Carg05560 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTCTCCCCTTCTCCTTCTTCTTCAGCTTATCCTTCTCTCAAGGCTCCCACTCTGTTGCCTCGAAATGGCTTCTGGGGATCACGAAGCCTTTTCTCTGATTTTCCCAATGTATGCTCTTCCTTTCGCACTCTCAATCTACCCACTGGATTCGCAAGAAAATCCGTAGTTGTCGCGGCAAAGAAATCCAATTCTAACAAGGACGACGGCCACCGTTCCGTTCCCAAACCTGATGAGACTACCGGCTTCTTCCCTGAAGCTGTTCTGCTTAAGGAGGTGCAGTTTTAATGCTTCTCATTTCTTTTTGATCTTTATATACTTTTATGTGTCTGTCGTCATCTGTTCATTATCTTCAAATTTCGGCGATTCTTTGCTCTTTGAACTATTCCAACTGGTTTGAATCTAAGAGCCGAGAAGCGGAAATTATAGAAGCCGAGAATTCGTGGAGGTTTGTTTGAATGTCATTCTCTTCGATACCTTCTTTGCTTCAAGTGCTTTTTGAAGGTTCTCTGATATGTCACTCGAGGAACTTCTAAGAATCGAGAATTGAAACTCCTAAGCGTAGATATTGGAGACCAGTACAAAAATTTGATAGGAAGCTGCTCAGATATACTGATGTTTAATCTGCTTATATACTTTGTGAGTGTGAAAAATTTCTTGAGTGGCCTTTTGGTTTTGATTCGCAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGGTGATTAATTCTATTCCATTTTGATCCATTCGTTGGCCTTCCTTTTAGAAGATTATGTTGGCTATGAACAGGAGTTATCAATTTCACTTTTGCCCTAATTTTGCAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAAGTAAGCTTACTTTCTGCTTGTTCTGGTCAAGTATGATTAATACAACACAATGAATAGGGAGTTGATGTTTTTATCATTAACACAGGGAGAAAAAGGTTGTATTTATTTAGTTTGTGTAATTTTTCTTGCCCAACTATTGTCAAAAGAAGGCAAAAGTTTCATCCTGTATTTGTTTATATTTGAAGTGGTGTATTTCCTTTCTTGTCACTGCAGTGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTAATGCAACTATCTTGACAATTTGGCTCTCTTATGCTGTGACTTTGTGCTGCCTGCAAGGCTGTTTTCTCTAAACGGTGTTGTAGCGAACATGTAATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGGATTTTAAAAACTTTGAGGGTAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATGTCTGCTAGAGGTGGGCTTTTAAAAACCAACCATCAGGTTCAGCAACTGCTTATTGATCCTAGTTGCATCAATGTTTCTTTGGAGTTCTGTTGAACTTTCCTTCAGTTTCTGATTAAAATAAAAATGCTGTTGCAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGCGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATACGCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAAAATAATTGGATAGTTTCAATTTGGCAGTAGAAGTTGAGGTGAGTTTCATGTAATGAGGTTTGTTTTAGCTGCGTTAGATTTTGTCCTTATCACGTAATGGCACATAATTGATACCATCTGCATTGGCTTCGGAGTGGGCCGTGAAGGCATTGAGCTAATTCTACAATTCTGTGATGGAGTTTTGCTTCACTTCAGGTATTAAGGTATTGAAACTGCCATTATTTTCCCTGAATTATATGCCCTTCACCAGTTAAAATACTTGTAGGTTTTAGGTCATGTCAACAAACCACACGTGACTCGATGTCGAATTATCTTCATCGCAACTGTTTCTCCATGGGAACCAAGTTATTAAATGTAATTCATCTTTCATGTCAATTTCAAACTTATGAATATCTGAAAATGTCAACATGTTGACGAAAATTTAAAATCCTATTAGAAACATTATGATGCGTCTGTTTTTCGGTTGGGTTTGTAGAGCTAGACTCATGATTAATCTCATACCAATTTGTTGAGGCATTAGCAATTTAAGTGGAAAAATATGGTTGGAAGTAAATGATATGCACAATTAGTTACAATTTTCAGGCTGAGTTGAGCTTCCAAAGTTGGATGTGTTTGTAAGATAGATCATAGCTATCTAATTTCAGATTTCTAGTACTCTGCCCGATTGGAAACTTTACCTATTCATTATTGACCCAATTTTAGACATATTGGGATTGTTCTTGCTTCTTGTTAACTGGAATTCTGATTGAATCATGAATGCTGCTTTTGATGAGTATCAGTTCTTCCCTTCATTCCCATCTTTCTTCCAAAGTTGGTCTCTTGTATATTTTGAGTTTACTCCCGAACCATTTAAGGAATACGTTATACTTTGAATTTATTCTATTTTAGTCTCTGTATTTTCATTACATCGTGAACTTATTTTTATCTCGTTCGAAAGAGATAAATTTGTATATTACCAACTCTACGAGCAACAGCCTATAAAATTCTCGTAAGAGAGGGCTGAAACTCATATTATTACAAAGGTAGAGAAGTGAATATCAAAGCATGGCAAAATGTGGTATGAGAATTACCGCCATTGCTGTAAGCTTCCTCATCCTCCTCCATCTGCCATCTCTTTGTACTGCAAGTATCAGAGAAGCAGCCCATTTCATTCCCCCATCAGATGTTGATCTTTTAGAATTCCCTCTGAATTTAGAGTACCTGGAAGCCGAATTCTTCTTATTTAGCTCTCTGGGACATGGTTTGGATAAAGTTGCACCAGATTTAGCCATGGGAGGGCCATCGCCTGTTGGTGCTCAAAAGGCCAACTTGAGCCCCTTCATCAAGGACATCATCACGCAATTCGCCTACCAGGAAGTTGGTCACGTGAGGTATTTTTCTACTCGACTTTTGTGAGGTATTTTTCTAGTTGACTTTTGTCGGGTTATGGAGCCTGCTGCCTATTTTAGGTTATTCAATTGTTATACATATATTCTTTAGTCAATATTACTTCTTGCATTTTCGCTCTCCTGCTCAATCGAGTATGTGCGTTTTTGTGCGATCCTAACTAGACTTTACACACGAATTTATGCAGGGCCATTAAAGATACAGTGAAAGGATTTCCAAGGCCATTGCTGAACTTGAGTTCAGAATCATTTGCCAAAGTGATGGATAGAGCCCTTGGCTGTTGGACGAACCCACCTTTCGACCCGTATGCTAATGACGTGAATTTCCTTCTCGCAAGCTACATCCTTCCTAATGTTGGACTCACTGGGTATGCTGGAGCAAATCCAAAGCTCAAATCTGCTGCCTCCAAGAAGGTATTCCCTGAAATTCAAAGACACTTTTCAATCTTACATACATACATGACACTAAACACACTCCCTACGAGTCGATGTTTCAGCTTGTTGCAGGTCTTCTAGGAGTCGAATCGGGTCAAGATGCAGTAATCAGATCTCTTCTTTATGAACACGCAGGGGAGAAGGTTGAACCATATGGAGTGACAGTGGCGGAGTTCACAGAGCGCATTTCAGAACTGATGAATAAGCTAGGACATGCAGGCACAAAAGATGAAGGCATTGTGGTACCCAAAGACAATGGTGGCATTGTGACAACCAAAGACGAGGGTGCCGAGGGTAAGACTTCAGGGAACGTGCTTGCTGGAGATGAGTACTCACTGGCATACGCGAGAACCCCCGAGGAGGTTCTAAGGATTTTGTATGGTGAAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCGAATGGTGCCGATGGTCGGATCGCTAAATGCCACTTAGCGACCAAGACACATAGCAAATAA TTCTCCCCTTCTCCTTCTTCTTCAGCTTATCCTTCTCTCAAGGCTCCCACTCTGTTGCCTCGAAATGGCTTCTGGGGATCACGAAGCCTTTTCTCTGATTTTCCCAATGTATGCTCTTCCTTTCGCACTCTCAATCTACCCACTGGATTCGCAAGAAAATCCGTAGTTGTCGCGGCAAAGAAATCCAATTCTAACAAGGACGACGGCCACCGTTCCGTTCCCAAACCTGATGAGACTACCGGCTTCTTCCCTGAAGCTGTTCTGCTTAAGGAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAATGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGCGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATACGCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAAAATAATTGGATAGTTTCAATTTGGCAGTAGAAGTTGAGGTGAGTTTCATGTAATGAGGTTTGTTTTAGCTGCGTTAGATTTTGTCCTTATCACGTAATGGCACATAATTGATACCATCTGCATTGGCTTCGGAGTGGGCCGTGAAGGCATTGAGCTAATTCTACAATTCTGTGATGGAGTTTTGCTTCACTTCAGGTATTAAGGTATTGAAACTGCCATTATTTTCCCTGAATTATATGCCCTTCACCAGTTAAAATACTTGTAGGTTTTAGGTCATGTCAACAAACCACACGTGACTCGATGTCGAATTATCTTCATCGCAACTGTTTCTCCATGGGAACCAAGTTATTAAATGTAATTCATCTTTCATGTCAATTTCAAACTTATGAATATCTGAAAATGTCAACATGTTGACGAAAATTTAAAATCCTATTAGAAACATTATGATGCGTCTGTTTTTCGGTTGGGTTTGTAGAGCTAGACTCATGATTAATCTCATACCAATTTGTTGAGGCATTAGCAATTTAAGTGGAAAAATATGGTTGGAAGTAAATGATATGCACAATTAGTTACAATTTTCAGGCTGAGTTGAGCTTCCAAAGTTGGATGTGTTTGTAAGATAGATCATAGCTATCTAATTTCAGATTTCTAGTACTCTGCCCGATTGGAAACTTTACCTATTCATTATTGACCCAATTTTAGACATATTGGGATTGTTCTTGCTTCTTGTTAACTGGAATTCTGATTGAATCATGAATGCTGCTTTTGATGAGTATCAGTTCTTCCCTTCATTCCCATCTTTCTTCCAAAGTTGGTCTCTTGTATATTTTGAGTTTACTCCCGAACCATTTAAGGAATACGTTATACTTTGAATTTATTCTATTTTAGTCTCTGTATTTTCATTACATCGTGAACTTATTTTTATCTCGTTCGAAAGAGATAAATTTGTATATTACCAACTCTACGAGCAACAGCCTATAAAATTCTCGTAAGAGAGGGCTGAAACTCATATTATTACAAAGGTAGAGAAGTGAATATCAAAGCATGGCAAAATGTGGTATGAGAATTACCGCCATTGCTGTAAGCTTCCTCATCCTCCTCCATCTGCCATCTCTTTGTACTGCAAGTATCAGAGAAGCAGCCCATTTCATTCCCCCATCAGATGTTGATCTTTTAGAATTCCCTCTGAATTTAGAGTACCTGGAAGCCGAATTCTTCTTATTTAGCTCTCTGGGACATGGTTTGGATAAAGTTGCACCAGATTTAGCCATGGGAGGGCCATCGCCTGTTGGTGCTCAAAAGGCCAACTTGAGCCCCTTCATCAAGGACATCATCACGCAATTCGCCTACCAGGAAGTTGGTCACGTGAGGGCCATTAAAGATACAGTGAAAGGATTTCCAAGGCCATTGCTGAACTTGAGTTCAGAATCATTTGCCAAAGTGATGGATAGAGCCCTTGGCTGTTGGACGAACCCACCTTTCGACCCGTATGCTAATGACGTGAATTTCCTTCTCGCAAGCTACATCCTTCCTAATGTTGGACTCACTGGGTATGCTGGAGCAAATCCAAAGCTCAAATCTGCTGCCTCCAAGAAGCTTGTTGCAGGTCTTCTAGGAGTCGAATCGGGTCAAGATGCAGTAATCAGATCTCTTCTTTATGAACACGCAGGGGAGAAGGTTGAACCATATGGAGTGACAGTGGCGGAGTTCACAGAGCGCATTTCAGAACTGATGAATAAGCTAGGACATGCAGGCACAAAAGATGAAGGCATTGTGGTACCCAAAGACAATGGTGGCATTGTGACAACCAAAGACGAGGGTGCCGAGGGTAAGACTTCAGGGAACGTGCTTGCTGGAGATGAGTACTCACTGGCATACGCGAGAACCCCCGAGGAGGTTCTAAGGATTTTGTATGGTGAAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCGAATGGTGCCGATGGTCGGATCGCTAAATGCCACTTAGCGACCAAGACACATAGCAAATAA