGCCGTTCCTTAGTGGTTCGCACAGCGGAAAACGCCAACCAAGTTGTCCGGCATTTATCTTTTTCACTCATTTTAGCTTCCTTTCTCTCTCTCTCTCTCTCTCTGTTTACAACTTAGCTTGCTCTGCATCTTCCACGAATTTGTTCTTCTCTTCATTTCCGATTCTGATATCTTAATTTTATCCAAAAACAAAGCAACCCATCTTCCATGGCTGCCAATTTCGCCATGCTTAAACCTTGTTCCTCATTTTCGACCCCATCATTTGTTCAGAACAAATTTCGTACACATAGATTGTTATGCACTGGCCCATCTTCCTCTTATTATCCACGATGTCAAGGAGGTTTGTTGTCAGCTACCTTTCGTTTCTTGAAGTAATTTTTGGGTTTTTCCTTGTGGGATTTCTTTTTTGTCCTTCCTTATCTTGTTTGGCTTCTGGGTTCTTAGGAGCTTATGGTTTACGCCTCGTTAAATGCGCTTCTTCTAATGGTAAGGAGCCTGATTCGTTGGATGATGGAGTTAAAAGTGTGGAGCAGTTACTTAAAGAGAAACAGCGAGCAGAATTGTCTGCTCGGATCGCTTCTGGAGAATTCACAGTGGAAAAAGCTGGGTATACAAGTATTTGTGTACTAGATCCTACGAATTGA

mRNA sequence

TCGTGGGCTTCTCAGGCGGAATCTTTCGAGTAATCGTTGCCGCCCAGAACCACCAAGATACCATCAGCCGTTCCTTAGTGGTTCGCACAGCGGAAAACGCCAACCAAGTTGTCCGGCATTTATCTTTTTCACTCATTTTAGCTTCCTTTCTCTCTCTCTCTCTCTCTCTGTTTACAACTTAGCTTGCTCTGCATCTTCCACGAATTTGTTCTTCTCTTCATTTCCGATTCTGATATCTTAATTTTATCCAAAAACAAAGCAACCCATCTTCCATGGCTGCCAATTTCGCCATGCTTAAACCTTGTTCCTCATTTTCGACCCCATCATTTGTTCAGAACAAATTTCGTACACATAGATTGTTATGCACTGGCCCATCTTCCTCTTATTATCCACGATGTCAAGGAGGAGCTTATGGTTTACGCCTCGTTAAATGCGCTTCTTCTAATGGTAAGGAGCCTGATTCGTTGGATGATGGAGTTAAAAGTGTGGAGCAGTTACTTAAAGAGAAACAGCGAGCAGAATTGTCTGCTCGGATCGCTTCTGGAGAATTCACAGTGGAAAAAGCTGGGTATACAAGTATTTGTGTACTAGATCCTACGAATTGA

Coding sequence (CDS)

ATGGCTGCCAATTTCGCCATGCTTAAACCTTGTTCCTCATTTTCGACCCCATCATTTGTTCAGAACAAATTTCGTACACATAGATTGTTATGCACTGGCCCATCTTCCTCTTATTATCCACGATGTCAAGGAGGAGCTTATGGTTTACGCCTCGTTAAATGCGCTTCTTCTAATGGTAAGGAGCCTGATTCGTTGGATGATGGAGTTAAAAGTGTGGAGCAGTTACTTAAAGAGAAACAGCGAGCAGAATTGTCTGCTCGGATCGCTTCTGGAGAATTCACAGTGGAAAAAGCTGGGTATACAAGTATTTGTGTACTAGATCCTACGAATTGA

Protein sequence

MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSICVLDPTN

Homology

[Close]

BLAST of Carg05848 vs. NCBI nr
Match: XP_023552789.1 (protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANFAMLKPCSSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK
Sbjct: 1   MAANFAMLKPCSSFSTPSFVQTKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
           EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+ S+
Sbjct: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGFPSV 103

[Close]

BLAST of Carg05848 vs. NCBI nr
Match: XP_022929344.1 (protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 200.3 bits (508), Expect = 3.4e-48
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANFAMLKPCSSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLR+VKCASSNGK
Sbjct: 1   MAANFAMLKPCSSFSTPSFVQTKFRTHRLLCTGPSSSYYPRCQGGAYGLRVVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
           EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+ S+
Sbjct: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGFPSV 103

[Close]

BLAST of Carg05848 vs. NCBI nr
Match: XP_022984320.1 (protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANFAM KP SSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLR+VKCASSNGK
Sbjct: 1   MAANFAMFKPYSSFSTPSFVQTKFRTHRLLCTGPSSSYYPRCQGGAYGLRVVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
           EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+ S+
Sbjct: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGFPSV 103

