Carg05548 (gene) Silver-seed gourd

Overview
NameCarg05548
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_046 : 1091695 .. 1091996 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACACAACGCCCCAAAACAACACTGTATCGATCATCTGTCACGATGCCAATAACCCATCGTTATGCTAGCAATTGTTGAAACCAGTGAGAAACTTAGATGTCGTTGGCGTAACTAATTACACCTTCAACCTTACACATACGAGCACCATCGAATGTCTCCACTACGCACGGCGACTTGAGGGGGAAGAGACAATCAATCCAGAGTTTAAGAATCGATATTCAGATTGTTCGAAACACATAAACTCTTCGTTGCCCGACGTAGAAACTGCTCAATATTGCATGGGTTATCATACATAA

mRNA sequence

ATGCAGACACAACGCCCCAAAACAACACTGTATCGATCATCTGTCACGATGCCAATAACCCATCTGAGAAACTTAGATGTCGTTGGCGTAACTAATTACACCTTCAACCTTACACATACGAGCACCATCGAATGTCTCCACTACGCACGGCGACTTGAGGGGGAAGAGACAATCAATCCAGAGTTTAAGAATCGATATTCAGATTGTTCGAAACACATAAACTCTTCGTTGCCCGACGTAGAAACTGCTCAATATTGCATGGGTTATCATACATAA

Coding sequence (CDS)

ATGCAGACACAACGCCCCAAAACAACACTGTATCGATCATCTGTCACGATGCCAATAACCCATCTGAGAAACTTAGATGTCGTTGGCGTAACTAATTACACCTTCAACCTTACACATACGAGCACCATCGAATGTCTCCACTACGCACGGCGACTTGAGGGGGAAGAGACAATCAATCCAGAGTTTAAGAATCGATATTCAGATTGTTCGAAACACATAAACTCTTCGTTGCCCGACGTAGAAACTGCTCAATATTGCATGGGTTATCATACATAA

Protein sequence

MQTQRPKTTLYRSSVTMPITHLRNLDVVGVTNYTFNLTHTSTIECLHYARRLEGEETINPEFKNRYSDCSKHINSSLPDVETAQYCMGYHT
Homology
[Close]
BLAST of Carg05548 vs. NCBI nr
Match: XP_022958860.1 (pectinesterase inhibitor-like [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-15
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 0 

Query: 22  LRNLDVVGVTNYTFNLTHTSTIECLHYARRLEGEETINPEFKNRYSDCSKHINSSLPDVE 81
           +RNLD V +TNYT N T TS IECLHYA+ LE +ET+N E K RYS CSK I S++ D+E
Sbjct: 53  VRNLDSVSLTNYTLNFTRTSAIECLHYAQGLEAKETVNLELKKRYSYCSKSIKSTVTDIE 112

Query: 82  TAQYCMGY 90
            AQ  MGY
Sbjct: 113 VAQEYMGY 120

[Close]
BLAST of Carg05548 vs. NCBI nr
Match: XP_023548317.1 (pectinesterase inhibitor-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 24  NLDVVGVTNYTFNLTHTSTIECLHYARRLEGEETINPEFKNRYSDCSKHINSSLPDVETA 83
           NL+   + NY  +L HT+ +EC    +RL+ EET N E K RYS+C + I+SS+  +E+ 
Sbjct: 55  NLNATNMANYMIDLAHTNAVECRRRVQRLKAEETTNLELKKRYSECWQCIDSSVSAIESG 114

Query: 84  QYCMGY 90
           +  M Y
Sbjct: 115 KQYMEY 120

[Close]
BLAST of Carg05548 vs. NCBI nr
Match: XP_022958859.1 (pectinesterase inhibitor 1-like [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 0 

Query: 36 NLTHTSTIECLHYARRLEGEETINPEFKNRYSDCSKHINSSLPDVETAQYCMGY 90
          +L HTS +EC    ++LE EET+NP+ K RYS+C +  NSS+  +E  +  + +
Sbjct: 7  HLAHTSVVECRRRVQQLEAEETVNPKLKKRYSECLESTNSSVNAIEVGKQHLAF 60

