Carg05547 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05547
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein TAPETUM DETERMINANT 1-like
Location	Cucurbita_argyrosperma_scaffold_046 : 1086817 .. 1088020 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCCTTCAACCACACGAACCCTTCAATTCCCGTCGAGCCCGAGCGAGAGCTTCTCCACCTTAAAAAGCCTTTGAAGCAAGGTACGATTGTTGTTTAACGATTCCAAATACTAATGTTTTGTTTAATAATTATCCCAGTTTTTTGTTTTCCAAAATTAAATGTGTTTTGCTTTTTAACCCTGTGTTCTTGAAATCTCTTACATTTCTTGAAATCTCTCGAGTCCGTTATTGAAACAGAGAATAGATCTATCATTTCTTGAAATCTCCCACTGAATATACTCCCTCATCCATGTGAGGTTGATATTAGGTGGGGAGGTTCTTGAAATCTCTGAGTTATTGATAAACTGAATATACTCCCTCATTCCAGTGAGGCCTATGAGGTTGACATTGGCCGGGAGGAGAACCAAATACCCTTTATAAGGGTATGGAAATGGGTCGGGAGGAGAACAAAATACCTTGATAAGGGTATGGAAACCTTCCTGTAACAGCCCAGATGGAAACCTTCCTGTGACATTGCAGATCAGCCCAGATCCACCCCGAGCAAATATTATCCTTTTTAGGCTTTTCCTTTCGGGCTTCCCCACAAATCTTTAAAACGCGTCTGCTAAGGGAAAGTTTCAACACCCTCATAAATGGTGGTTTGTTCTCCTCCCAACCAATGTGGGACGTCACACTTCCCCTGTCAGCCTGAGGAAAAGCACGAAAGCCAAAGCCAAATAAGACAAGACAATATTTGCTTCCAACATGAGAGGCAAACATGACACCACGTCTCAGACAAATAGGACAATATTTGCTAGTCATACGCAGACATGGGACCACTACCAGGGGGAAATAGGCCGAAGGGTTATTTTTAAACTAAATGATTTAATTATTTATTTATATTTTGTCAAAGCAGAAAAATGCAGCGGGAGAGACATAAGCATATCGCAGGGACAAGTTTCAACGTCGGGGATTCCACAGTACGCCGTCGAAATCATGAACACGTGTCTCTCCGATTGCGCGCCGTTGGATGTTCATCTGTCTTGCGGCATGTTTTCCTCTGCAAACCTCATAGACCCTAGACTTTTCAGGCGCCTGGGTAACGATGATTGTTTGGTGAACGGCGGGCGGGCATTGAAACCAGGCCAAATCATCAGATTCGTTTACTCCACCACCTTCAAGTTCCCTCTCGCCTTCAAATCCGCCAAATTCTGTTAA

mRNA sequence

ATGGCCTCTTCCTTCAACCACACGAACCCTTCAATTCCCGTCGAGCCCGAGCGAGAGCTTCTCCACCTTAAAAAGCCTTTGAAGCAAGAAAAATGCAGCGGGAGAGACATAAGCATATCGCAGGGACAAGTTTCAACGTCGGGGATTCCACAGTACGCCGTCGAAATCATGAACACGTGTCTCTCCGATTGCGCGCCGTTGGATGTTCATCTGTCTTGCGGCATGTTTTCCTCTGCAAACCTCATAGACCCTAGACTTTTCAGGCGCCTGGGTAACGATGATTGTTTGGTGAACGGCGGGCGGGCATTGAAACCAGGCCAAATCATCAGATTCGTTTACTCCACCACCTTCAAGTTCCCTCTCGCCTTCAAATCCGCCAAATTCTGTTAA

Coding sequence (CDS)