ATGGCAAAATGTGGTATGAGAATTACCGCCATTGCTGTAAGCTTCCTCATCCTCCTCCATCTGCCATCTCTTTGTACTGCAAGTATCAGAGAAGCAGCCCATTTCATTCCCCCATCAGATGTTGATCTTTTAGAATTCCCTCTGAATTTAGAGTACCTGGAAGCCGAATTCTTCTTATTTAGCTCTCTGGGACATGGTTTGGATAAAGTTGCACCAGATTTAGCCATGGGAGGGCCATCGCCTGTTGGTGCTCAAAAGGCCAACTTGAGCCCCTTCATCAAGGACATCATCACGCAATTCGCCTACCAGGAAGTTGGTCACGTGAGGGCCATTAAAGATACAGTGAAAGGATTTCCAAGGCCATTGCTGAACTTGAGTTCAGAATCATTTGCCAAAGTGATGGATAGAGCCCTTGGCTGTTGGACGAACCCACCTTTCGACCCGTATGCTAATGACGTGAATTTCCTTCTCGCAAGCTACATCCTTCCTAATGTTGGACTCACTGGGTATGCTGGAGCAAATCCAAAGCTCAAATCTGCTGCCTCCAAGAAGCTTGTTGCAGGTCTTCTAGGAGTCGAATCGGGTCAAGATGCAGTAATCAGATCTCTTCTTTATGAACACGCAGGGGAGAAGGTTGAACCATATGGAGTGACAGTGGCGGAGTTCACAGAGCGCATTTCAGAACTGATGAATAAGCTAGGACATGCAGGCACAAAAGATGAAGGCATTGTGGTACCCAAAGACAATGGTGGCATTGTGACAACCAAAGACGAGGGTGCCGAGGGTAAGACTTCAGGGAACGTGCTTGCTGGAGATGAGTACTCACTGGCATACGCGAGAACCCCCGAGGAGGTTCTAAGGATTTTGTATGGTGAAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCGAATGGTGCCGATGGTCGGATCGCTAAATGCCACTTAGCGACCAAGACACATAGCAAATAA MAKCGMRITAIAVSFLILLHLPSLCTASIREAAHFIPPSDVDLLEFPLNLEYLEAEFFLFSSLGHGLDKVAPDLAMGGPSPVGAQKANLSPFIKDIITQFAYQEVGHVRAIKDTVKGFPRPLLNLSSESFAKVMDRALGCWTNPPFDPYANDVNFLLASYILPNVGLTGYAGANPKLKSAASKKLVAGLLGVESGQDAVIRSLLYEHAGEKVEPYGVTVAEFTERISELMNKLGHAGTKDEGIVVPKDNGGIVTTKDEGAEGKTSGNVLAGDEYSLAYARTPEEVLRILYGEGNEHVPGGFYPNGADGRIAKCHLATKTHSK
BLAST of Carg05560 vs. NCBI nr
Match: XP_022959138.1 (desiccation-related protein PCC13-62-like [Cucurbita moschata] >XP_022959139.1 desiccation-related protein PCC13-62-like [Cucurbita moschata]) HSP 1 Score: 643.3 bits (1658), Expect = 4.5e-181 Identity = 318/322 (98.76%), Postives = 320/322 (99.38%), Query Frame = 0
BLAST of Carg05560 vs. NCBI nr
Match: XP_023548156.1 (desiccation-related protein PCC13-62-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 637.1 bits (1642), Expect = 3.2e-179 Identity = 315/322 (97.83%), Postives = 318/322 (98.76%), Query Frame = 0
BLAST of Carg05560 vs. NCBI nr
Match: XP_023006613.1 (desiccation-related protein PCC13-62-like [Cucurbita maxima]) HSP 1 Score: 598.6 bits (1542), Expect = 1.3e-167 Identity = 299/331 (90.33%), Postives = 306/331 (92.45%), Query Frame = 0
BLAST of Carg05560 vs. NCBI nr
Match: XP_023006619.1 (desiccation-related protein PCC13-62-like [Cucurbita maxima]) HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136 Identity = 253/322 (78.57%), Postives = 272/322 (84.47%), Query Frame = 0