The following BLAST results are available for this feature:
BLAST of Carg05548 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958860.19.2e-1561.76pectinesterase inhibitor-like [Cucurbita moschata][more]
XP_023548317.16.0e-0640.91pectinesterase inhibitor-like [Cucurbita pepo subsp. pepo][more]
XP_022958859.13.3e-0440.74pectinesterase inhibitor 1-like [Cucurbita moschata][more]
BLAST of Carg05548 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg05548 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg05548 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035513Invertase/methylesterase_inhib
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05548-RACarg05548-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035513Invertase/pectin methylesterase inhibitor domain superfamilyGENE3DG3DSA:1.20.140.40coord: 8..90
e-value: 3.6E-5
score: 25.6
IPR035513Invertase/pectin methylesterase inhibitor domain superfamilySUPERFAMILYSSF101148Plant invertase/pectin methylesterase inhibitorcoord: 22..87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05548Cp4.1LG12g03240Cucurbita pepo (Zucchini)carcpeB0099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05548Silver-seed gourdcarcarB079
Carg05548Silver-seed gourdcarcarB081
Carg05548Silver-seed gourdcarcarB085
Carg05548Cucumber (Gy14) v2carcgybB0070
Carg05548Cucumber (Gy14) v2carcgybB0072
Carg05548Cucumber (Gy14) v1carcgyB0076
Carg05548Cucumber (Gy14) v1carcgyB0083
Carg05548Cucurbita maxima (Rimu)carcmaB0089
Carg05548Cucurbita maxima (Rimu)carcmaB0091
Carg05548Cucurbita maxima (Rimu)carcmaB0095
Carg05548Cucurbita maxima (Rimu)carcmaB0096
Carg05548Cucurbita moschata (Rifu)carcmoB0096
Carg05548Cucurbita moschata (Rifu)carcmoB0095
Carg05548Cucurbita moschata (Rifu)carcmoB0097
Carg05548Cucurbita moschata (Rifu)carcmoB0101
Carg05548Cucurbita moschata (Rifu)carcmoB0103
Carg05548Cucurbita moschata (Rifu)carcmoB0104
Carg05548Cucurbita pepo (Zucchini)carcpeB0098
Carg05548Cucurbita pepo (Zucchini)carcpeB0102
Carg05548Cucurbita pepo (Zucchini)carcpeB0106
Carg05548Cucurbita pepo (Zucchini)carcpeB0108
Carg05548Cucurbita pepo (Zucchini)carcpeB0109
Carg05548Wild cucumber (PI 183967)carcpiB0075
Carg05548Wild cucumber (PI 183967)carcpiB0073
Carg05548Cucumber (Chinese Long) v2carcuB0070
Carg05548Cucumber (Chinese Long) v2carcuB0071
Carg05548Cucumber (Chinese Long) v3carcucB0077
Carg05548Cucumber (Chinese Long) v3carcucB0079
Carg05548Bottle gourd (USVL1VR-Ls)carlsiB061
Carg05548Bottle gourd (USVL1VR-Ls)carlsiB062
Carg05548Bottle gourd (USVL1VR-Ls)carlsiB064
Carg05548Melon (DHL92) v3.5.1carmeB0067
Carg05548Melon (DHL92) v3.5.1carmeB0074
Carg05548Melon (DHL92) v3.6.1carmedB0068
Carg05548Melon (DHL92) v3.6.1carmedB0075
Carg05548Watermelon (Charleston Gray)carwcgB0070
Carg05548Watermelon (Charleston Gray)carwcgB0071
Carg05548Watermelon (Charleston Gray)carwcgB0072
Carg05548Watermelon (Charleston Gray)carwcgB0073
Carg05548Watermelon (97103) v1carwmB0068
Carg05548Watermelon (97103) v1carwmB0070
Carg05548Watermelon (97103) v1carwmB0071
Carg05548Watermelon (97103) v1carwmB0073
Carg05548Watermelon (97103) v2carwmbB0067
Carg05548Watermelon (97103) v2carwmbB0068
Carg05548Watermelon (97103) v2carwmbB0069
Carg05548Watermelon (97103) v2carwmbB0070
Carg05548Wax gourdcarwgoB0079
Carg05548Wax gourdcarwgoB0080
Carg05548Wax gourdcarwgoB0085
Carg05548Wax gourdcarwgoB0086