ATGGCCTCTTCCTTCAACCACACGAACCCTTCAATTCCCGTCGAGCCCGAGCGAGAGCTTCTCCACCTTAAAAAGCCTTTGAAGCAAGAAAAATGCAGCGGGAGAGACATAAGCATATCGCAGGGACAAGTTTCAACGTCGGGGATTCCACAGTACGCCGTCGAAATCATGAACACGTGTCTCTCCGATTGCGCGCCGTTGGATGTTCATCTGTCTTGCGGCATGTTTTCCTCTGCAAACCTCATAGACCCTAGACTTTTCAGGCGCCTGGGTAACGATGATTGTTTGGTGAACGGCGGGCGGGCATTGAAACCAGGCCAAATCATCAGATTCGTTTACTCCACCACCTTCAAGTTCCCTCTCGCCTTCAAATCCGCCAAATTCTGTTAA

Protein sequence

MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKSAKFC

Homology

[Close]

BLAST of Carg05547 vs. NCBI nr
Match: XP_022959000.1 (TPD1 protein homolog 1-like [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-66
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTC 60
           MASSFNHTNPSIPVEPER LLH KKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTC
Sbjct: 1   MASSFNHTNPSIPVEPERALLHRKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTC 60

Query: 61  LSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFP 120
           LSDCAPLDVHLSCGMFSSANLI+PRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFP
Sbjct: 61  LSDCAPLDVHLSCGMFSSANLINPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFP 120

Query: 121 LAFKSAKFC 130
           LAFKSAKFC
Sbjct: 121 LAFKSAKFC 129

[Close]

BLAST of Carg05547 vs. NCBI nr
Match: CDO98766.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 156.0 bits (393), Expect = 8.7e-35
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 9   NPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLD 68
           N +  +EP +  L  +K L  + CS RDISISQ   STSGIPQY V+I+NTC+S CAP  
Sbjct: 37  NRTTVIEPGKAYLKHRKFLIHDFCSNRDISISQSMYSTSGIPQYIVQIVNTCISGCAPSK 96

Query: 69  VHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKSAKF 128
           +HL CG F+SA L++PR FRRL  DDCLVNGG+ L+ GQIIRF YS +F +PL+FKSAKF
Sbjct: 97  IHLHCGWFASAKLVNPRTFRRLSYDDCLVNGGKPLRTGQIIRFTYSNSFMYPLSFKSAKF 156

Query: 129 C 130
           C
Sbjct: 157 C 157

[Close]

BLAST of Carg05547 vs. NCBI nr
Match: XP_014623826.1 (TPD1 protein homolog 1 [Glycine max] >KRH11947.1 hypothetical protein GLYMA_15G140600 [Glycine max])

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 3   SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTC 62
           SS    N SI V  + E  H   +K      C+ +DISISQ Q ST GIPQ+ V+I+N C
Sbjct: 40  SSHEDKNGSITVSMKVEHAHSASRKFWLHGTCTSKDISISQSQTSTPGIPQFIVQIVNNC 99

Query: 63  LSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFP 122
           +S CAP D+HL CGMF+SA +++PRLF+R+  DDCLVNGG  L P QIIRF YS TF +P
Sbjct: 100 VSGCAPSDIHLHCGMFASARMVNPRLFKRISYDDCLVNGGNPLAPSQIIRFTYSNTFSYP 159

Query: 123 LAFKSAKFC 130
           LAFKSAKFC
Sbjct: 160 LAFKSAKFC 168

[Close]

BLAST of Carg05547 vs. NCBI nr
Match: CBI22881.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 6   NHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCA 65
           N  + +  ++P +   + +K L    C+ RDISISQ + S+SGIPQY V+I+NTC+S CA
Sbjct: 11  NQNSTAAVIKPAQVYSNYRKLLLHGTCTNRDISISQSRDSSSGIPQYIVQIVNTCVSGCA 70

Query: 66  PLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS 125
           P D+HL CG F+SA +++PR+F+RL  DDCLVNGG+ LK  QIIRF YS +F +PLAFKS
Sbjct: 71  PSDIHLHCGWFASARIVNPRIFKRLFYDDCLVNGGKPLKTSQIIRFTYSNSFMYPLAFKS 130

Query: 126 AKFC 130
           AKFC
Sbjct: 131 AKFC 134

[Close]

BLAST of Carg05547 vs. NCBI nr
Match: XP_010649517.1 (PREDICTED: TPD1 protein homolog 1 [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 6   NHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCA 65
           N  + +  ++P +   + +K L    C+ RDISISQ + S+SGIPQY V+I+NTC+S CA
Sbjct: 41  NQNSTAAVIKPAQVYSNYRKLLLHGTCTNRDISISQSRDSSSGIPQYIVQIVNTCVSGCA 100

Query: 66  PLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS 125
           P D+HL CG F+SA +++PR+F+RL  DDCLVNGG+ LK  QIIRF YS +F +PLAFKS
Sbjct: 101 PSDIHLHCGWFASARIVNPRIFKRLFYDDCLVNGGKPLKTSQIIRFTYSNSFMYPLAFKS 160

Query: 126 AKFC 130
           AKFC
Sbjct: 161 AKFC 164

[Close]

BLAST of Carg05547 vs. TAIR10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-24
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 30  EKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLF 89
           + CS  DI + QG  +   SG+P Y VEI N+C+SDC   ++H+SCG FSS  L++PR+F
Sbjct: 78  QDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVF 137

Query: 90  RRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS 126
           RRL  DDCLVN G+ L PGQ + F Y+ +F +PL+  S
Sbjct: 138 RRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

[Close]

BLAST of Carg05547 vs. TAIR10
Match: AT4G24972.1 (tapetum determinant 1)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-20
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 14  VEPERELLHLKKPLKQEKCSGRDISISQG--QVSTSGIPQYAVEIMNTCLSDCAPLDVHL 73
           VEPER           EKC   DI ++Q   +   +GIP Y VEI N C+S C    +H+
Sbjct: 68  VEPER---------IGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHI 127

Query: 74  SCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLA 123
           +CG FSSA LI+PR+F+R+  DDCLVN G+ L  G  + F Y+ TF + L+
Sbjct: 128 NCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 169

[Close]

BLAST of Carg05547 vs. TAIR10
Match: AT1G05835.1 (PHD finger protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 32  CSGR--DISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRR 91
           C G+  + ++ Q QV      ++ VE+MN C   C  +++ L C  F   +L+DP   R 
Sbjct: 26  CEGKSSEPAVRQTQVKWREGKKFRVEVMNKC-PMCPIINLRLKCQGFPQ-SLVDPTFLRV 85

Query: 92  LGND--DCLVNGGRALKPGQIIRFVYSTTFKFPL 122
           L +   +C+VN G  L P Q + F YS T +F L
Sbjct: 86  LSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117

[Close]

BLAST of Carg05547 vs. Swiss-Prot
Match: sp|Q1G3T1|TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 30  EKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLF 89
           + CS  DI + QG  +   SG+P Y VEI N+C+SDC   ++H+SCG FSS  L++PR+F
Sbjct: 78  QDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVF 137

Query: 90  RRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS 126
           RRL  DDCLVN G+ L PGQ + F Y+ +F +PL+  S
Sbjct: 138 RRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

[Close]

BLAST of Carg05547 vs. Swiss-Prot
Match: sp|Q8S6P9|TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 22  HLKKPLKQEKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSA 81
           H  + ++ + CS +++ + Q       SGIP Y+VEI+N C + C   DVH+SCG F+SA
Sbjct: 61  HWMQRMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVCTA-CTVYDVHISCGEFASA 120

Query: 82  NLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLA 123
            L+DP  F+R+G +DCLV GG  L P + + F YS +F +PLA
Sbjct: 121 ELVDPSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLA 162

[Close]

BLAST of Carg05547 vs. Swiss-Prot
Match: sp|Q2QR54|TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 32  CSGR-DISISQGQVS--TSGIPQYAVEIMNTCL------SDCAPLDVHLSCGMFSSANLI 91
           C+G  DI+I QG+ +   SG+P Y V++MN C        +CA   +H+ CG FSS +L+
Sbjct: 114 CAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGXXXXDEECAIAGIHVRCGWFSSVSLV 173

Query: 92  DPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKSA 127
           DPR+FRRLG+DDCL+N GR L  G+ + F Y+ +F + L+   A
Sbjct: 174 DPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVA 217

[Close]

BLAST of Carg05547 vs. Swiss-Prot
Match: sp|Q6TLJ2|TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 14  VEPERELLHLKKPLKQEKCSGRDISISQG--QVSTSGIPQYAVEIMNTCLSDCAPLDVHL 73
           VEPER           EKC   DI ++Q   +   +GIP Y VEI N C+S C    +H+
Sbjct: 68  VEPER---------IGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHI 127

Query: 74  SCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLA 123
           +CG FSSA LI+PR+F+R+  DDCLVN G+ L  G  + F Y+ TF + L+
Sbjct: 128 NCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 169

[Close]

BLAST of Carg05547 vs. Swiss-Prot
Match: sp|A8MS78|Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.9e-06
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 32  CSGR--DISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRR 91
           C G+  + ++ Q QV      ++ VE+MN C   C  +++ L C  F   +L+DP   R 
Sbjct: 26  CEGKSSEPAVRQTQVKWREGKKFRVEVMNKC-PMCPIINLRLKCQGFPQ-SLVDPTFLRV 85

Query: 92  LGND--DCLVNGGRALKPGQIIRFVYSTTFKFPL 122
           L +   +C+VN G  L P Q + F YS T +F L
Sbjct: 86  LSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117

[Close]

BLAST of Carg05547 vs. TrEMBL
Match: tr|A0A068TRC0|A0A068TRC0_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025682001 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.8e-35
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 9   NPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLD 68
           N +  +EP +  L  +K L  + CS RDISISQ   STSGIPQY V+I+NTC+S CAP  
Sbjct: 37  NRTTVIEPGKAYLKHRKFLIHDFCSNRDISISQSMYSTSGIPQYIVQIVNTCISGCAPSK 96

Query: 69  VHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKSAKF 128
           +HL CG F+SA L++PR FRRL  DDCLVNGG+ L+ GQIIRF YS +F +PL+FKSAKF
Sbjct: 97  IHLHCGWFASAKLVNPRTFRRLSYDDCLVNGGKPLRTGQIIRFTYSNSFMYPLSFKSAKF 156

Query: 129 C 130
           C
Sbjct: 157 C 157

[Close]

BLAST of Carg05547 vs. TrEMBL
Match: tr|I1MGE9|I1MGE9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100796799 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.3e-34
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 3   SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTC 62
           SS    N SI V  + E  H   +K      C+ +DISISQ Q ST GIPQ+ V+I+N C
Sbjct: 40  SSHEDKNGSITVSMKVEHAHSASRKFWLHGTCTSKDISISQSQTSTPGIPQFIVQIVNNC 99

Query: 63  LSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFP 122
           +S CAP D+HL CGMF+SA +++PRLF+R+  DDCLVNGG  L P QIIRF YS TF +P
Sbjct: 100 VSGCAPSDIHLHCGMFASARMVNPRLFKRISYDDCLVNGGNPLAPSQIIRFTYSNTFSYP 159

Query: 123 LAFKSAKFC 130
           LAFKSAKFC
Sbjct: 160 LAFKSAKFC 168

[Close]

BLAST of Carg05547 vs. TrEMBL
Match: tr|D7SYL1|D7SYL1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g00980 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 6   NHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCA 65
           N  + +  ++P +   + +K L    C+ RDISISQ + S+SGIPQY V+I+NTC+S CA
Sbjct: 11  NQNSTAAVIKPAQVYSNYRKLLLHGTCTNRDISISQSRDSSSGIPQYIVQIVNTCVSGCA 70

Query: 66  PLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS 125
           P D+HL CG F+SA +++PR+F+RL  DDCLVNGG+ LK  QIIRF YS +F +PLAFKS
Sbjct: 71  PSDIHLHCGWFASARIVNPRIFKRLFYDDCLVNGGKPLKTSQIIRFTYSNSFMYPLAFKS 130

Query: 126 AKFC 130
           AKFC
Sbjct: 131 AKFC 134

[Close]

BLAST of Carg05547 vs. TrEMBL
Match: tr|A0A0R0GAI6|A0A0R0GAI6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G184800 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-33
Identity = 73/129 (56.59%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 3   SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTC 62
           SS    N SI V  + E  H   +K      C+ +DISISQ Q ST GIPQ+ V+I+N C
Sbjct: 38  SSHEDKNRSITVSMKVEHAHSASRKFWLHGTCTSKDISISQSQTSTPGIPQFIVQIVNNC 97

Query: 63  LSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFP 122
           +S CAP D+H  CGMF+SA +++PRLF+R+  DDCLVNGG  L P QIIRF YS TF +P
Sbjct: 98  VSGCAPSDIHFHCGMFASARMVNPRLFKRISCDDCLVNGGNPLAPSQIIRFTYSNTFSYP 157

Query: 123 LAFKSAKFC 130
           LAFKSAKFC
Sbjct: 158 LAFKSAKFC 166

[Close]

BLAST of Carg05547 vs. TrEMBL
Match: tr|V4U054|V4U054_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10006815mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-33
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 22  HLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANL 81
           H +K L    C+ RDISISQ + STSGIPQY V+I+NTC+S CAP D+HL CG F+SA +
Sbjct: 24  HNRKLLVHGSCTNRDISISQSKDSTSGIPQYVVQIVNTCVSGCAPSDIHLHCGWFASARV 83

Query: 82  IDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKSAKFC 130
           ++PR F+R+  DDCLVNGG  L+P Q+IRF YS +F +P+AFKSAKFC
Sbjct: 84  VNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 131

The following BLAST results are available for this feature:

BLAST of Carg05547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959000.1	1.5e-66	97.67	TPD1 protein homolog 1-like [Cucurbita moschata]	[more]
CDO98766.1	8.7e-35	60.33	unnamed protein product [Coffea canephora]	[more]
XP_014623826.1	1.3e-33	57.36	TPD1 protein homolog 1 [Glycine max] >KRH11947.1 hypothetical protein GLYMA_15G1...	[more]
CBI22881.3	2.1e-33	55.65	unnamed protein product, partial [Vitis vinifera]	[more]
XP_010649517.1	2.1e-33	55.65	PREDICTED: TPD1 protein homolog 1 [Vitis vinifera]	[more]

BLAST of Carg05547 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32583.1	2.2e-24	50.00	FUNCTIONS IN: molecular_function unknown	[more]
AT4G24972.1	5.6e-20	44.14	tapetum determinant 1	[more]
AT1G05835.1	5.5e-07	34.04	PHD finger protein	[more]

BLAST of Carg05547 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1G3T1\|TDL1_ARATH	4.0e-23	50.00	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
sp\|Q8S6P9\|TDL1B_ORYSJ	1.6e-19	43.69	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
sp\|Q2QR54\|TDL1A_ORYSJ	2.7e-19	44.23	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
sp\|Q6TLJ2\|TPD1_ARATH	1.0e-18	44.14	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
sp\|A8MS78\|Y1583_ARATH	9.9e-06	34.04	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Carg05547 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A068TRC0\|A0A068TRC0_COFCA	5.8e-35	60.33	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025682001 PE=4 ...	[more]
tr\|I1MGE9\|I1MGE9_SOYBN	8.3e-34	57.36	Uncharacterized protein OS=Glycine max OX=3847 GN=100796799 PE=4 SV=1	[more]
tr\|D7SYL1\|D7SYL1_VITVI	1.4e-33	55.65	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g00980 PE=4 SV=...	[more]
tr\|A0A0R0GAI6\|A0A0R0GAI6_SOYBN	3.2e-33	56.59	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G184800 PE=4 SV=1	[more]
tr\|V4U054\|V4U054_9ROSI	3.2e-33	61.11	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10006...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05547-RA	Carg05547-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 28..129
None	No IPR available	PANTHER	PTHR33184:SF10	SUBFAMILY NOT NAMED	coord: 28..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05547	ClCG06G004590	Watermelon (Charleston Gray)	carwcgB0073
Carg05547	Cp4.1LG12g03150	Cucurbita pepo (Zucchini)	carcpeB0099
Carg05547	Bhi12G001723	Wax gourd	carwgoB0080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05547	Silver-seed gourd	carcarB079
Carg05547	Silver-seed gourd	carcarB081
Carg05547	Silver-seed gourd	carcarB085
Carg05547	Cucumber (Gy14) v2	carcgybB0070
Carg05547	Cucumber (Gy14) v2	carcgybB0072
Carg05547	Cucumber (Gy14) v1	carcgyB0076
Carg05547	Cucumber (Gy14) v1	carcgyB0083
Carg05547	Cucurbita maxima (Rimu)	carcmaB0089
Carg05547	Cucurbita maxima (Rimu)	carcmaB0091
Carg05547	Cucurbita maxima (Rimu)	carcmaB0095
Carg05547	Cucurbita maxima (Rimu)	carcmaB0096
Carg05547	Cucurbita moschata (Rifu)	carcmoB0096
Carg05547	Cucurbita moschata (Rifu)	carcmoB0095
Carg05547	Cucurbita moschata (Rifu)	carcmoB0097
Carg05547	Cucurbita moschata (Rifu)	carcmoB0101
Carg05547	Cucurbita moschata (Rifu)	carcmoB0103
Carg05547	Cucurbita moschata (Rifu)	carcmoB0104
Carg05547	Cucurbita pepo (Zucchini)	carcpeB0098
Carg05547	Cucurbita pepo (Zucchini)	carcpeB0102
Carg05547	Cucurbita pepo (Zucchini)	carcpeB0106
Carg05547	Cucurbita pepo (Zucchini)	carcpeB0108
Carg05547	Cucurbita pepo (Zucchini)	carcpeB0109
Carg05547	Wild cucumber (PI 183967)	carcpiB0075
Carg05547	Wild cucumber (PI 183967)	carcpiB0073
Carg05547	Cucumber (Chinese Long) v2	carcuB0070
Carg05547	Cucumber (Chinese Long) v2	carcuB0071
Carg05547	Cucumber (Chinese Long) v3	carcucB0077
Carg05547	Cucumber (Chinese Long) v3	carcucB0079
Carg05547	Bottle gourd (USVL1VR-Ls)	carlsiB061
Carg05547	Bottle gourd (USVL1VR-Ls)	carlsiB062
Carg05547	Bottle gourd (USVL1VR-Ls)	carlsiB064
Carg05547	Melon (DHL92) v3.5.1	carmeB0067
Carg05547	Melon (DHL92) v3.5.1	carmeB0074
Carg05547	Melon (DHL92) v3.6.1	carmedB0068
Carg05547	Melon (DHL92) v3.6.1	carmedB0075
Carg05547	Watermelon (Charleston Gray)	carwcgB0070
Carg05547	Watermelon (Charleston Gray)	carwcgB0071
Carg05547	Watermelon (Charleston Gray)	carwcgB0072
Carg05547	Watermelon (97103) v1	carwmB0068
Carg05547	Watermelon (97103) v1	carwmB0070
Carg05547	Watermelon (97103) v1	carwmB0071
Carg05547	Watermelon (97103) v1	carwmB0073
Carg05547	Watermelon (97103) v2	carwmbB0067
Carg05547	Watermelon (97103) v2	carwmbB0068
Carg05547	Watermelon (97103) v2	carwmbB0069
Carg05547	Watermelon (97103) v2	carwmbB0070
Carg05547	Wax gourd	carwgoB0079
Carg05547	Wax gourd	carwgoB0085
Carg05547	Wax gourd	carwgoB0086