[Close]

BLAST of Carg05848 vs. NCBI nr
Match: XP_022136570.1 (protein LUTEIN DEFICIENT 5, chloroplastic [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANF MLKPCSSFST S VQ KF  HRL+CTGPSSS+YP+CQGGAYGL +VKCASSNGK
Sbjct: 1   MAANFTMLKPCSSFSTRSSVQRKFSAHRLVCTGPSSSFYPQCQGGAYGLCIVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
           EPDSLD+GVKSVE+LL+EK+RAELSARIASGEFTV K G+ S+
Sbjct: 61  EPDSLDNGVKSVERLLEEKRRAELSARIASGEFTVGKDGFPSV 103

[Close]

BLAST of Carg05848 vs. NCBI nr
Match: XP_008450166.1 (PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANFAMLKPCSSFS  S VQ KFR HR + T P SS YP+CQ GAYGL +VKCASSNGK
Sbjct: 1   MAANFAMLKPCSSFSATSSVQRKFRAHRSVATTPFSSIYPQCQAGAYGLCVVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
            P+SLD+GVK VE+LL+EK+RAELSARIASGEFTVEK G++S+
Sbjct: 61  GPNSLDNGVKKVERLLEEKRRAELSARIASGEFTVEKTGFSSV 103

[Close]

BLAST of Carg05848 vs. TAIR10
Match: AT1G31800.1 (cytochrome P450, family 97, subfamily A, polypeptide 3)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-09
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 51  LVKCASSNGKEP---DSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS 103
           +V  +SSNG++P   +S+ +GVKS+E+L +EK+RAELSARIASG FTV K+ + S
Sbjct: 27  VVFSSSSNGRDPLEENSVPNGVKSLEKLQEEKRRAELSARIASGAFTVRKSSFPS 81

[Close]

BLAST of Carg05848 vs. Swiss-Prot
Match: sp|Q93VK5|LUT5_ARATH (Protein LUTEIN DEFICIENT 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP97A3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 51  LVKCASSNGKEP---DSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS 103
           +V  +SSNG++P   +S+ +GVKS+E+L +EK+RAELSARIASG FTV K+ + S
Sbjct: 27  VVFSSSSNGRDPLEENSVPNGVKSLEKLQEEKRRAELSARIASGAFTVRKSSFPS 81

[Close]

BLAST of Carg05848 vs. TrEMBL
Match: tr|A0A1S3BPA6|A0A1S3BPA6_CUCME (protein LUTEIN DEFICIENT 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491836 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANFAMLKPCSSFS  S VQ KFR HR + T P SS YP+CQ GAYGL +VKCASSNGK
Sbjct: 1   MAANFAMLKPCSSFSATSSVQRKFRAHRSVATTPFSSIYPQCQAGAYGLCVVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
            P+SLD+GVK VE+LL+EK+RAELSARIASGEFTVEK G++S+
Sbjct: 61  GPNSLDNGVKKVERLLEEKRRAELSARIASGEFTVEKTGFSSV 103

[Close]

BLAST of Carg05848 vs. TrEMBL
Match: tr|A0A0A0L5K4|A0A0A0L5K4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115620 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.9e-32
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAANFA LKPCSSFST S VQ KFRTHR + T P  S+YP+ Q GAYGL +VKCASSNGK
Sbjct: 1   MAANFATLKPCSSFSTSSSVQRKFRTHRSVSTIPFPSFYPQYQAGAYGLCVVKCASSNGK 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
             +SLD+GVK VE+LL+EK+RAELSARIASGEFTVEK G+ S+
Sbjct: 61  GANSLDNGVKKVEKLLEEKRRAELSARIASGEFTVEKTGFPSV 103

[Close]

BLAST of Carg05848 vs. TrEMBL
Match: tr|A0A2N9F308|A0A2N9F308_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13239 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-16
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAA+F +L    SFST +      R +    T PSS  YP    G +GL  + C+SSNG 
Sbjct: 1   MAAHFPLLHAPPSFSTKT-----LRIYTFKPTSPSSFSYPTRHKGLHGLSTITCSSSNGG 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
           EP+S+D  +K+VE+ L+EK+RAELS+RIASGEFTVE++G+ S+
Sbjct: 61  EPESVDSSIKNVEKQLEEKRRAELSSRIASGEFTVEQSGFPSV 98

[Close]

BLAST of Carg05848 vs. TrEMBL
Match: tr|A0A2P4M7X0|A0A2P4M7X0_QUESU (Protein lutein deficient 5, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_22946 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.7e-16
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGK 60
           MAA+F +L      + PS        +R   T PS S YP+   G YGL    C+SSNG+
Sbjct: 1   MAAHFPLL-----HTPPSLSAKTLHFYRSKPTTPSFSSYPKRHKGLYGLSTTICSSSNGR 60

Query: 61  EPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS 103
           +P+S+D G KSVE+L++ K+RAELSARIASGEFTVE++G+ S
Sbjct: 61  DPNSVDSGAKSVEKLVEGKRRAELSARIASGEFTVEQSGFPS 97

[Close]

BLAST of Carg05848 vs. TrEMBL
Match: tr|B9RFU0|B9RFU0_RICCO (Cytochrome P450, putative OS=Ricinus communis OX=3988 GN=RCOM_1437260 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 1   MAANFAMLKPCSSFSTPSF-VQNKFRTHRLLCTGPSSSYYPRCQGGAYGLR---LVKCAS 60
           MAANFA+L+  SS S     +Q KF+  R+     SS  +P  Q G  G R   ++ CAS
Sbjct: 1   MAANFALLQVPSSISAKHHCLQTKFQVRRVKPINLSS--FPPTQNGVLGKRKFAVISCAS 60

Query: 61  SNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSI 104
           S G+EP+S +D VKSVE++L+EK+RAELSA+IASGEFTV+++G+ SI
Sbjct: 61  SKGREPESEEDPVKSVERILEEKRRAELSAKIASGEFTVQQSGFPSI 105

The following BLAST results are available for this feature:

BLAST of Carg05848 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552789.1	1.5e-48	96.12	protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022929344.1	3.4e-48	95.15	protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita moschata]	[more]
XP_022984320.1	1.9e-46	93.20	protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita maxima]	[more]
XP_022136570.1	6.5e-39	80.58	protein LUTEIN DEFICIENT 5, chloroplastic [Momordica charantia]	[more]
XP_008450166.1	2.2e-34	74.76	PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic [Cucumis melo]	[more]

BLAST of Carg05848 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31800.1	6.5e-09	56.36	cytochrome P450, family 97, subfamily A, polypeptide 3	[more]

BLAST of Carg05848 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93VK5\|LUT5_ARATH	1.2e-07	56.36	Protein LUTEIN DEFICIENT 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP...	[more]

BLAST of Carg05848 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPA6\|A0A1S3BPA6_CUCME	1.4e-34	74.76	protein LUTEIN DEFICIENT 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349183...	[more]
tr\|A0A0A0L5K4\|A0A0A0L5K4_CUCSA	3.9e-32	72.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115620 PE=3 SV=1	[more]
tr\|A0A2N9F308\|A0A2N9F308_FAGSY	1.8e-16	49.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13239 PE=4 SV=1	[more]
tr\|A0A2P4M7X0\|A0A2P4M7X0_QUESU	6.7e-16	50.00	Protein lutein deficient 5, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_229...	[more]
tr\|B9RFU0\|B9RFU0_RICCO	8.7e-16	51.40	Cytochrome P450, putative OS=Ricinus communis OX=3988 GN=RCOM_1437260 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05848-RA	Carg05848-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05848	Csa3G115620	Cucumber (Chinese Long) v2	carcuB1030
Carg05848	MELO3C014945	Melon (DHL92) v3.5.1	carmeB0991
Carg05848	ClCG10G008080	Watermelon (Charleston Gray)	carwcgB0991
Carg05848	CSPI03G06970	Wild cucumber (PI 183967)	carcpiB1054
Carg05848	Cucsa.260140	Cucumber (Gy14) v1	carcgyB1136
Carg05848	CmaCh16G007340	Cucurbita maxima (Rimu)	carcmaB1409
Carg05848	CmoCh16G007950	Cucurbita moschata (Rifu)	carcmoB1366
Carg05848	Lsi05G008060	Bottle gourd (USVL1VR-Ls)	carlsiB934
Carg05848	Cp4.1LG14g00950	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05848	CsGy3G007100	Cucumber (Gy14) v2	carcgybB1002
Carg05848	MELO3C014945.2	Melon (DHL92) v3.6.1	carmedB1002
Carg05848	CsaV3_3G007050	Cucumber (Chinese Long) v3	carcucB1060
Carg05848	Cla97C10G191610	Watermelon (97103) v2	carwmbB1076
Carg05848	Bhi11G000744	Wax gourd	carwgoB1191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05848	Silver-seed gourd	carcarB431
Carg05848	Silver-seed gourd	carcarB646
Carg05848	Cucurbita maxima (Rimu)	carcmaB1414
Carg05848	Cucurbita moschata (Rifu)	carcmoB1371
Carg05848	Cucurbita pepo (Zucchini)	carcpeB1413
Carg05848	Cucurbita pepo (Zucchini)	carcpeB1417
Carg05848	Watermelon (97103) v1	carwmB1017