BLAST of Carg05560 vs. NCBI nr
Match: XP_022959141.1 (desiccation-related protein PCC13-62-like [Cucurbita moschata]) HSP 1 Score: 489.2 bits (1258), Expect = 1.1e-134 Identity = 248/322 (77.02%), Postives = 270/322 (83.85%), Query Frame = 0
BLAST of Carg05560 vs. TAIR10
Match: AT1G47980.1 (unknown protein) HSP 1 Score: 384.0 bits (985), Expect = 8.9e-107 Identity = 191/278 (68.71%), Postives = 221/278 (79.50%), Query Frame = 0
BLAST of Carg05560 vs. TAIR10
Match: AT3G62730.1 (unknown protein) HSP 1 Score: 317.4 bits (812), Expect = 1.0e-86 Identity = 164/281 (58.36%), Postives = 197/281 (70.11%), Query Frame = 0
BLAST of Carg05560 vs. Swiss-Prot
Match: sp|P22242|DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.7e-94 Identity = 181/304 (59.54%), Postives = 218/304 (71.71%), Query Frame = 0
BLAST of Carg05560 vs. TrEMBL
Match: tr|A0A1S3C876|A0A1S3C876_CUCME (desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC103497774 PE=4 SV=1) HSP 1 Score: 453.4 bits (1165), Expect = 4.4e-124 Identity = 226/305 (74.10%), Postives = 255/305 (83.61%), Query Frame = 0
BLAST of Carg05560 vs. TrEMBL
Match: tr|A0A0A0KF49|A0A0A0KF49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324880 PE=4 SV=1) HSP 1 Score: 452.2 bits (1162), Expect = 9.7e-124 Identity = 224/305 (73.44%), Postives = 254/305 (83.28%), Query Frame = 0
BLAST of Carg05560 vs. TrEMBL
Match: tr|A0A1Q3BUM9|A0A1Q3BUM9_CEPFO (Ferritin_2 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15170 PE=4 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 1.3e-115 Identity = 216/306 (70.59%), Postives = 246/306 (80.39%), Query Frame = 0
BLAST of Carg05560 vs. TrEMBL
Match: tr|V4RZB9|V4RZB9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006860mg PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 1.7e-112 Identity = 201/282 (71.28%), Postives = 234/282 (82.98%), Query Frame = 0
BLAST of Carg05560 vs. TrEMBL
Match: tr|V4RFB2|V4RFB2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005527mg PE=4 SV=1) HSP 1 Score: 414.1 bits (1063), Expect = 2.9e-112 Identity = 206/300 (68.67%), Postives = 243/300 (81.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |